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2023-02-03py-packaging: add constrain on python version (#35325)Massimiliano Culpo1-0/+3
2023-02-03py-igor: new package (#35229)Erik Heeren1-0/+19
* py-igor: new package * py-igor: review remarks
2023-02-03Add py netpyne, meautility, and lfpykit (#35262)Erik Heeren3-0/+73
* py-netpyne: new package with dependencies * py-netpyne, py-meautility, py-lfpykit: license update * py-netpyne: review remarks * py-netpyne: style * py-netpyne: don't limit python version
2023-02-03py-glmsingle: add 1.1 (#35311)Manuela Kuhn1-12/+15
2023-02-02CMake: Add version 3.25.2 (#35196)Rémi Lacroix1-0/+1
2023-02-02py-torchmetrics: add v0.11.1 (#35260)Adam J. Stewart1-0/+1
2023-02-02NMake builder: fix incorrect variable reference (#34937)John W. Parent1-1/+1
2023-02-02py-black: add v23.1.0 (#35279)Adam J. Stewart2-6/+9
* py-black: add v23.1.0 * py-packaging: add v23.1.0
2023-02-02Update to latest version. (#35309)Larry Knox1-3/+3
Update hdf5-vol-external-passthrough to latest version compatible with HDF5 1.14
2023-02-02py-minkowskiengine: new package (sparse tensor autodiff by Nvidia) (#35302)Wouter Deconinck1-0/+32
* py-minkowskiengine: new package (sparse tensor autodiff by Nvidia) This python package (with cuda support) provides torch support for sparse tensors. The `pybind11` headers are not found without the patch to `setup.py`. * [@spackbot] updating style on behalf of wdconinc * py-minkowskiengine: depends_on numpy, pybind11 type=link; no patch * [@spackbot] updating style on behalf of wdconinc --------- Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
2023-02-02zlib package: fix build on Windows (#35103)John W. Parent1-3/+3
2023-02-02py-getorganelle: rename to getorganelle and add version 1.7.7.0 (#35270)snehring2-1/+40
* py-getorganelle: rename to getorganelle and add version 1.7.7.0 * py-getorganelle: deprecating package
2023-02-02py-nilearn: add 0.10.0 (#35303)Manuela Kuhn1-0/+10
2023-02-02LAMMPS: Package KIM requires CURL after version 20190329 (#35182)Rémi Lacroix1-0/+1
2023-02-01Use the `maintainers` directive in all packages (#35201)Massimiliano Culpo1493-1525/+1526
2023-02-01amrex: add v23.02 (#35286)Weiqun Zhang1-1/+2
2023-02-01glib: 2.74: needs pcre2@10.34: (#35283)Jordan Galby1-0/+1
2023-02-01[WRF] Adding new versions (#35244)Timothy Brown2-1/+119
* [WRF] Adding new versions. * Style fixes.
2023-02-01fastqc: Use the spack built perl (#35276)Glenn Johnson1-8/+3
The fastqc script was using the system perl. This PR sets the script to use the spack built/provided perl. This PR also removes the code that adds the java path. That should be handled by module loading as far as I know.
2023-02-01Add hdf5 versions 1.14.0, develop-1.14 and update develop version from ↵Larry Knox4-14/+58
develop-1.13 to develop-1.15 (#34734) * Add HDF5 version 1.13.3. * Remove maintainers no longer with The HDFGroup. * Add version hdf5-vol-async@1.4 * Add HDF5 version 1.14.0, develop-1.14, develop-1.15. Add missing conflicts for api version and develop versions. * Add conflicts statement to hdf5/package.py to avoid building hdf5 with MPICH 4.0.x versions with bug that causes testphdf5 test to fail. * Add patch to call find_package(MPI) for dependent packages not finding it, not having called it themselves. * Remove language components from find_package(MPI) in hdf5_1_14_0_config_find_mpi.patch. * Add HDF5 version 1.14.0, develop-1.14, develop-1.15. Add missing conflicts for api version and develop versions. * Add conflicts statement to hdf5/package.py to avoid building hdf5 with MPICH 4.0.x versions with bug that causes testphdf5 test to fail. * Add patch to call find_package(MPI) for dependent packages not finding it, not having called it themselves. * Remove language components from find_package(MPI) in hdf5_1_14_0_config_find_mpi.patch. * Don't guard ParaView patch on HDF5 variant ParaView always needsd HDF5 and ignores the variant. * py-h5py: Newer versions of HDF5 introduce breaking API changes --------- Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com> Co-authored-by: Ryan Krattiger <ryan.krattiger@kitware.com>
2023-02-01Pin black to 22.12.0 to avoid spurious style changes (#35282)Massimiliano Culpo2-2/+2
We need to sync changes on major versions with spackbot, to avoid the bot saying everything is allright and have CI failing nonetheless.
2023-02-01py-equation: new package (#35198)Erik Heeren1-0/+23
* py-equation: new package * py-equation: add variants for extra dependencies
2023-01-31`nccl`: v2.15.5-1, v2.16.2-1 (#35248)Thomas Bouvier1-0/+2
* `nccl`: v2.15.5-1, v2.16.2-1 * Fix wrong sha256 * Revert checksums (after GitHub has algorithm change reverted)
2023-01-31libffi: New version 3.4.4 (#35087)Erik Schnetter1-0/+1
2023-01-31Revert "flex%oneapi@2023.0.0: -Wno-error=implicit-function-declaration ↵eugeneswalker1-4/+0
(#34900)" (#35181) This reverts commit 62f83dfb6dbc86eace56495aa59587ac1942dc20.
