Age | Commit message (Collapse) | Author | Files | Lines | |
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2016-06-16 | Tweak how R packages are built. | Glenn Johnson | 5 | -10/+14 | |
Add bzip2 as a dependency to base R. Switch from installing the R packages from tar files to installing from the extracted directory. This is more in line with a standard install and also allows installing from VCS. Use the Bioconductor version for BiocGenerics and future Bioconductor packages. Suffix the package with 'bioc-$version' to indicate which Bioconductor release the package is a part of. This is actually more important than the actual version attached to individual packages although those are subject to change within the Bioconductor branch. | |||||
2016-06-16 | Fix flake8 errors | Glenn Johnson | 2 | -3/+4 | |
Use Bioconductor provided Short URL for homepage in BiocGenerics. Wrap description text for utf variant in pcre. | |||||
2016-06-16 | Update version of BiocGenerics | Glenn Johnson | 1 | -1/+1 | |
The BioConductor repositories only keep the most recent version so this has to be bumped. | |||||
2016-06-16 | Use configure_args rather than options | Glenn Johnson | 1 | -8/+8 | |
Replaced 'options' with 'configure_args'. That seems like a better name and is consistent with the packaging guide. | |||||
2016-06-16 | Add variant for UTF support to pcre | Glenn Johnson | 1 | -1/+9 | |
This will build PCRE with UTF support by default. That seems to be reasonable for most environments. | |||||
2016-06-16 | Clean up R extensions | Glenn Johnson | 4 | -8/+16 | |
Run the existing R extension packages through autopep8 to clean up. | |||||
2016-06-16 | Add version 3.3.0 of R | Glenn Johnson | 1 | -0/+3 | |
This commit adds the 3.3.0 version of R and adds dependencies on curl and pcre. | |||||
2016-06-16 | Clean up R package files | Glenn Johnson | 1 | -25/+19 | |
- remove unused imports - apply pep8 - reformat text strings | |||||
2016-06-16 | Merge pull request #1068 from epfl-scitas/fixes/flake8_no_f405 | Todd Gamblin | 1 | -1/+1 | |
Flake8: ignore F405 | |||||
2016-06-16 | Merge pull request #944 from adamjstewart/features/bertini | Todd Gamblin | 1 | -0/+50 | |
Add bertini package | |||||
2016-06-16 | Merge pull request #962 from adamjstewart/features/hpl | Todd Gamblin | 1 | -0/+119 | |
Add HPL benchmark package | |||||
2016-06-16 | Replace 2.6-incompatible skipIf with a conditional. | Todd Gamblin | 1 | -4/+8 | |
- skipIf doesn't work with Python 2.6. | |||||
2016-06-16 | remove dead code, cleanup. | Todd Gamblin | 2 | -42/+26 | |
2016-06-16 | simplify instance check. | Todd Gamblin | 1 | -2/+1 | |
2016-06-16 | rename Mac OS X to macos | Todd Gamblin | 3 | -21/+19 | |
2016-06-16 | flake8: ignore F405 | alalazo | 1 | -1/+1 | |
2016-06-16 | Added str method to mac_osx so that whenever we try to access darwins ↵ | Mario Melara | 2 | -9/+8 | |
different operating systems we can grab the name correctly. This avoids having to worry whether we have a version attached to it or not. | |||||
2016-06-16 | Merge branch 'features/newarch' into develop | Todd Gamblin | 68 | -516/+2350 | |
Conflicts: lib/spack/spack/config.py var/spack/repos/builtin/packages/lua/package.py | |||||
2016-06-16 | Fixes #460: Do not show variants by default in spack find. | Todd Gamblin | 3 | -11/+30 | |
This does two things: 1. By default `spack find` no longer shows variants. You have to supply `-v` to get that 2. This improves the `colify` implementation so that it no longer pads the rightmost column. This avoids the issue where if one spec was too long in the output, *all* specs would have space padding added to that width, and it would look like the output of `spack find` was double spaced. This no longer happens -- the one bad line wraps around and the other lines are now single-spaced when you use `-v` with boost. | |||||
2016-06-16 | Just call old os "unknown" | Todd Gamblin | 1 | -1/+1 | |
2016-06-16 | fix up packages for new architecture. | Todd Gamblin | 4 | -9/+9 | |
