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2022-08-17ncbi-toolkit: adding new version (#32098)snehring1-9/+8
2022-08-17Add omnitrace version 1.4.0 (#32160)Jonathan R. Madsen1-5/+9
* Add version 1.4.0 - override build variant with explicit variant instead of __init__ workaround * Update package.py
2022-08-17fasta-36.3.8h_2020-05-04 (#32180)Mike Renfro1-0/+5
* Adding 36.3.8h_2020-05-04 * [@spackbot] updating style on behalf of mikerenfro Co-authored-by: mikerenfro <mikerenfro@users.noreply.github.com>
2022-08-17rclone: add v1.59.1 (#32011)Erik Schnetter1-0/+1
2022-08-17acts: new versions 19.7.0, 20.0.0 (#32177)Wouter Deconinck1-2/+4
2022-08-17amr-wind: remove propagation of shared and openmp variant to dependencies. ↵Jon Rood1-5/+1
(#32182)
2022-08-17kokkos: set CMAKE_CXX_STANDARD instead of Kokkos_CXX_STANDARD (#31841)eugeneswalker1-1/+1
* kokkos@develop: set CMAKE_CXX_STANDARD instead of Kokkos_CXX_STANDARD * use CMAKE_CXX_STANDARD regardless of kokkos version
2022-08-17Add c++14 support flag for xl compiler (#31826)Peter Scheibel1-0/+8
2022-08-17lerc: add libs property (#31684)Adam J. Stewart1-0/+4
2022-08-17mxnet: prefer stable release (#31821)Adam J. Stewart1-1/+5
2022-08-17amrex: add v22.08 (#31844)Weiqun Zhang1-1/+2
2022-08-17e4s oneapi stack: remove notes for now-fixed builds (#31839)eugeneswalker1-3/+1
2022-08-17arm-forge: add v22.0.4. (#31835)RichardABunt1-0/+9
2022-08-17CI: reduce the amount of tests run in the original concretizer (#32179)Massimiliano Culpo2-3/+4
* CI: reduce the amount of tests run in the original concretizer * Don't test Python 3.6 on the original concretizer
2022-08-16kokkos: fix conflict for deprecated `sycl` namespaceTodd Gamblin1-1/+2
We're seeing errors pop up with older versions of Kokkos and newer versions of `oneapi`, specifically: error: no member named 'ONEAPI' in namespace 'sycl' This hapens because `sycl::ONEAPI` is `sycl::ext::oneapi` since oneapi `2022.0.0`. `kokkos@3.6:` uses the new namespace. A conflict was present for this, but it was too specific -- both to `dpcpp` and to the `2022.0.0` version. - [x] Expand version ranges in `kokkos` conflict - [x] Add conflict for `oneapi` in addition to `dpcpp`
2022-08-16filesystem: in recursive mtime, check only files that exist (#32175)Wouter Deconinck1-1/+1
* filesystem: use lstat in recursive mtime When a `develop` path contains a dead symlink, the `os.stat` in the recursive `mtime` determination trips up over it. Closes #32165.
2022-08-16bugfix: silence `clingo` warning about `requirement_policy/3`Todd Gamblin1-0/+1
`requirement_policy/3` is generated and may not be in Spack's inputs to Clingo. Currently this is causing warnings like: ``` $ spack spec zlib /global/u2/t/tgamblin/src/spack/lib/spack/spack/solver/concretize.lp:510:3-43: info: atom does not occur in any rule head: requirement_policy(Package,X,"one_of") /global/u2/t/tgamblin/src/spack/lib/spack/spack/solver/concretize.lp:517:3-43: info: atom does not occur in any rule head: requirement_policy(Package,X,"one_of") /global/u2/t/tgamblin/src/spack/lib/spack/spack/solver/concretize.lp:523:3-43: info: atom does not occur in any rule head: requirement_policy(Package,X,"any_of") /global/u2/t/tgamblin/src/spack/lib/spack/spack/solver/concretize.lp:534:3-43: info: atom does not occur in any rule head: requirement_policy(Package,X,"any_of") Input spec -------------------------------- zlib Concretized -------------------------------- zlib@1.2.11%gcc@7.5.0+optimize+pic+shared arch=cray-sles15-haswell ``` - [x] Silence warning with `#defined requirement_policy/3`
2022-08-16Add variant to install jellyfish in krakenuniq. (#32174)dunatotatos1-1/+7
2022-08-16Configuration: allow users to enforce hard spec constraints (#27987)Peter Scheibel7-75/+545
