summaryrefslogtreecommitdiff
AgeCommit message (Collapse)AuthorFilesLines
2024-02-07s4pred: add new package (#42520)George Young1-0/+45
2024-02-07dbcsr: examples variant (#42543)Rocco Meli1-0/+5
2024-02-07cp2k+mpi requires dbcsr+mpi (#42545)Rocco Meli1-0/+1
2024-02-07julia: fix self-referential dependencies (#42486)Massimiliano Culpo1-1/+1
2024-02-07netcdf-c: fix self-referential dependencies (#42528)Massimiliano Culpo1-1/+1
2024-02-07lammps: fix self-referential dependencies (#42521)Massimiliano Culpo1-3/+4
2024-02-06molgw: fix self-referential dependencies (#42523)Massimiliano Culpo1-3/+5
2024-02-06ldak: fix self-referential dependencies (#42522)Massimiliano Culpo1-3/+3
2024-02-06TAU: Added new test for other variants. (#42503)jalcaraz1-1/+66
Now it tests all GPUs, syscall and python.
2024-02-06mesa: updating llvm dependency for version 23 (#42481)renjithravindrankannath1-0/+1
2024-02-06dbcsr: fix self-referential dependencies (#42482)Massimiliano Culpo1-1/+1
2024-02-06hpx: remove self-referential dependencies (#42485)Massimiliano Culpo1-5/+4
This shouldn't be an issue, but avoid self references on "^asio".
2024-02-05keepassxc: new version 2.7.6 (#42478)Olivier Cessenat1-0/+2
AUTOTYPE is set by default in the 2.7.6 release, it was not previously.
2024-02-05py-pythran: apply patch to fix compilation with GCC 13 (#42490)Mosè Giordano1-0/+7
* py-pythran: apply patch to fix compilation with GCC 13 * Update var/spack/repos/builtin/packages/py-pythran/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-02-05edm4hep: add v0.10.4 (#42488)Thomas Madlener1-0/+1
2024-02-05hh-suite: apply patch to fix compilation with GCC 13 (#42489)Mosè Giordano1-0/+6
This fixes errors like ``` 294 In file included from /build_stage/spack-stage-hh-suite-3.3.0-4kkv3zqhcadpubeo63l73xq3shr7gjmh/spack-src/src/a3m_compress.cpp:8: >> 295 /build_stage/spack-stage-hh-suite-3.3.0-4kkv3zqhcadpubeo63l73xq3shr7gjmh/spack-src/src/a3m_compress.h:37:37: error: 'uint16_t' has not been declared 296 37 | void writeU16(std::ostream& file, uint16_t); 297 | ^~~~~~~~ >> 298 /build_stage/spack-stage-hh-suite-3.3.0-4kkv3zqhcadpubeo63l73xq3shr7gjmh/spack-src/src/a3m_compress.h:38:28: error: 'uint16_t' has not been declared 299 38 | void readU16(char** ptr, uint16_t &result); 300 | ^~~~~~~~ >> 301 /build_stage/spack-stage-hh-suite-3.3.0-4kkv3zqhcadpubeo63l73xq3shr7gjmh/spack-src/src/a3m_compress.h:40:37: error: 'uint32_t' has not been declared 302 40 | void writeU32(std::ostream& file, uint32_t); 303 | ^~~~~~~~ >> 304 /build_stage/spack-stage-hh-suite-3.3.0-4kkv3zqhcadpubeo63l73xq3shr7gjmh/spack-src/src/a3m_compress.h:41:27: error: 'uint32_t' has not been declared 305 41 | void readU32(char**ptr, uint32_t &result); 306 | ^~~~~~~~ ```
2024-02-05ecp-data-vis-sdk: remove self-referential dependencies (#42484)Massimiliano Culpo1-1/+1
This shouldn't be an issue, but express this limitation with a conflict.
