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2021-03-05libabigail: new package (#22092)Vanessasaurus1-0/+25
* adding package for libabigail, which we likely will need to use it for an analysis! * includes variant for documentation (doxygen and pysphinx are associated dependencies)
2021-03-05Improve R package creation (#21861)Glenn Johnson3-6/+125
* Improve R package creation This PR adds the `list_url` attribute to CRAN R packages when using `spack create`. It also adds the `git` attribute to R Bioconductor packages upon creation. * Switch over to using cran/bioc attributes The cran/bioc entries are set to have the '=' line up with homepage entry, but homepage does not need to exist in the package file. If it does not, that could affect the alignment. * Do not have to split bioc * Edit R package documentation Explain Bioconductor packages and add `cran` and `bioc` attributes. * Update lib/spack/docs/build_systems/rpackage.rst Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update lib/spack/docs/build_systems/rpackage.rst Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Simplify the cran attribute The version can be faked so that the cran attribute is simply equal to the CRAN package name. * Edit the docs to reflect new `cran` attribute format * Use the first element of self.versions() for url Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-03-05gtkplus: add new version, convert to meson (#21914)Adam J. Stewart1-27/+69
* gtkplus: add new version, convert to meson * Add suggestions from aweits
2021-03-05Added support for disabling mumps in ipopt (#21592)Asher Mancinelli1-9/+16
2021-03-05casacore: use a modern CMake's version of FindHDF5.cmake (#21882)Martin Pokorny1-0/+7
Remove casacore's old version of the file with a package patch() function, and depend on a modern CMake for the build. Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-03-05syscalc: fix recipe and URL (extension) (#22112)iarspider1-3/+9
2021-03-05Add Caliper 2.5.0 and Adiak 0.3.0 (#20718)David Böhme2-20/+44
2021-03-05FEniCS: update of packages to support 2019.1.0 (#21207)emai-imcs3-119/+173
2021-03-05reframe: add v3.4.2 and v3.4.1, enable autocompletion (#22114)Vasileios Karakasis1-16/+22
2021-03-05py-oppy: add v0_1_5 (#22061)Mathew Cleveland1-1/+1
Co-authored-by: Cleveland <cleveland@lanl.gov>
2021-03-05tfel: add v3.3.1, fix typo in checksum of v3.4.0 (#22062)thelfer1-1/+2
2021-03-05pythia6: extra patch provided by CERN's EP-SFT (#22055)iarspider3-0/+22
2021-03-05mcl: fixing missing extern in global variables (#22094)snehring1-0/+5
Revealed by GCC 10 see https://gcc.gnu.org/gcc-10/porting_to.html
2021-03-05rtags: add v2.20 (#22068)darmac1-0/+1
2021-03-05dd4hep: add v0.16 and geant4units variant (#22064)Valentin Volkl1-0/+3
2021-03-05hpcviewer: add version 2021.03 (#22107)Mark W. Krentel1-0/+3
2021-03-05xfsprogs: add --with-systemd-unit-dir option (#22075)Tomoyasu Nojiri1-1/+3
2021-03-05freeipmi: add --with-systemdsystemunitdir option (#22096)Tomoyasu Nojiri1-1/+3
2021-03-05keepalived: add --with-systemdsystemunitdir option (#22098)Tomoyasu Nojiri1-0/+5
2021-03-05moosefs: add --with-systemdsystemunitdir option (#22099)Tomoyasu Nojiri1-0/+5
2021-03-05rrdtool: add --with-systemdsystemunitdir option (#22100)Tomoyasu Nojiri1-1/+3
2021-03-05py-torch: add v1.8.0 (#22101)Adam J. Stewart1-3/+5
2021-03-05py-torchvision: add v0.9.0 (#22102)Adam J. Stewart1-4/+6
2021-03-05SLATE: Default ~cuda (#22110)Axel Huebl1-1/+1
Same as BLAS++ since more GPU backends are coming and cuda is usually off as a variant default in Spack, unless requested.
2021-03-05py-python-ldap: add link dependency on cyrus-sasl (#22105)Tomoyasu Nojiri1-0/+1
2021-03-05hpctoolkit: add version 2021.03.01 (#22106)Mark W. Krentel1-12/+17
1. Add version 2021.03.01. 2. Cleanup the binutils dependencies now that 2.35.2 and 2.36 are available. 3. Require gcc 7.x or later for current 2021 version. 4. Simplify the xz depends to always require +pic. This works around a glitch in the original concretizer.