Spack doesn't have an easy way to say something like "If I build package X, then I *need* version Y": * If you specify something on the command line, then you ensure that the constraints are applied, but the package is always built * Likewise if you `spack add X...`` to your environment, the constraints are guaranteed to hold, but the environment always builds the package * You can add preferences to packages.yaml, but these are not guaranteed to hold (Spack can choose other settings) This commit adds a 'require' subsection to packages.yaml: the specs added there are guaranteed to hold. The commit includes documentation for the feature. Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-08-16python: use base instead of prefix in `python/package.py`Todd Gamblin1-1/+1
2022-08-16Python: remove ensurepip variantAdam J. Stewart1-18/+1
2022-08-16celeritas: update checksum for git describe difference (#32000)Seth R. Johnson1-2/+2
* celeritas: update checksum for git describe difference Using `$Format:%h$` and the export-subst gitattribute property mean that the release checksum can change post release... ``` $ diff -ru spack-stage-celeritas-0.1.0-hv7ewpjouekqws2y5iaql2cnp6tn76iz/ spack-stage-celeritas-0.1.0.wtf-ynyck3df2a7kkgkqrpwapgz3l2i62omz/ diff -ru spack-stage-celeritas-0.1.0-hv7ewpjouekqws2y5iaql2cnp6tn76iz/spack-src/cmake/CgvFindVersion.cmake spack-stage-celeritas-0.1.0.wtf-ynyck3df2a7kkgkqrpwapgz3l2i62omz/spack-src/cmake/CgvFindVersion.cmake --- spack-stage-celeritas-0.1.0-hv7ewpjouekqws2y5iaql2cnp6tn76iz/spack-src/cmake/CgvFindVersion.cmake 2022-07-31 19:45:03.000000000 -0400 +++ spack-stage-celeritas-0.1.0.wtf-ynyck3df2a7kkgkqrpwapgz3l2i62omz/spack-src/cmake/CgvFindVersion.cmake 2022-07-31 19:45:03.000000000 -0400 @@ -75,7 +75,7 @@ # Get a possible Git version generated using git-archive (see the # .gitattributes file) - set(_ARCHIVE_TAG "HEAD -> master, tag: v0.1.0") + set(_ARCHIVE_TAG "tag: v0.1.0") set(_ARCHIVE_HASH "04fe945d9") set(_TAG_REGEX "v([0-9.]+)(-dev[0-9.]+)?") Binary files spack-stage-celeritas-0.1.0-hv7ewpjouekqws2y5iaql2cnp6tn76iz/v0.1.0.tar.gz and spack-stage-celeritas-0.1.0.wtf-ynyck3df2a7kkgkqrpwapgz3l2i62omz/v0.1.0.tar.gz differ ``` * celeritas: Use exported and re-uploaded tar.gz for reproducibility
2022-08-16e4s: add flecsi +cuda (#32158)eugeneswalker1-0/+1
2022-08-16e4s: add ascent +cuda (#32153)eugeneswalker1-0/+1
2022-08-16e4s: add amrex +cuda (#32152)eugeneswalker1-1/+2
2022-08-16podio, edm4hep: start to deprecate old versions (#32143)Thomas Madlener2-17/+85
2022-08-16direnv: add v2.32.1 (#32094)Alberto Invernizzi1-0/+1
2022-08-16e4s: add papi +rocm (#32150)eugeneswalker1-0/+1
2022-08-16e4s: add caliper +rocm (#32149)eugeneswalker1-0/+1
2022-08-15nlohmann-json: add v3.11.2 and make 'multiple_headers' the default (#31865)Florian Albrechtskirchinger1-1/+6
* nlohmann-json: add v3.11.2 * nlohmann-json: variant multiple_headers should be the default
2022-08-15CI/documentation: constrain pygments to avoid latest version (2.13.0) (#32163)Peter Scheibel1-0/+1
All PRs are failing the docs build on account of an error with pygments. These errors coincide with a new release of pygments (2.13.0) and restricting to < 2.13 allows the doc tests to pass, so this commit enforces that constraint for the docs build. Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-08-15Check that no reserved names are overridden by package recipes (#32092)Massimiliano Culpo1-0/+40
A few attribute in packages are meant to be reserved for Spack internal use. This audit checks packages to ensure none of these attributes are overridden. - [x] add additional audit check
2022-08-15llvm: fix ncurses/terminfo builds (#32028)Andrew W Elble1-1/+6
