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2021-12-15Revert "patches: make re-applied patches idempotent (#26784)" (#27625)Harmen Stoppels4-137/+25
This reverts commit c5ca0db27fce5d772dc8a4fcffec3b62bb0bf1f3.
2021-12-15libtree: add v3.0.0 (#28011)Harmen Stoppels1-1/+1
2021-12-15open3d: add new package (#27577)Adam J. Stewart5-0/+190
2021-12-15mesa: check correct LLVM variant for dylib (#27862)kwryankrattiger2-2/+2
2021-12-15mesa: add v21.2.6, v21.3.1 (#27796)Wouter Deconinck1-0/+3
2021-12-15Add option to minimize full debug cores. include warning message about ↵Greg Becker5-22/+74
performance (#27970) Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2021-12-14New package: py-neurolab (#27996)iarspider1-0/+18
* New package: py-neurolab * Update package.py * Update package.py
2021-12-14New package: py-lizard (#27994)iarspider1-0/+20
* New package: py-lizard * Update package.py
2021-12-14New package: py-nbdime (#27995)iarspider1-0/+30
2021-12-14ci: Catch Exceptions when attempting to register a CDash build (#27883)Zack Galbreath2-18/+22
This PR also slightly changes the behavior in ci_rebuild(). We now still attempt to submit `spack install` results to CDash even if the initial registration failed due to connection issues. This commit follows in the spirit of #24299. We do not want `spack install` to exit with a non-zero status when something goes wrong while attempting to report results to CDash.
2021-12-14New package: py-law (#27993)iarspider1-0/+22
2021-12-14OpenLDAP package: update dependencies for 2.6.0 (#27830)iarspider3-21/+77
Update a number of dependency constraints for @2.6.0: (including adding new optional dependency package wiredtiger).
2021-12-14Abinit package: add option to install tests (#27842)downloadico1-0/+8
2021-12-14Add libtree 3.0.0-rc9 (#27990)Harmen Stoppels1-17/+32
2021-12-13New packages: py-keras2onnx, py-onnxconverter-common (#27962)iarspider2-0/+44
* New packages: py-keras2onnx, py-onnxconverter-common * Update package.py (#18) * Update package.py * Update package.py
2021-12-13Add a CI job to audit all the packages in the built-in repository (#27945)Massimiliano Culpo21-70/+44
* Add a CI job to audit all the packages in the built-in repository * flecsi: fixed typo for dependency on legion * py-pythonqwt: fix a typo in variant name * sollve: removed a conflict with a non-existing variant * acts: fixed use of wrong variant in dd4hep Also removed duplicated variant declaration in dd4hep * aoflagger: update variant of a dependency Issues introduced indirectly in #22925 * camellia: removed unused variant Issue introduced indirectly in #26150 * cbtf-*: remove cti variants and dependency on mrnet+cti Issue introduced in #14178 * flecsale: update variants to match flecsi Issue introduced in #11679 * grnboost: fixed issue with non-existing variant in a dependency This package possibly never worked since #8763 * nalu: fixed issue with non-existing variant in a dependency * open-iscsi: fixed issue with non-existing variant in a dependency * openspeedshop-*: remove use of non-existing mrnet+cti variant * percept: fixed issue with non-existing variant in a dependency * phyluce: fixed issue with non-existing variant in a dependency Issue introduced in #12952 * phyluce: fixed issue with non-existing variant in a dependency Issue introduced in #22340
2021-12-13CPU Architecture support (#27924)Scot Halverson1-7/+3
* CPU Architecture Support This commit removes the `native` variant in favor of Spack's built-in support for specifying a target cpu architecture. It also passes this information to the Legion build system so that it correctly passes the architecture to GASNet when built internally * fixing whitespace * Update package.py based on a conversation with @streichler, this change sets `BUILD_MARCH` to an empty string, which will prevent legion's CMake build system from inserting `-march=native` and allow Spack to provide the correct architecture flags. * Update package.py adding a comment on what problem this MR solves. * Update package.py formatting
2021-12-13New package: py-histbook (#27956)iarspider1-0/+18
2021-12-13New package: py-histogrammar (#27957)iarspider1-0/+21
2021-12-13New package: py-jupyter-server-mathjax (#27958)iarspider1-0/+21
2021-12-13r-packrat: add 0.7.0 (#27901)Manuela Kuhn1-2/+2
2021-12-13r-rsconnect: add 0.8.17 (#27900)Manuela Kuhn1-0/+2
2021-12-13r-vroom: add 1.5.7 (#27874)Manuela Kuhn1-0/+1
2021-12-13r-r6: add 2.5.1 (#27871)Manuela Kuhn1-2/+2
2021-12-13vtk-m +cuda: conflicts with cuda_arch=none (#27916)eugeneswalker1-0/+3
2021-12-13Install dir creation message demoted to "debug" level (#27911)Harmen Stoppels1-2/+1
2021-12-11New package: py-hep-ml (#27909)iarspider1-0/+23