2021-03-05flexi: allow building on aarch64 (#22109)h-denpo2-0/+11
2021-03-05py-awkward1: add v1.1.2 (#22081)Valentin Volkl1-0/+1
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-03-04Allow relative paths in config files (relative to file dirname) (#21996)Greg Becker2-8/+63
This allows users to use relative paths for mirrors and repos and other things that may be part of a Spack environment. There are two ways to do it. 1. Relative to the file ```yaml spack: repos: - local_dir/my_repository ``` Which will refer to a repository like this in the directory where `spack.yaml` lives: ``` env/ spack.yaml <-- the config file above local_dir/ my_repository/ <-- this repository repo.yaml packages/ ``` 2. Relative to the environment ```yaml spack: repos: - $env/local_dir/my_repository ``` Both of these would refer to the same directory, but they differ for included files. For example, if you had this layout: ``` env/ spack.yaml repository/ includes/ repos.yaml repository/ ``` And this `spack.yaml`: ```yaml spack: include: includes/repos.yaml ``` Then, these two `repos.yaml` files are functionally different: ```yaml repos: - $env/repository # refers to env/repository/ above repos: - repository # refers to env/includes/repository/ above ``` The $env variable will not be evaluated if there is no active environment. This generally means that it should not be used outside of an environment's spack.yaml file. However, if other aspects of your workflow guarantee that there is always an active environment, it may be used in other config scopes.
2021-03-04hdf5: add v1.8.22. (#22089)Larry Knox1-0/+1
2021-03-04Add new package: perl-test-more (#22076)darmac1-0/+19
* Add new package: perl-test-more * perl-test-more: refine description
2021-03-04perl-test-output: new package at v1.033 (#22077)darmac1-0/+20
2021-03-04py-ase: add a build dependency on py-setuptools (#22078)Michael Kuron1-0/+1
2021-03-04py-sqlparse: add v0.4.1 (#22080)darmac1-0/+1
2021-03-04poke: new package at v1.0 (#22085)Dr. Christian Tacke1-0/+21
2021-03-04xrootd: add v5.1.0 (#22084)Dr. Christian Tacke1-0/+1
2021-03-04unifyfs: Fix strncpy build error of version 0.9.1 (#22066)Tomoyasu Nojiri2-0/+13
2021-03-04BLAS++: CUDA default (false) (#22067)Axel Huebl2-1/+2
For opt-in packages in Spack, its common that the `cuda` variant is disabled by default. This also simplifies downstream usage in multi-variants for backends in user code.
2021-03-04libblastrampoline: Add version 3.0.2 (#22065)Mosè Giordano1-0/+1
2021-03-03py-adb-enhanced: update version to fix runtime error (#22036)darmac1-2/+4
* py-adb-enhanced: update version to fix runtime error * py-adb-enhanced: fix dependencies
2021-03-03py-pycuda: new version 2020.1 (#22057)Andrew W Elble1-4/+19
* py-pycuda: new version 2020.1 * dep updates * deal with lib/lib64 issue
2021-03-03Bootstrap clingo from sources (#21446)Massimiliano Culpo12-44/+359
* Allow the bootstrapping of clingo from sources Allow python builds with system python as external for MacOS * Ensure consistent configuration when bootstrapping clingo This commit uses context managers to ensure we can bootstrap clingo using a consistent configuration regardless of the use case being managed. * Github actions: test clingo with bootstrapping from sources * Add command to inspect and clean the bootstrap store Prevent users to set the install tree root to the bootstrap store * clingo: documented how to bootstrap from sources Co-authored-by: Gregory Becker <becker33@llnl.gov>
2021-03-03precice: add pkgconfig as a build dependency (#22059)Frédéric Simonis1-0/+1
2021-03-03libxc: add v5.1.2 (#22056)Anton Kozhevnikov1-0/+1
2021-03-03py-pyprecice: Add version 2.1.1.2 and 2.2.0.1 (#22012)ajaust1-9/+15
2021-03-03py-pandas: add v1.2.3 (#22048)Adam J. Stewart1-0/+1
2021-03-03zig: add new package at v0.7.1 (#22046)Massimiliano Culpo2-0/+23
2021-03-02New Package: keepassxc (#21878)Olivier Cessenat1-0/+78
2021-03-02openfoam: disable FPE handling for Fujitsu compiler (#21769)Mark Olesen1-4/+12
- as outlined in merge-request #21336 some clang compilers can trigger erroneous floating point exceptions. OpenFOAM normally traps FPE, but disable this in the etc/controlDict for specific compilers: change "trapFpe digit;" -> "trapFpe 0;" Eliminate previous use of FOAM_SGIFPE env variable in favour of using the etc/controlDict setting - cleaner and robuster. Co-authored-by: Mark Olesen <Mark.Olesen@esi-group.com>
2021-03-02aws-parallelcluster v2.10.2 (#22047)rexcsn1-4/+4
Signed-off-by: Rex <shuningc@amazon.com>