* llvm: fix ncurses/terminfo builds * use suggestion * formatting
2022-08-15tophat: fixing build issue with newer automakes (#32082)snehring1-0/+4
2022-08-15netpbm: new super stable version 10.73.40 (#32087)Olivier Cessenat1-0/+1
2022-08-15MFEM: Add an exceptions variant. (#32096)Eric Brugger1-0/+2
2022-08-15bridger: adding ncurses dep (#32103)snehring1-0/+1
2022-08-15quantum-espresso: adding some missing build deps (#32109)snehring1-0/+2
2022-08-15fix oce build failure due to change of intel-tbb default version (#32101)Satish Balay1-0/+2
In file included from /data/xsdkci/VS1mJQ1K/0/xsdk-project/spack-xsdk/spack-stage/balay/spack-stage-oce-0.18.3-rim5zhuacb7z4plxag52fjj3gbc4znv3/spack-src/src/OSD/OSD_Parallel.cxx:17: /data/xsdkci/VS1mJQ1K/0/xsdk-project/spack-xsdk/spack-stage/balay/spack-stage-oce-0.18.3-rim5zhuacb7z4plxag52fjj3gbc4znv3/spack-src/src/OSD/OSD_Parallel.hxx: In static member function 'static void OSD_Parallel::ForEach(InputIterator, InputIterator, const Functor&, Standard_Boolean)': /data/xsdkci/VS1mJQ1K/0/xsdk-project/spack-xsdk/spack-stage/balay/spack-stage-oce-0.18.3-rim5zhuacb7z4plxag52fjj3gbc4znv3/spack-src/src/OSD/OSD_Parallel.hxx:223:18: error: 'captured_exception' in namespace 'tbb' does not name a type 223 | catch ( tbb::captured_exception& anException ) | ^~~~~~~~~~~~~~~~~~ /data/xsdkci/VS1mJQ1K/0/xsdk-project/spack-xsdk/spack-stage/balay/spack-stage-oce-0.18.3-rim5zhuacb7z4plxag52fjj3gbc4znv3/spack-src/src/OSD/OSD_Parallel.hxx:225:38: error: 'anException' was not declared in this scope 225 | Standard_NotImplemented::Raise(anException.what()); | ^~~~~~~~~~~ /data/xsdkci/VS1mJQ1K/0/xsdk-project/spack-xsdk/spack-stage/balay/spack-stage-oce-0.18.3-rim5zhuacb7z4plxag52fjj3gbc4znv3/spack-src/src/OSD/OSD_Parallel.hxx: In static member function 'static void OSD_Parallel::For(Standard_Integer, Standard_Integer, const Functor&, Standard_Boolean)': /data/xsdkci/VS1mJQ1K/0/xsdk-project/spack-xsdk/spack-stage/balay/spack-stage-oce-0.18.3-rim5zhuacb7z4plxag52fjj3gbc4znv3/spack-src/src/OSD/OSD_Parallel.hxx:272:18: error: 'captured_exception' in namespace 'tbb' does not name a type 272 | catch ( tbb::captured_exception& anException ) | ^~~~~~~~~~~~~~~~~~ /data/xsdkci/VS1mJQ1K/0/xsdk-project/spack-xsdk/spack-stage/balay/spack-stage-oce-0.18.3-rim5zhuacb7z4plxag52fjj3gbc4znv3/spack-src/src/OSD/OSD_Parallel.hxx:274:38: error: 'anException' was not declared in this scope 274 | Standard_NotImplemented::Raise(anException.what()); | ^~~~~~~~~~~
2022-08-15unifyfs %oneapi: add CFLAGS=-Wno-unused-function to build environment (#32107)eugeneswalker2-2/+3
2022-08-15VTK-h: Patch VTK-h to build +shared+cuda (#32104)kwryankrattiger1-0/+2
2022-08-15swig: new version 4.1.dev1-fortran (#32135)Seth R. Johnson1-1/+6
2022-08-15e4s ci: enable trilinos@13.4.0 +cuda build, issues resolved (#32124)eugeneswalker1-1/+1
2022-08-15e4s ci: enable hpctoolkit +rocm (#32126)eugeneswalker1-1/+1
2022-08-15root: set CLING_STANDARD_PCH as in thisroot.sh (#32095)Valentin Volkl1-0/+3
* root: set CLING_STANDARD_PCH as in thisroot.sh * root: also set CPPYY_API_PATH
2022-08-15curl: --with-pkg=prefix instead of --with-pkg (#31816)Harmen Stoppels1-13/+5
2022-08-15gaudi: new version 36.7 (#32116)Wouter Deconinck1-0/+1
Small bugfix release, https://gitlab.cern.ch/gaudi/Gaudi/-/compare/v36r6...v36r7. No changes to recipe needed.
2022-08-15py-numpy: add v1.23.2 (#32139)Adam J. Stewart1-0/+1
2022-08-14flex %oneapi: add -Wno-implicit-function-declaration (#32073)eugeneswalker1-0/+8
2022-08-14arpack-ng %oneapi: add -Wno-implicit-function-declaration (#32080)eugeneswalker1-0/+8
generated by cgit v1.2.3-70-g09d2 (git 2.46.0) at 2024-09-05 12:21:56 +0000