2021-12-11New package: py-grpcio-tools; add new version of py-grpcio (#27907)iarspider2-0/+61
2021-12-11PICMI: 0.16 & 0.18 & WarpX 1D (#27876)Axel Huebl4-14/+31
* PICMI: 0.16 & 0.18 & WarpX 1D Update the `py-picmistandard` and the latest WarpX release. Preparing 1D support (testable inputs coming for 22.01+). * Fix style: overlong line * Update pypi example link * Fix requirement ranges * WarpX 21.12: Update Patch Follow-up from https://github.com/ECP-WarpX/WarpX/pull/2646 * fix style Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-12-11openjpeg: add missing dependencies and optionally disable them (#27904)Sergey Kosukhin1-1/+21
* openjpeg: add missing dependencies and optionally disable them * openjpeg: remove variant 'ownlibs' * openjpeg: bugfix Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * openjpeg: do not build CODEC executables by default Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-12-10r-emmeans: add 1.7.1-1 (#27870)Manuela Kuhn1-0/+1
2021-12-10r-dt: add 0.20 (#27868)Manuela Kuhn1-2/+3
2021-12-10lua package: fix build with ncurses~termlib (#27863)Peter Brady1-4/+4
Get link flags directly from dependencies rather than hardcoding
2021-12-10superlu-dist: superlu-cray-ftn-case.patch patch does not apply for versions ↵Satish Balay1-1/+1
older than 7.1.0 (#27913)
2021-12-10petsc, py-petsc4py: add versions 3.16.2 (#27841)Satish Balay2-0/+2
2021-12-10r-cpp11 package: add version 0.4.2 (#27869)Manuela Kuhn1-0/+1
2021-12-10r-htmltools package: add version 0.5.2 (#27899)Manuela Kuhn1-0/+3
2021-12-10vtk-h +cuda: pass cuda_arch to vtk-m dependency (#27923)eugeneswalker1-2/+3
2021-12-10Adding NVIDIA HPC SDK 21.11 (#27910)Filippo Spiga1-0/+4
2021-12-10[parallelio] add variant to turn off timing messages. (#27590)Timothy Brown1-0/+5
* [parallelio] add variant to turn off timing messages.
2021-12-10New package: py-hist and it's dependencies (#27914)iarspider6-0/+118
* New package: py-hist and it's dependencies * Update var/spack/repos/builtin/packages/py-hist/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-histoprint/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-mplhep/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update py-hist recipe * Update package.py * Fix py-iminuit recipe (requires py-cmake now) * Update package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-12-10Update quantum-espresso package (#27808)Ye Luo1-117/+112
* Override compiler as MPI wrapper in CMake. * Refine quantum-espresso variant interations. * Correct formatting.
2021-12-10New package: py-correctionlib (#27882)iarspider2-0/+55
* New package: py-correctionlib * Update var/spack/repos/builtin/packages/py-correctionlib/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-correctionlib/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Add py-make and update py-correctionlib recipe * Add py-bind11 dependency * Update package.py * Update package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-12-10New package: py-flawfinder (#27887)iarspider1-0/+18
* New package: py-flawfinder * Build py-flawfinder from source * Update package.py
2021-12-10New package: py-hepdata-lib (#27912)iarspider1-0/+24
2021-12-10Extends: support spec, not just package name (#27754)Adam J. Stewart3-1/+28
2021-12-10Improve debug info from concretizer (#27707)Greg Becker2-2/+33
2021-12-10Refactor "spack buildcache" command (#27776)Massimiliano Culpo12-439/+512
This PR is meant to move code with "business logic" from `spack.cmd.buildcache` to appropriate core modules[^1]. Modifications: - [x] Add `spack.binary_distribution.push` to create a binary package from a spec and push it to a mirror - [x] Add `spack.binary_distribution.install_root_node` to install only the root node of a concrete spec from a buildcache (may check the sha256 sum if it is passed in as input) - [x] Add `spack.binary_distribution.install_single_spec` to install a single concrete spec from a buildcache - [x] Add `spack.binary_distribution.download_single_spec` to download a single concrete spec from a buildcache to a local destination - [x] Add `Spec.from_specfile` that construct a spec given the path of a JSON or YAML spec file - [x] Removed logic from `spack.cmd.buildcache` - [x] Removed calls to `spack.cmd.buildcache` in `spack.bootstrap` - [x] Deprecate `spack buildcache copy` with a message that says it will be removed in v0.19.0 [^1]: The rationale is that commands should be lightweight wrappers of the core API, since that helps with both testing and scripting (easier mocking and no need to invoke `SpackCommand`s in a script).
2021-12-09umpire: needs cmake@:3.20 when +rocm (#27893)eugeneswalker1-0/+1
2021-12-09raja +rocm: depends on cmake@:3.20 for now (#27895)eugeneswalker1-0/+2
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