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2023-03-07fslsfonts: add v1.0.6 (#35869)Alec Scott1-0/+1
2023-03-07gatk: add v4.3.0.0 (#35864)Alec Scott1-0/+1
2023-03-07fstobdf: add v1.0.7 (#35870)Alec Scott1-0/+1
2023-03-07update SPERR package (#35810)Samuel Li1-7/+11
* update SPERR package * remove blank line * update SPERR package * remove blank line --------- Co-authored-by: Samuel Li <Sam@Navada>
2023-03-07py-pytorch-lightning: add v1.9.4 (#35791)Adam J. Stewart1-0/+1
2023-03-07py-pytorch-lightning: torch~distributed not supported in 1.9.0 (#35809)Adam J. Stewart1-0/+2
2023-03-07cloog: add v0.18.4 (#35849)Alec Scott1-0/+1
2023-03-07dnsmasq: add v2.89 (#35851)Alec Scott1-0/+1
2023-03-07sundials: add new version (#35796)Cody Balos1-0/+1
2023-03-07cmocka: add v1.1.7 (#35848)Alec Scott1-0/+1
2023-03-07apr: add v1.7.2, apr-util 1.6.3 (#35832)Alec Scott2-0/+2
* apr: add v1.7.2 * apr-util: add v1.6.3
2023-03-07awscli: add v1.27.84 (#35836)Alec Scott2-1/+4
* awscli: add v1.27.84 * Add botocore dependency to awscli * Update var/spack/repos/builtin/packages/awscli/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Add py-botocore@1.29.84 dependency --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-03-07cget: add v0.2.0 (#35846)Alec Scott1-0/+1
2023-03-07bc: add v1.07.1 (#35844)Alec Scott1-0/+1
2023-03-07code-server: add v4.10.1 (#35855)Alec Scott1-0/+1
2023-03-07easybuild: add v4.7.0 (#35853)Alec Scott4-7/+11
* easybuild: add v4.7.0 * Add v0.4.7 to all easybuild dependencies * Reorder versions newest to oldest * Fix styling on easybuild dependency loop
2023-03-07dash: add v0.5.12 (#35850)Alec Scott1-0/+1
2023-03-07colordiff: add v1.0.21 (#35847)Alec Scott1-0/+1
2023-03-07aspell: add v0.60.8 (#35834)Alec Scott1-0/+1
2023-03-07Update biopython, gsd, and griddataformats (#35827)Rocco Meli3-8/+44
* update mda dependencies * apply black * Update var/spack/repos/builtin/packages/py-gsd/package.py * Update var/spack/repos/builtin/packages/py-griddataformats/package.py * Update var/spack/repos/builtin/packages/py-griddataformats/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * remove numpy upper bound * Update var/spack/repos/builtin/packages/py-griddataformats/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-gsd/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-03-07beforelight: add v1.0.6 (#35843)Alec Scott1-0/+1
2023-03-07busybox: add v1.36.0 (#35840)Alec Scott1-0/+1
2023-03-07bitmap: add v1.1.0 (#35839)Alec Scott1-0/+1
2023-03-07blktrace: add v1.3.0 (#35842)Alec Scott1-0/+1
2023-03-07bmake: add v20230303 (#35841)Alec Scott1-0/+1
2023-03-07atk: add v2.38.0 (#35833)Alec Scott1-0/+1
2023-03-07appres: add v1.0.6 (#35831)Alec Scott1-0/+1
2023-03-07ace: add v7.1.0 (#35829)Alec Scott1-0/+1
2023-03-07alglib: add v3.20.0 (#35830)Alec Scott1-0/+1
2023-03-06py-matplotlib: add v3.7.1 (#35822)Adam J. Stewart1-0/+1
2023-03-06Proj: to CMake (#35108)John W. Parent1-17/+39
* update proj * re-add autotools support * style * Setup env in builders * Drop direct windows conflict for older versions * Default to CMake Add new style class definiton * Proj: setup_run_environment in package not builder * Proj: move run env changes to pkg, rm cmake arg * Set PROJ_LIB during build * Style * Rm redundant configure arg
2023-03-06compiler flags: fix multiple compilers with different flags (#35721)Greg Becker3-2/+27
Currently, if two compilers with the same spec differ on the flags, the concretizer will: 1. mix both sets of flags for the spec in the ASP program 2. error noting that the set of flags from the compiler (both of them) doesn't match the set from the lower priority compiler This PR fixes both -- only flags from the highest priority compiler with a given spec are considered.