2016-06-16 | Add libxcb dependencies. Fix up packages to get py-basemap and stat to build. | Todd Gamblin | 8 | -6/+170 | |
2016-06-16 | be more tolerant when parsing new specs. | Todd Gamblin | 1 | -6/+13 | |
2016-06-16 | Add `__contains__` to arch to satsify old packages. | Todd Gamblin | 1 | -2/+9 | |
2016-06-15 | two minor fixes | Gregory Becker | 2 | -9/+9 | |
2016-06-15 | Two minor fixes | Gregory Becker | 2 | -8/+8 | |
2016-06-15 | Merge pull request #1045 from eschnett/eschnett/openmpi-verbs-usr | Todd Gamblin | 1 | -1/+1 | |
Do not pass "/usr" or "/usr/local" as path to configure | |||||
2016-06-15 | Merge pull request #1058 from eschnett/eschnett/blosc | Todd Gamblin | 2 | -0/+257 | |
Add packages c-blosc and hdf5-blosc | |||||
2016-06-15 | Merge pull request #1028 from JRWynneIII/boost-graph-parallel-fix | Todd Gamblin | 1 | -34/+43 | |
Add variant for boost graph and parallel graph | |||||
2016-06-15 | Merge pull request #1040 from KineticTheory/pkg-trilinos | Todd Gamblin | 1 | -84/+123 | |
Make Boost an optional feature of Trilinos. | |||||
2016-06-15 | Merge pull request #1037 from KineticTheory/develop | Todd Gamblin | 1 | -3/+8 | |
Package serf also depends on zlib. | |||||
2016-06-15 | Merge pull request #1031 from opoplawski/pcre | Todd Gamblin | 2 | -0/+15 | |
Add patch to compile pcre with Intel 16.0.3 compiler | |||||
2016-06-15 | Merge pull request #1051 from daboehme/develop | Todd Gamblin | 1 | -1/+1 | |
Use https for github in Caliper package | |||||
2016-06-14 | Install shared libraries correctly on Linux | Erik Schnetter | 1 | -10/+18 | |
2016-06-14 | Correct Blosc install on Darwin | Erik Schnetter | 2 | -28/+153 | |
2016-06-14 | Add packages c-blosc and hdf5-blosc | Erik Schnetter | 2 | -0/+124 | |
c-blosc provides the Blosc compression filter, and hdf5-blosc provides a plugin for HDF5 to use that filter. | |||||
2016-06-13 | Use https for github | David Boehme | 1 | -1/+1 | |
2016-06-12 | Update formatting to meet code style requirements. | Kelly (KT) Thompson | 1 | -80/+113 | |
2016-06-12 | Make Boost an optional feature of Trilinos. | Kelly (KT) Thompson | 1 | -4/+10 | |
I have been unable to build Boost with some toolset/platform combinations. The users I support don't need the Boost features in Trilinos, so I have been manually hacking trilinos/package.py to disable boost. I would like to propose that these changes be added to the released version. + Add boost as a variant, default to true so there is no change to existing behavior. + Move the CMake configure options related to Boost into a conditional block that is triggered by "if '+boost' in spec". | |||||
2016-06-12 | Merge pull request #1026 from epfl-scitas/packages/lmod | Tom Scogland | 5 | -155/+143 | |
lmod : updated package and dependencies | |||||
2016-06-11 | Do not pass "/usr" or "/usr/local" as path to configure | Erik Schnetter | 1 | -1/+1 | |
2016-06-11 | qa : fixed style and a bug reported by flake8 | alalazo | 1 | -45/+3 | |
lib/spack/spack/test/versions.py:313: [F811] redefinition of unused 'test_union_with_containment' from line 306 Flake8 found errors. | |||||
2016-06-11 | versions : added unit tests for the new properties | alalazo | 1 | -0/+8 | |
2016-06-10 | I made a hash of that minor merge | Gregory Becker | 5 | -131/+87 | |
Merge commit '4eeb' into features/newarch | |||||
2016-06-10 | changed compiler yaml format | Gregory Becker | 5 | -131/+87 | |
2016-06-10 | Merge pull request #1020 from LLNL/bugfix/libdwarf_versions | Todd Gamblin | 1 | -4/+9 | |
put older versions back + version-specific dwarfdump dir | |||||
2016-06-09 | Fix style issues. | Kelly (KT) Thompson | 1 | -3/+5 | |
2016-06-09 | Package serf also depends on zlib. | Kelly (KT) Thompson | 1 | -2/+5 | |
+ Add zlib as a required dependency. + Point scons build system to the spack provided zlib installation. | |||||
2016-06-08 | Add additional blank line for flake8 | Orion Poplawski | 1 | -0/+1 | |
2016-06-08 | Add patch to compile pcre with Intel 16.0.3 compiler | Orion Poplawski | 2 | -0/+14 | |