summaryrefslogtreecommitdiff
AgeCommit message (Collapse)AuthorFilesLines
2019-05-10paraview: Fix OpenGL search to ignore glvnd (#11400)Chuck Atkins1-0/+1
2019-05-10py-pauvr:new package (#11292)xfzhao1-0/+21
* py-pauvr:new package * py-pauvr: using url and Releases * py-pauvr: remove extra comments
2019-05-10permissions: preserve suid and sgid bits (#10727)Greg Becker2-0/+46
* Don't overwrite suid/sgid bits when setting permissions * add tests for permission setting
2019-05-10Intel packages: multiple installs and optional scalapack libs (#11384)Glenn Johnson1-1/+5
Add fixes to support multiple installs and dependents using a subset of IntelPackage functionality. * Update IntelPackage to only return scalapack libraries if the root spec depends on MPI: scalapack requires MPI to be mentioned as a dependency in the DAG. Package builds using intel-mkl for its blas/lapack implementations but not for scalapack were failing to build. Ideally it would be possible to ask if any of the packages in the DAG are actually requesting the scalapack functionality provided by the IntelPackage and only return scalapack libs in that case, but that is not easily done at this time. Fixes #11314 Fixes #11289 * set HOME when the intel silent installer is run. This prevents the installer from using the ~/intel directory (which can cause conflicts for multiple installs of the same IntelPackage) Fixes #9713
2019-05-09modules: use new `module` function instead of `get_module_cmd` (#8570)Greg Becker8-248/+118
Use new `module` function instead of `get_module_cmd` Previously, Spack relied on either examining the bash `module()` function or using the `which` command to find the underlying executable for modules. More complicated module systems do not allow for the sort of simple analysis we were doing (see #6451). Spack now uses the `module` function directly and copies environment changes from the resulting subprocess back into Spack. This should provide a future-proof implementation for changes to the logic underlying the module system on various HPC systems.
2019-05-10make license check more-strictPeter Josef Scheibel2-39/+93
The license text is now expected to match almost exactly (not accounting for formatting in different file types (e.g. rst vs. bash script vs. python)
2019-05-10update aom package licensePeter Josef Scheibel1-2/+10
2019-05-10update license date range for simgridPeter Josef Scheibel1-1/+1
2019-05-10dyninst: update cmake args and boost dependency (#11378)Mark W. Krentel1-8/+18
* Starting with the upcoming 10.1 release, Dyninst changed the names of some cmake args to camel case: LIBELF_* to LibElf_* and LIBDWARF_* to LibDwarf_*. This change is needed now for @develop and will be used for 10.1 when it is released. * New versions of Dyninst now requires cmake version 3.4.0 or later. * Restrict boost dependency version to < 1.70.0 to avoid build error
2019-05-09update to texlive 2019 (#11365)David Gardner1-2/+2
2019-05-10elpa: override headers prop for common include-dir localizationTiziano Müller4-19/+24
... and apply this in SIRIUS, CP2K & QE. Thanks to @scheibelp for the idea.
2019-05-10packages/cp2k: require libxsmm 1.11+Tiziano Müller1-1/+2
2019-05-10packages/cp2k: build with -ggdb with GNU for backtracesTiziano Müller1-1/+5
2019-05-10packages/cp2k: add support for siriusTiziano Müller1-1/+27
2019-05-10packages/json-fortran: initial commit, required by CP2K+siriusTiziano Müller1-0/+21
2019-05-10packages/sirius: initial commitTiziano Müller3-0/+145
2019-05-10packages/libvdwxc: initial commit, required for SIRIUSTiziano Müller1-0/+53
2019-05-09Clean up mercury package and add boostsys, shared variants (#11368)Jerome Soumagne1-76/+60
Use tarballs instead of git tags Fix openpa dependency on gcc < 4.9 Fix boost dependency Change sm variant default to true
2019-05-09nco: Add 4.7.9 (#11389)Michael Kuhn1-1/+4
Earlier versions do not compile with gcc@9.
2019-05-09netcdf: Fix build if curl is not installed (#11387)Michael Kuhn1-0/+14
For 4.7.0, configure fails if curl is not installed.
2019-05-09qt: Fix build with gcc@9 (#11391)Michael Kuhn1-0/+6
2019-05-09papi: Add 5.7.0 (#11390)Michael Kuhn1-1/+2
This also fixes the GCC patch to be applied for versions 8 and up.
2019-05-09gcc: Add 9.1.0 (#11386)Michael Kuhn1-0/+3
2019-05-09mesa: Add missing dependencies (#11394)Michael Kuhn1-0/+3
2019-05-08Make CODE_OF_CONDUCT.md more Spack-specific (#11403)Todd Gamblin1-2/+2
2019-05-08qt: sqlite needs to be a run dep because of the qt plugin infrastructure ↵Chuck Atkins1-1/+1
(#11399)
2019-05-08mesa: Add 19.0.{1,2,3} (#11401)Chuck Atkins1-4/+7
2019-05-08nut: fix nut build (#11393)Christoph Junghans1-1/+0
2019-05-08Provide a patched version of random123 that will work on ARM platforms (#11388)Kelly (KT) Thompson2-0/+14
+ The additional patch enables a non-optimized random123 code path that will work on ARM architectures. This solution is provided only for version 1.09 to allow the most current version of Random123 to function on ARM architectures. + A more complete, long term solution will be the addition of a native ARM intrinsics-based implementation of random123. This solution is being worked on but it is several weeks or months away. Once the full implementation is available it will be provided to the author/maintainer of Random123.
