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2023-01-10pgplot: Correct building shared libraries (#34846)Erik Schnetter1-3/+7
2023-01-10simulationio: Explicitly enable/disable support for dependent packages (#34803)Erik Schnetter1-4/+8
* simulationio: Explicitly enable/disable support for dependent packages * simulationio: Remove unused local variable
2023-01-09rocm packages: Update the version for 5.3.0 release (#33405)Sreenivasa Murthy Kolam13-18/+300
* update the version for 5.3.0 release * update the rocwmma for 5.3.0 release * fix the +hip variant * update the version for rocm-openmp-extras package for 5.3.0 release * update the hipsolver and hipfft as per review comments * address review comments * revert changes to mivisionx with regard to change added for clangrt * fix for the petsc failure
2023-01-09mpiwrapper: New version 2.10.1 (#34850)Erik Schnetter1-0/+1
2023-01-09py-black: add v22.12.0 (#34429)Adam J. Stewart1-2/+7
2023-01-09MAFFT: Add latest version 7.505 (#34855)Rémi Lacroix1-0/+1
2023-01-09pv: Add version 1.6.20 (#34854)Rémi Lacroix1-0/+1
2023-01-09RVS 5.1.0 and later works with googletest shared variant (#34802)renjithravindrankannath1-1/+1
2023-01-09Remove Spack external find from startupJohn Parent1-1/+0
Spack was running an external detection of Python during each invocation of the setup script for Windows CMD/PWSH, which has dramatic performance implications each time the script is invoked, and is completely unneccesary. Remove this operation.
2023-01-09Update haspywinJohn Parent1-0/+1
Inform user Spack is installing pyWin32 module behind the scenes. This is neccesary for Windows support.
2023-01-09Support ASCI controlJohn Parent2-0/+62
Windows CMD prompt does not automatically support ASCI color control characters on the console from Python. Enable this behavior by accessing the current console and allowing the interpreation of ASCI control characters from Python via the win32 API.
2023-01-09openfoam: OneAPI is only supported from 2106 onwards (#34797)Stephen Sachs1-1/+4
Also, adios2 fortran bindings are not necessary. This circumvents https://github.com/spack/spack/issues/31817 Co-authored-by: Stephen Sachs <stesachs@amazon.com>
2023-01-09Revert "Allow spec.json files to be clearsigned, use transparent compression ↵Harmen Stoppels5-255/+158
for *.json (#34490)" (#34856) This reverts commit 8a1b81797834dd04de883c767867e2f85d45c9c4.
2023-01-08adding 3rd bunch of nf-core deps from update/nextflow-tools (#34563)Marco De La Pierre17-0/+359
* adding 2nd bunch of nf-core deps from update/nextflow-tools * adding 3rd bunch of nf-core deps from update/nextflow-tools * Update var/spack/repos/builtin/packages/py-dnspython/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-dnspython/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-dnspython/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-fastapi-utils/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-pastedeploy/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-pebble/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-fastapi/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-fastapi/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-gunicorn/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-starlette/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-starlette/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-starlette/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-parsley/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-paste/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-paste/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * py-gxformat2: added comment * py-lagom: now using github tarballs * fix for py-lagom * adding missing deps to py-fastapi-utils * another fix to py-lagom * Update var/spack/repos/builtin/packages/py-dnspython/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-fastapi-utils/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-fastapi-utils/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-fastapi-utils/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-lagom/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-supervisor/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-01-07GDAL: add v3.6.2 (#34823)Adam J. Stewart1-0/+1
2023-01-07acts: new version 22.0.0 (#34826)Wouter Deconinck1-0/+1
No build system changes.
2023-01-07Allow spec.json files to be clearsigned, use transparent compression for ↵Harmen Stoppels5-158/+255
*.json (#34490) This commit allows (remote) spec.json files to be clearsigned and gzipped. The idea is to reduce the number of requests and number of bytes transferred
2023-01-06Adding recipes for py-qutip and py-qutip-qip (#34835)Marco De La Pierre2-0/+51
* added recipes for py-qutip and py-qutip-qip * small fix * updated qutip 2x versions * py-qutip-qip: tarball url from github * style fix in py-qutip-qip * Update var/spack/repos/builtin/packages/py-qutip-qip/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-qutip-qip/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-qutip-qip/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-qutip/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-qutip/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-01-06Adding py-pennylane from Xanadu (#34838)Marco De La Pierre3-0/+80
* draft for py-pennylane recipe * first draft for py-strawberryfields recipe * minimal fix * small fixes * accounting for circular dep in py-pennylane and py-pennylane-lightning * removing py-strawberryfields from this branch * updated versions for py-pennylane 2x * needs cmake * py-pennylane-lightning using github tarball * Update var/spack/repos/builtin/packages/py-autoray/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-pennylane-lightning/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-01-06kripke: add cuda and rocm support (#34257)Verinder Rana1-12/+60