2024-02-05motioncor2: add v1.6.4 (#42380)George Young1-8/+17
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2024-02-05kentutils: update to @459, update download location & deps (#42448)George Young1-15/+22
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk> Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-02-05py-pytest: add v8.0.0 (#42344)Adam J. Stewart2-4/+10
2024-02-05cgal: add v5.3.2 (#42378)Tom Payerle1-0/+1
2024-02-05star: updating to 2.7.11a (#42011)George Young1-1/+8
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk> Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-02-05kripke: add adiak dependency with Caliper enabled (#42414)David Boehme1-0/+1
2024-02-05starpu: add release 1.4.4 (#42446)Nathalie Furmento1-0/+1
2024-02-05py-lightly: fix conflict definition (#42449)Adam J. Stewart1-2/+1
2024-02-05hiop: require RAJA when cuda is enabled (#42407)Cameron Rutherford1-0/+3
2024-02-05sentieon-genomics: add new version 202308.02 (#42465)snehring1-0/+1
2024-02-05mpfr: add v4.2.1 (#42479)Olivier Cessenat1-0/+3
2024-02-05py-lightning: add v2.1.4 (#42468)Adam J. Stewart1-0/+1
2024-02-05stripack: sets the licence SPDX (#42473)Olivier Cessenat1-0/+5
2024-02-05visit-ffp and visit-unv: sets the licence SPDX (#42474)Olivier Cessenat2-0/+4
2024-02-05ngspice: new version 42 (#42475)Olivier Cessenat1-0/+3
2024-02-05latex2html: new version 2024 (#42476)Olivier Cessenat1-1/+6
2024-02-05nlopt: new version 2.7.1 (#42477)Olivier Cessenat1-0/+3
2024-02-05gtkplus: add v3.24.41 and fix CUPS problems (#42480)Michael Kuhn1-5/+9
Fixes #42297
2024-02-05asio: remove self-referential dependencies (#42469)Massimiliano Culpo1-4/+2
These shouldn't be an issue, but they can be expressed in terms of variants on the package.
2024-02-05converge: fix self-referential dependencies (#42471)Massimiliano Culpo1-11/+3
2024-02-05scr: fix @develop dependency versions (#42379)Elsa Gonsiorowski, PhD1-8/+8
2024-02-05cp2k: fix self-referential dependencies (#42472)Massimiliano Culpo1-8/+7
2024-02-05berkeleygw: fix self-referential dependencies (#42470)Massimiliano Culpo1-4/+2
Also, remove a couple of duplicate directives
2024-02-04py-pymummer: init (#42412)David Guibert1-0/+29
* py-pymummer: init * Update py-pymummer copyright date Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com> --------- Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-02-04py-ete3: adding version 3.1.3 (#42462)snehring1-0/+1
2024-02-04ldsc: new package @2.0.1 (#42430)George Young1-0/+26
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2024-02-04py-pyfastaq: init (#42413)David Guibert1-0/+26
2024-02-04sicer2: new Python package @1.0.3 (#42383)George Young1-0/+21
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2024-02-04fix ipyrad numpy dependencies (#42098)Mike Renfro1-1/+7
* fix ipyrad numpy depedencies ipyrad versions through 0.9.90 use np.int, which is deprecated in numpy 1.20. * fix whitespace * Correct numpy dependency restrictions
2024-02-03flecsi: fix constraints on mpi providers (#42447)Massimiliano Culpo1-3/+3
2024-02-03quantum-espresso: fix self-referential dependencies (#42458)Massimiliano Culpo1-7/+7
2024-02-03py-alphafold: use permanent link for openmm patch (#42461)Mosè Giordano1-1/+1
2024-02-03Environment views: dependents before dependencies, resolve identical file ↵Harmen Stoppels12-40/+224
conflicts (#42350) Fix two separate problems: 1. We want to always visit parents before children while creating views (when it comes to ignoring conflicts, the first instance generated in the view is chosen, and we want the parent instance to have precedence). Our preorder traversal does not guarantee that, but our topological- order traversal does. 2. For copy style views with packages x depending on y, where <x-prefix>/foo is a symlink to <y-prefix>/foo, we want to guarantee that: * A conflict is not registered * <y-prefix>/foo is chosen (otherwise, the "foo" symlink would become self-referential if relocated relative to the view root) Note that * This is an exception to [1] (in this case the dependency instance overrides the dependent) * Prior to this change, if "foo" was ignored as a conflict, it was possible to create this self-referential symlink Add tests for each of these cases