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2024-05-17fenics-dolfinx: add spdlog dependency (#44237)Garth N. Wells1-0/+1
2024-05-16Gitlab CI: Windows Configs (#43967)John W. Parent16-31/+220
Add support for Gitlab CI on Windows This PR adds the config changes required to configure and execute Gitlab pipelines running Windows builds on Windows runners using the existing Gitlab CI infrastructure (and newly added Windows infrastructure). * Adds support for generating child pipelines dispatched to Windows runners * Refactors the relevant pre-scripts, scripts, and post scripts to be compatible with Windows * Adds Windows config section describing Windows jobs * Adds VTK as Windows build stack (to be expanded later) * Modifies proj to build on Windows * Refactors Windows rpath symlinking to avoid system libs and externals --------- Co-authored-by: Ryan Krattiger <ryan.krattiger@kitware.com> Co-authored-by: Mike VanDenburgh <michael.vandenburgh@kitware.com> Co-authored-by: Todd Gamblin <tgamblin@llnl.gov> Co-authored-by: Scott Wittenburg <scott.wittenburg@kitware.com>
2024-05-16trilinos: catch kokkos inconsistency with trilinos (#44209)Paul Kuberry1-1/+26
* trilinos: catch kokkos inconsistency with trilinos * trilinos: update kokkos version range
2024-05-16Prefer llnl.util.symlink.readlink to os.readlink (#44126)John W. Parent16-28/+42
Symlinks on Windows can use longpath prefixes (\\?\); these are fine in the context of win32 API interactions but break numerous facets of Spack behavior that rely on string parsing/matching (archiving, binary distributions, tarball extraction, view regen, etc). Spack's internal readlink method (llnl.util.symlink.readlink) gracefully handles this by removing the prefix and otherwise behaving exactly as os.readlink does, so we should prefer that in all cases.
2024-05-16gaudi: Don't apply the patch if it has already landed upstream (#44180)Thomas Madlener1-0/+1
2024-05-16py-matplotlib: qualify when to do a post install (#44191)Howard Pritchard1-5/+15
* py-matplotlib: qualify when to do a post install Older versions of py-matplotlib don't seem to have some of the files that the post install step is trying to install. Looks like the files first appeared in 3.6.0 and later. Signed-off-by: Howard Pritchard <hppritcha@gmail.com> * Change install paths for older matplotlib --------- Signed-off-by: Howard Pritchard <hppritcha@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-05-16suite-sparse: improve setting of the `libs` property (#44214)Mosè Giordano1-1/+6
on some distros it is in lib64/
2024-05-15bugfix: add arg to `write_line_break()` in `spack_yaml` (#42727)Todd Gamblin1-2/+2
`ruamel`'s `Emitter.write_line_break()` method takes an extra argument that we forgot to implement in our custom emitter.
2024-05-15CoinHSL: Support the Meson build system and add new release (#43610)Andrew Lister1-36/+61
* Add maintainer and fix linting * allow for fewer deps in archive * use meson for archive packages * Fix version spec and f-string * fix blas dependency links * Add new release to spack * Fix checksums for latest release
2024-05-15iperf3: updated versions from 3.6 to 3.16 (#44152)dmagdavector1-2/+7
* Update version of iperf3 from 3.6 to 3.16 Spack currently only explicitly has version 3.6 of the iPerf3 package (out of ESnet / LBNL). This makes the default the latest version of 3.16, and adds some other versions (found in some Linux distros, for possible compatibility purposes). * iperf3: update to 3.17; update 3.6 hash for new url * protobuf: update hash for patch needed when="@3.4:3.21" * Revert "protobuf: update hash for patch needed when="@3.4:3.21"" This reverts commit 4d168d0b278039ac2b3c084b7df4c2ae7deb9d27.