2023-01-31Adding rocm-opencl prefix lib path to LD_LIBRARY_PATH for run_environment ↵renjithravindrankannath1-0/+1
(#35011)
2023-01-31Fix awscli and deps (#35158)Harmen Stoppels4-7/+27
* py-docutils/py-pyyaml specify python 3.11 compat * bump awscli / py-botocore * fix botocore again * review fixes * .
2023-01-31Add trilinos-solvers variant to nalu-wind package. (#35267)Alan Williams1-2/+9
* Add trilinos-solvers variant to nalu-wind package. This allows nalu-wind to be built against a trilinos installation which doesn't have amesos2, belos, ifpack2, or muelu enabled, if the nalu-wind user provides the spec 'nalu-wind@master~trilinos-solvers' Support for these solver-packages remains on by default. * Fixed a style issue reported by CI. * Incorporate change in wording suggested from review comments. ... to clarify that at least one, or both, of hypre and/or trilinos-solvers must be enabled. The error condition is if both are disabled. * That style checker is picky... * It really did want a trailing comma...
2023-01-31py-munkres: new package (#35259)Erik Heeren1-0/+19
2023-01-31strumpack +rocm: set CMAKE_CXX_COMPILER to hipcc (#35153)eugeneswalker2-0/+30
* strumpack +rocm: set CMAKE_CXX_COMPILER to hipcc * strumpack@7.0.1+rocm^mpich: patch in upstream commit
2023-01-31py-matplotlibscalebar: new package (#35242)Erik Heeren1-0/+24
* py-matplotlibscalebar: new package * py-matplotlibscalebar: style * py-matplotlib-scalebar: review remarks
2023-01-31py-jinja2-cli: new package (#35238)Erik Heeren1-0/+20
* py-jinja2-cli: new package * Update var/spack/repos/builtin/packages/py-jinja2-cli/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-01-30[py-protoc-gen-swagger] new package (#35241)Jen Herting1-0/+18
* [py-protoc-gen-swagger] new package * [@spackbot] updating style on behalf of qwertos --------- Co-authored-by: qwertos <qwertos@users.noreply.github.com>
2023-01-30Update `py-docker` package (#35217)Jean-Baptiste Skutnik1-2/+13
* Add py-docker@5: * [@spackbot] updating style on behalf of spoutn1k * Ignore `tls` variant * Update var/spack/repos/builtin/packages/py-docker/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * `py-docker`: `py-paramiko` version fix --------- Co-authored-by: spoutn1k <spoutn1k@users.noreply.github.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-01-30arm-forge: add 22.1.3 (#35200)kent-cheung-arm1-0/+9
2023-01-30py-fiona: add v1.9.0 (#35247)Adam J. Stewart2-12/+21
2023-01-30HDF5 static (#34577)Alex Richert1-2/+0
* Add HDF5 static support for netcdf-c * Update var/spack/repos/builtin/packages/hdf5/package.py Apply pkgconfig fix for all libraries, not just lz Co-authored-by: Sergey Kosukhin <skosukhin@gmail.com> * Update package.py Fix pkg config templates * remove subprocess+2 lines * Try netcdf-c changes only Co-authored-by: Sergey Kosukhin <skosukhin@gmail.com>
2023-01-30py-torchgeo: add v0.4.0 (#35155)Adam J. Stewart2-18/+37
* py-torchgeo: add v0.4.0 * Add missing java dep
2023-01-30py-protobuf: various updates (#35188)Adam J. Stewart2-18/+4
2023-01-30py-shapely: add v2.0.1 (#35246)Adam J. Stewart1-7/+8
2023-01-30py-mariadb: new package (#35240)Erik Heeren1-0/+26
* py-mariadb: new package * py-mariadb: style
2023-01-30py-hjson: fix typo in latest version (#35234)Erik Heeren1-1/+1
2023-01-30Bugfix: Update Petsc Python dependency (#35216)Tamara Dahlgren1-1/+3
* Bugfix: Update Petsc python dependency for at least 3.18: * Update var/spack/repos/builtin/packages/petsc/package.py Co-authored-by: Satish Balay <balay@mcs.anl.gov>
2023-01-30e4s: add and prefer boost +python +filesystem +iostreams +system (#35180)eugeneswalker1-0/+3
2023-01-30rocblas: remove unnecessary conflicts (#35232)Cory Bloor1-2/+0
The gfx906:xnack- and gfx908:xnack- targets were introduced in ROCm 4.1 and replaced gfx906 and gfx908 as default build targets, but the library can still be built for gfx906 and gfx908 if requested.
2023-01-30mpich: add 4.0.3 and 4.1 releases (#35218)Ken Raffenetti1-0/+2
2023-01-30montage: fixing compilation issues for newer gcc versions (#35220)snehring1-0/+7
2023-01-30apptainer: update constraint on go dependency (#35230)simonleary-umass-edu1-0/+2
2023-01-30hypre: Update URL using citation instructions from ↵Satish Balay1-3/+1
https://github.com/hypre-space/hypre/wiki/Citing-hypre (#35225)
2023-01-30adios2: allow building on Windows (#35102)John W. Parent1-6/+17
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