2019-05-08Hide some variables in spack-build.env fileSeth R Johnson1-2/+6
Don't arbitrarily reset PWD and OLDPWD when sourcing, as well as other session-specific IDs
2019-05-08llvm: Adjust default supported targetsChuck Atkins1-5/+4
The default install for llvm should just be the common typical case, i.e. support for local host and cpu architectures. Enablingsupport for the wide array of auxiliary architectures should be explicit rather than implicit.
2019-05-07Add OpenBLAS 0.3.6 (#11375)Janne Blomqvist1-0/+1
Signed-off-by: Janne Blomqvist <janne.blomqvist@aalto.fi>
2019-05-07py-scikit-learn: needs setuptools (#11379)Levi Baber1-0/+1
2019-05-07hpcviewer: add version 2019.04 (#11380)Mark W. Krentel1-2/+11
2019-05-07ninja: drop python as a run dep (#11347)Chuck Atkins3-2/+8
* ninja: Make python a build-only dependency * ninja, ninja-fortran: allow the packages to provide eachother
2019-05-07py-pysam: update (#11377)xfzhao1-0/+2
2019-05-07Environment path sanitization and sourcing (#8476)Chris Green3-7/+208
Add two functions to the EnvironmentModifications object to help users sanitize environment variables in their package definitions: * deprioritize_system_paths: this keeps system paths in the environment variable but moves them to the end. * prune_duplicate_paths: remove any duplicate paths from the variable This includes testing for the new functions as well as for (previously-untested) old convenience functions for environment variable manipulation. This also adds special handling for bash functions so they will be defined when the exported environment file is sourced.
2019-05-07New package: CCfits (#11262)Felix Niederwanger1-0/+22
2019-05-06Mesa should depend_on('glproto') (#11360)George Hartzell2-0/+37
* Mesa should depend_on('glproto') The mesa package refers to `GL/glproto.h`. On systems that don't have the OS packages installed, this leads to failures during the build [e.g. this comment in 01482](https://github.com/spack/spack/pull/10482#issuecomment-488786745). This fixes it. Tested on a minimally provisioned CentOS 7. * Constrain glproto prereq to when +glx * mesa: make glproto a build only dep
2019-05-07SLATE package: fix variant/header errors (#11353)G-Ragghianti1-9/+2
* The 'mkl' variant implementation was not complete and was preventing the package from building, so remove it. * The slate.hh file has moved in the 'develop' version (which is currently the only version of SLATE listed)
2019-05-06FAODEL: Add FAODEL package to spack (#11323)Todd Kordenbrock4-0/+201
* FAODEL: Add FAODEL package to spack FAODEL (Flexible, Asynchronous, Object Data-Exchange Libraries) is a collection of software libraries that are used to implement different data management services on high-performance computing (HPC) platforms. This project is part of the Advanced Technology Development and Mitigation (ATDM) effort for NNSA's ASC program at Sandia National Laboratories. (cherry picked from commit 6afe045d25b5c000b612116a5695aebbec56b61a) * FAODEL: Update FAODEL package Dependencies: set minimum versions for boost, cmake and libfabric Dependencies: add conflict for boost v1.59.0 Patch: add a patch for v1.1803.1 Patch: add a when= for the v1.1811.1 specific patches Compiler: check for C++11 support in gcc (cherry picked from commit fb6ed2b3cf20d7e4fff647cba5a70887a78f627f) * FAODEL: Update FAODEL package * replace previous maintainers with @tkordenbrock and @craigulmer * default to shared libs to meet Spack policy * increase min boost version to 1.60.0 and remove boost 1.59.0 conflict * replace complex version check with conflict for gcc <= 4.8.0 (C++11 support required) * set type=build for cmake * enable googletest for all versions with type=build * enable tests for for all versions except when MPI is disabled * FAODEL: Update FAODEL package * add version v1.1811.2 * limit comment line length
2019-05-07Turbine package: add m4 dependency (#10948)Justin M Wozniak1-0/+1
m4 is a build and run dependency for Turbine: it is used at run time to generate scheduler job files for the workflows.
2019-05-04omega-h package: add version 9.27.0 (#11366)Cameron Smith1-0/+1
2019-05-04py-yt package: add versions 3.5.0, 3.5.1, 4.0 development branch (#11350)Bili Dong1-1/+4
2019-05-04Binary caches on MacOS - allow expanded RPATHs (#11345)Patrick Gartung2-0/+37
Fixes #11335 Update the Spack compiler wrappers to add the headerpad_max_install_names linker flag on MacOS. This allows the install_name_tool to rewrite the RPATH entry of the binary to be longer if needed. This is primarily useful for creating and distributing binary caches of packages (i.e. using the "spack buildcache" command); binary caches created on MacOS before this commit may not successfully relocate (if the target root path is larger).
2019-05-04cURL package: add gssapi option (#11344)cedricchevalier191-0/+5
This option allows curl and its dependents (git, ...) to work with proxy using Kerberos authentification.
2019-05-04New package: GMTSAR (#11315)Sinan1-0/+20
2019-05-04Nek5000: Fix CFLAGS and FFLAGS handling (#11339)Thilina Rathnayake1-2/+2
2019-05-04New package: PASTA (#11338)Justin S1-0/+41
2019-05-04rJava package: add version 0.9-11 (#11334)Sinan1-0/+1