2024-05-15Cdash reporting timeout (#44213)John W. Parent3-6/+8
* Add timeout to cdash reporter PUT request Add cdash timeout everywhere Correct mock responder api * Style * brief doc
2024-05-15unmaintained pkgs: bump versions 2024-05-10 (#44131)Alec Scott81-173/+224
* unmaintained pkgs: bump versions 2024-05-10 * openblas: fix satisfies syntax * pixman: add autotools dependencies * [@spackbot] updating style on behalf of alecbcs * pixman: revert * chapel: revert changes in favor of other PR * openblas: revert due to failing tests * Address review feedback for flint, biobam2, and pango * pango: add version comment about v2.0 * numactl: revert changes due to ppc4le bug * flint: remote duplicate configure arg Co-authored-by: Wouter Deconinck <wdconinc@gmail.com> * openvkl, rkcommon: remove commented maintainers template * flint: fix style --------- Co-authored-by: alecbcs <alecbcs@users.noreply.github.com> Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-05-15enable tensorflow-2.14 and 2.16 for spack built ROCm (#44095)afzpatel6-34/+846
* initial commit to enable tensorflow-2.14 for spack built ROCm * fix style errors * modify hipcc patch * updates for rocm 6.1 * updates for tf-rocm-enhanced 2.16 * fix styling * fix styling * add patch for 2.16 * add patch for 2.16 * Update var/spack/repos/builtin/packages/py-tensorflow/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * update rocm enhanced version names * changes for rocm-enhanced version name change * fix styling --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-05-15Fix gromacs installation with SVE. Issue 44062 (#44183)Paolo1-1/+1
* Fix gromacs installation with SVE. Issue 44062 * [@spackbot] updating style on behalf of paolotricerri * Remove `neoverse_n2` target We have removed the neoverse_n2 target as its detection is more involved compared to neoverse_v*.
2024-05-15gromacs: add 2024.2, 2023.5 (#44197)Carlos Bederián1-0/+2
2024-05-15VecGeom: new version 1.2.8 (#44179)Ben Morgan1-0/+5
2024-05-14nalu-wind: fix mistake (#44188)Jon Rood1-2/+2
2024-05-14exawind: updates to package to allow mixed device (#44159)Jon Rood2-39/+74
* exawind: updates to package to allow mixed device * Style. * Remove ninja variants. * Add conflict for amr-wind+hypre with mixed device. * Relax amr-wind~hypre requirement. * Move runtime variables to nalu-wind. * Update suggestions. * Remove umpire.
2024-05-14pkg-config: support apple-clang@15: (#44007)Alec Scott1-5/+6
2024-05-14rust: fix v1.78.0 instructions (#44127)Alec Scott1-0/+2
2024-05-14python: add 3.10.14, 3.9.19, 3.8.19 (#44162)Carlos Bederián1-0/+3
2024-05-14Added NCCL version 2.21.5-1 (#44158)Zachary Newell1-0/+1
2024-05-14Update bash 5.2 patches (#44172)Derek Ryan Strong1-0/+11
2024-05-14Add zsh 5.8.1 and 5.9 (#44173)Derek Ryan Strong1-0/+2
2024-05-14Add newer fish versions (#44174)Derek Ryan Strong1-0/+5
2024-05-14Add file 5.45 (#44175)Derek Ryan Strong1-0/+1
2024-05-14Add man-db 2.12.0 and 2.12.1 (#44176)Derek Ryan Strong1-0/+2
2024-05-13amr-wind: add latest versions and correct waves2amr details (#44099)Michael B Kuhn1-2/+8
* add latest versions and correct waves2amr details * update commit associated with v2.1.0
2024-05-13ML CI: update image (#43751)Adam J. Stewart3-4/+4
* ML CI: update image * Use main branch * Use tagged version
2024-05-13fujitsu-mpi package: help CMake find wrappers (#43979)jdomke1-0/+10
Set MPI_C_COMPILER etc. env vars when building with fujitsu-mpi, which override CMake logic. Without using these variables to explicitly request the Fujitsu MPI wrappers, the builtin CMake logic is unwilling to use these wrappers unless the Fujitsu compiler is used, but they should be used for %clang as well. This avoids patching CMake module files like in #16864, primarily to avoid the possibility of altering behavior for specs that do not use %fj or ^fujitsu-mpi.