2023-01-06py-instrain and py-drep: new version and added maintainer (#34581)Luke Diorio-Toth2-0/+5
2023-01-06Fix PrgEnv detection (#34845)QuellynSnead1-1/+1
* Fix PrgEnv detection for Cray compiler link paths
2023-01-06mpiwrapper: New version 2.10.0 (#34795)Erik Schnetter1-0/+2
2023-01-06cni-plugins: New version 1.1.1 (#34809)Erik Schnetter1-0/+1
2023-01-06conmon: New version 2.1.5 (#34810)Erik Schnetter1-0/+1
2023-01-06go-md2man: New version 2.0.2 (#34811)Erik Schnetter1-0/+1
2023-01-06go: New version 1.19.4 (#34812)Erik Schnetter1-0/+1
2023-01-06libseccomp: New version 2.5.4 (#34814)Erik Schnetter1-0/+1
2023-01-06slirp4netns: New version 1.2.0 (#34816)Erik Schnetter1-3/+4
2023-01-06podman: New version 4.3.1 (#34817)Erik Schnetter2-0/+25
2023-01-06mpitrampoline: New version 5.2.0 (#34796)Erik Schnetter1-0/+2
2023-01-06Fix the version number for the fmt dep of pika package (#34839)Auriane R1-2/+2
* Fix the version number for the fmt dep of pika package * Add version constraint for fmt standard specification
2023-01-05cabana: version ranges (#34794)Harmen Stoppels1-1/+1
Co-authored-by: Sam Reeve <6740307+streeve@users.noreply.github.com>
2023-01-05cmake fails with icpc warning (#34774)Stephen Sachs1-0/+7
The Intel compiler isn't able to deal with noinline member functions of template classses defined in headers. As such it outputs ``` warning #2196: routine is both "inline" and "noinline" ``` cmake bootstrap will fail due to the word 'warning'. See spack/var/spack/repos/builtin/packages/protobuf/intel-v2.patch for reference. The issue does not appear with intel@2021.7.0 or later: ``` $~: compiler=/shared/spack/opt/spack/linux-amzn2-x86_64_v3/gcc-12.2.0/intel-oneapi-compilers-2022.2.0-uqvb2553zy5toeapvoopacndd27x6p5m/compiler/2022.2.0/linux/bin/intel64/icpc $~: $compiler unique.c icpc: remark #10441: The Intel(R) C++ Compiler Classic (ICC) is deprecated and will be removed from product release in the second half of 2023. The Intel(R) oneAPI DPC++/C++ Compiler (ICX) is the recommended compiler moving forward. Please transition to use this compiler. Use '-diag-disable=10441' to disable this message. ``` This is a clean version of https://github.com/spack/spack/pull/34167 Co-authored-by: Stephen Sachs <stesachs@amazon.com>
2023-01-05spack.dependency: add type hints (#34807)Massimiliano Culpo2-18/+27
2023-01-05Typo in `arbor/package.py`: incorrect version (#34820)Brent Huisman1-1/+1
2023-01-04package/libproxy: fix py3 install (#34431)Sinan1-3/+15
* package/libproxy: fix py3 install * improve readability * fix bug * also add extend * make flake happy * [@spackbot] updating style on behalf of Sinan81 * Update var/spack/repos/builtin/packages/libproxy/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * python dependency implied by extends const. * disable python variant by default * add run_env, add py conflict * Update var/spack/repos/builtin/packages/libproxy/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * set env for macos as well * generalize lib dir detection Co-authored-by: sbulut <sbulut@3vgeomatics.com> Co-authored-by: Sinan81 <Sinan81@users.noreply.github.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-01-04Fix building docsMassimiliano Culpo2-2/+9
2023-01-04Add vendored packages backMassimiliano Culpo154-0/+41107
2023-01-04Delete outdated externalsMassimiliano Culpo187-56425/+0
2023-01-04Use "vendoring" to manage 3rd party dependenciesMassimiliano Culpo10-70/+92
2023-01-04add_new_package: py-file-magic (#34486)Sinan1-0/+18
* add_new_package: py-file-magic * re-order depends... * Update var/spack/repos/builtin/packages/py-file-magic/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * [@spackbot] updating style on behalf of Sinan81 Co-authored-by: sbulut <sbulut@3vgeomatics.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Sinan81 <Sinan81@users.noreply.github.com>
2023-01-04Add py-svgpath and py-trimesh (#34471)Erik Heeren4-0/+111
* Add py-svgpath and dependency * Update copyright expiration * [@spackbot] updating style on behalf of heerener * Process review remarks * Update var/spack/repos/builtin/packages/py-trimesh/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Fix style issue * py-trimesh: cleanup and optional dependencies * Fix formatting issue * py-trimesh: complete dependency list for easy variant Two new packages: py-mapbox-earcut and py-pycollada * Some more missing dependencies Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-01-04e4s: move default values for rocm/cuda arch into packags:all:variants (#34772)Harmen Stoppels1-65/+58
2023-01-04set PREFIX in make() for some packages (#34773)Harmen Stoppels2-2/+4
2023-01-04Remove dead code that was needed for the old parser (#34792)Massimiliano Culpo1-7/+0
The old to token definitions and spec_id_re regular expression are not used anymore
2023-01-04Fix libvterm and libtermkey packages (#34776)Alberto Invernizzi2-4/+15
* fix PREFIX for both libvterm and libtermkey * minor: use libtool from dependency * switch to command-line prefix instead of replacing it in Makefile
2023-01-03new package: py-kb-python + dependencies (#34737)Glenn Johnson4-0/+119
* new package: py-kb-python + dependencies - py-loompy - py-ngs-tools - py-numpy-groupies * Update var/spack/repos/builtin/packages/py-kb-python/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-01-03py-shortuuid: add version 1.0.11 (#34739)Glenn Johnson1-2/+5
* py-shortuuid: add version 1.0.11 * Update var/spack/repos/builtin/packages/py-shortuuid/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-01-03LLVM: Update HWLOC dep version (#34780)kwryankrattiger1-0/+1
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