2023-03-06py-elasticsearch: new versions (#35764)Erik Heeren2-1/+29
* py-elasticsearch: new versions Also add py-elastic-transport as a new dependency * py-elasticsearch: py-urllib3 is no longer a dependency * Update var/spack/repos/builtin/packages/py-elasticsearch/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-03-05Add Hugo v0.111.1 (#35824)Alec Scott1-0/+1
2023-03-05curl: add v7.88.1 and deprecate previous versions due to CVEs (#35825)Alec Scott1-38/+198
* curl: add v7.88.1 and deprecate previous versions due to CVEs * Add self as a maintainer to curl
2023-03-05libarchive: add v3.6.2 and deprecate previous versions due to CVE-2022-36227 ↵Alec Scott1-8/+45
(#35826)
2023-03-05windows: use `sys.platform == "win32"` instead of `is_windows` (#35640)Todd Gamblin37-196/+133
`mypy` only understands `sys.platform == "win32"`, not indirect assignments of that value to things like `is_windows`. If we don't use the accepted platform checks, `mypy` registers many Windows-only symbols as not present on Linux, when it should skip the checks for platform-specific code.
2023-03-04py-simpervisor: correct pypi (#35785)Erik Heeren1-1/+1
2023-03-03Update python linting packages (#35811)MicK72-2/+8
* add 2.14.2 py-astroid version * add py-pylint 2.26.2 * fix black * fix py-dill depends_on Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * fix py-astroid minor versionning Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * modify typing_extensions depends_on --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-03-03Start using paths found in extra_rpaths in compilers.yaml when building (#35376)MatthewLieber1-1/+7
* Start using paths found in extra_rpaths in compilers.yaml when building * running black and changing maintainer list * changing import order to pass isort --------- Co-authored-by: Matthew Lieber <lieber.31@osu.edu>
2023-03-03Polish `spack.util.environment` (#35812)Massimiliano Culpo7-336/+341
Update `spack.util.environment` to remove legacy idioms. * Remove kwargs from method signature and use a class for traces * Uppercase a few global variables * spack.util.environment: add type-hints * Improve docstrings * Fixed most style issues reported by pylint
2023-03-03snakemake: added versions 7.19.0-7.22.0 (#35535)Lucas Frérot1-3/+13
* snakemake: added versions 7.19.0-7.22.0 * snakemake: corrected +reports dependencies
2023-03-03py-ipdb: updating versions (#35654)Loïc Pottier1-16/+12
* py-ipdb: updating versions Signed-off-by: Loïc Pottier <pottier1@llnl.gov> * py-ipdb: fixing versions problem and deleting 10.1 which is too old for Python > 3.6 Signed-off-by: Loïc Pottier <pottier1@llnl.gov> * Update var/spack/repos/builtin/packages/py-ipdb/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * py-ipdb: removed useless dependencies Signed-off-by: Loïc Pottier <pottier1@llnl.gov> * Update var/spack/repos/builtin/packages/py-ipdb/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-ipdb/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * py-ipdb: missing @ Signed-off-by: Loïc Pottier <pottier1@llnl.gov> * Update var/spack/repos/builtin/packages/py-ipdb/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Signed-off-by: Loïc Pottier <pottier1@llnl.gov> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-03-03CI: Fix timeout for VisIt and ParaView (#35787)kwryankrattiger1-0/+2
ref. #35400
2023-03-03update github URL (#35789)Jean Luca Bez1-2/+2
2023-03-03Update pyprecice v2.5.0.2 (#35788)Ishaan Desai1-0/+1
* Update versions 2.5.0.0 and 2.5.0.1 * Applying review changes * Updating incorrect checksum for v2.4.0.0 * Add for loop to define depends_on for preCICE versions and bindings versions * Formatting * Missing comma * Add pyprecice v2.5.0.2
2023-03-03py-jupyter-server-proxy: fix dependency condition (#35784)Erik Heeren1-2/+2
Too much copypasta
2023-03-02scons: add a new version (#35652)H. Joe Lee1-6/+2
* scons: add a new version * scons: address @adamjstewart review
2023-03-02Add e3sm scorpio (#35794)downloadico1-0/+54
* e3sm-scorpio: add e3sm-scorpio package This is the Scorpio package from the e3sm.org site. * fixed style errors * removed unneeded dependency on cmake
2023-03-02py-nbstripout: add new package (#35786)Adam J. Stewart1-0/+18
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