2024-05-13glibc: detect from "Free Software Foundation" not "gnu" (#44154)Harmen Stoppels1-2/+2
which should be more generic
2024-05-13yosys: add v0.41 (#44153)Dave Keeshan1-0/+1
2024-05-13cdt: Add version 1.4.1 (#44155)Julien Cortial1-0/+1
2024-05-13justbuild: add version 1.3.0 (#44148)Alberto Sartori1-0/+1
2024-05-13nalu-wind: updates (#44046)Jon Rood1-40/+37
2024-05-13gaudi: upstream patch when @38.1 for missing #include <list> (#44121)Wouter Deconinck1-0/+5
* gaudi: upstream patch when @38.1 for missing #include <list> * gaudi: apply list patch for all versions
2024-05-13spack uninstall: improve error message for dependent environment (#44149)Greg Becker1-0/+2
2024-05-13whip: Add 0.3.0 (#44146)Mikael Simberg1-0/+1
Co-authored-by: Mikael Simberg <simbergm@cscs.ch>
2024-05-13spack checksum: do not add expand=False to wheels (#44118)Adam J. Stewart1-11/+1
2024-05-12llvm: add 18.1.5, 18.1.4 (#44123)Paul R. C. Kent1-0/+2
2024-05-12R: common package updates for 4.4.0 (#44088)bk6-2/+25
* r-ggplot2: v3.5.1, r-haven: v2.5.4, r-jsonlite: v1.8.8, r-pkgload: v1.3.4, r-vctrs: v0.6.5 * r-scales: v1.3.0
2024-05-12Add applications to aws-pcluster-* stacks (#43901)Stephen Sachs5-38/+73
* Add openfoam to aws-pcluster-neoverse_v1 stack * Add more apps to aws-pcluster-x86_64_v4 stack * Remove WRF while hdf5 cannot build in buildcache at the moment * Update comment * Add more apps for aws-pcluster-neoverse_v1 stack * Remove apps that currently do not build * Disable those packages that won't build * Modify syntax such that correct cflags are used * Changing syntax again to what works with other packages * Fix overriding packages.yaml entry for gettext * Use new `prefer` and `require:when` clauses to clarify intent * Use newer spack version to install intel compiler This removes the need for patches and makes sure the `prefer` directives in `package.yaml` are understood. * `prefer` not strong enough, need to set compilers * Revert "Use newer spack version to install intel compiler" This reverts commit ecb25a192cc430ca946415108847d637b4000795. Cannot update the spack version to install intel compiler as this changes the compiler hash but not the version. This leads to incompatible compiler paths. If we update this spack version in the future make sure the compiler version also updates. Tested-by: Stephen Sachs <stesachs@amazon.com> * Remove `prefer` clause as it is not strong enough for our needs This way we can safely go back to installing the intel compiler with an older spack version. * Prefer gcc or oneapi to build gettext * Pin gettext version compatible with system glibc-headers * relax gettext version requirement to enable later versions * oneapi cannot build older gettext version
2024-05-12whizard: Add version 3.1.4 (#43045)Juan Miguel Carceller1-1/+3
* whizard: Add a patch to fix builds with pythia8 >= 8.310 * Add whizard 3.1.4 and update accordingly --------- Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2024-05-12octave: use pcre2 for @8: (#42636)Alex Richert1-1/+6
* octave: use pcre2 for @8: * Add 'pcre2' variant to octave to control pcre vs. pcre2 * Update var/spack/repos/builtin/packages/octave/package.py Co-authored-by: Alec Scott <hi@alecbcs.com> --------- Co-authored-by: Alex Richert <alexander.richert@noaa.gov> Co-authored-by: Alec Scott <hi@alecbcs.com>
2024-05-12fastjet: Add a cxxstd variant (#44072)Juan Miguel Carceller1-0/+13
* fastjet: Add a cxxstd variant * Use f-strings * Add multi=False --------- Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2024-05-12clang: support cxx20_flag and cxx23_flag (#43438)Wouter Deconinck2-1/+33
* clang: support cxx20_flag and cxx23_flag * clang: coverage test cxx{}_flag and c{}_flag additions
2024-05-11Bump version on `develop` to v0.23dev0 (#44137)Todd Gamblin1-1/+1
2024-05-11changelog: add changes form 0.21.1 and 0.21.2 (#44136)Todd Gamblin1-0/+45
These changes were added to the release branch but did not make it onto `develop`.
2024-05-11oci: improve default_retry (#44132)Harmen Stoppels1-3/+12
Apparently urllib can throw a range of different exceptions: 1. HTTPError 2. URLError with e.reason set to the actual exception 3. TimeoutError from getresponse, which is not wrapped
2024-05-10qpdf: new package (#44066)James Taliaferro1-0/+45
* New package: qpdf * Update var/spack/repos/builtin/packages/qpdf/package.py Co-authored-by: Alec Scott <hi@alecbcs.com> * Fix format of cmake_args --------- Co-authored-by: Alec Scott <hi@alecbcs.com>