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2018-02-13R package: add version v3.2.5 (#7139)peetsv1-1/+2
2018-02-13r-rcppblaze: new package (#7209)Yifan Zhu2-1/+68
2018-02-13Fix for building METIS 4.0.3 with '~shared'. (#7202)Veselin Dobrev1-3/+5
2018-02-13Added Nox for Trilinos installation by xSDK (#7219)Keita Teranishi1-1/+1
* Added Nox for Trilinos installation by xSDK * Enable NOX only for Develop copy
2018-02-13Changed keyword argument 'recurse' to 'recursive'alalazo17-19/+21
2018-02-13find has been changed to accept glob expressionsalalazo8-61/+80
Following the discussion with Todd and Adam, find has been modified to accept glob expressions. This should not affect performance as every glob implementation I inspected has 3 cases (no wildcard, wildcard but no directories involved, wildcard and directories involved) and uses fnmatch underneath. Mixins have been changed to do by default a non-recursive search (but a recursive search can still be triggered using the recursive keyword).
2018-02-13filter_compiler_path: added the possibility to narrow search pathalalazo6-15/+45
Following a comment from Todd, the search path for the files listed in `filter_compiler_wrappers` can now be narrowed. Anyhow, the function implementation still makes use of `find`, the rationale being that we have already seen packages that install artifacts in e.g. architecture dependent folders. The possibility to have a relative search path might be a good compromise between the previous approach and the one suggested in the review. Also: 'ignore_absent' and 'backup' keyword arguments can be optionally forwarded to `filter_file`.
2018-02-13mixins: moved debug logs to 'filter_file'. Renamed shadowed variable name.alalazo2-11/+16
Following comments from Todd: - the call to tty.debug has been moved deeper, to log the filtering of each file - the shadowing on the name "kwargs" is avoided
2018-02-13mvapich2: ported 2e6a735b0043bebe8c6ff88f21c1bb2de0063135alalazo1-1/+1
2018-02-13mixins: flush method dictionaries after registration.alalazo1-0/+6
2018-02-13mixins: implemented declarative syntaxalalazo9-115/+174
Implemented a declarative syntax for the additional behavior that can get attached to classes. Implemented a function to filter compiler wrappers that uses the mechanism above.
2018-02-13Improved naming of properties and classes (per Denis comments).alalazo7-19/+21
2018-02-13Added mixins to modularize common behaviors across build-systems.alalazo8-119/+144
Modifications: * added a mixin to filter compiler wrappers from files * modified hdf5, openmpi, mpich, mvapich2 to use it
2018-02-13FFTW: expose optimization handles via variants (SIMD + FMA) (#7038)Massimiliano Culpo1-6/+20
2018-02-12Rework command reference in docs, add `spack commands` commandTodd Gamblin7-20/+459
- command reference now includes usage for all Spack commands as output by `spack help`. Each command usage links to any related section in the docs. - added `spack commands` command which can list command names, subcommands, and generate RST docs for commands. - added `llnl.util.argparsewriter`, which analyzes an argparse parser and calls hooks for description, usage, options, and subcommands
2018-02-12Fix issues with `spack [cmd] -h` help outputTodd Gamblin2-13/+40
- Shorten Spack command usage for short options. Short options are now shown as [-abc] instead of as [-a] [-b] [-c] - fix bug that mixed long and short options for top-level `spack help`
2018-02-12Fix section labels for some commands in the docsTodd Gamblin2-7/+7
2018-02-12make defaults in command help look like standard argparseTodd Gamblin5-7/+7
2018-02-12Add help for buildcache, reorganize command help categoriesTodd Gamblin5-10/+15
- Add proper help for `spack buildcache` subcommands - Reorganize the help categories of Spack commands so that buildcache is in packaging and diy and setup are now in build.
2018-02-12Clean up help metavar for --scope configuration optionsTodd Gamblin6-14/+32
- previously commands with this argument showed a long list of choices that were platform specific. - use a better metavar: {defaults,system,site,user}[/PLATFORM]
2018-02-12new package: Glfmultiples (#7055)Levi Baber1-0/+49
2018-02-12grackle package: add float option (#7196)Loikki1-0/+4
2018-02-12fluxbox lightweight window manager (#7169)Luigi Calori1-0/+46
2018-02-12RAJA package: add versions and CUDA/openmp support (#7201)David Beckingsale1-1/+29
2018-02-12updates to conduit and ascent packages (#7040)Cyrus Harrison2-10/+18
* Remove variants disabling blas and lapack for py-numpy, issues building these have been resolved * For CMake greater than 3.10, FindMPI changed, so use MPIEXE_EXECUTABLE instead of MPIEXE for 3.10 and newer
2018-02-12Use python3.6 to test building docs (#7218)Massimiliano Culpo1-1/+1
I think the main issue here is that we ship a custom version of a system library (`argparse`), and this is prone to fail if `argparse` is imported before we hack `sys.path` internally. Probably a better solution would be not to customize argparse, but instead have a wrapper on top of whatever the system provides.
2018-02-11Set a default python that is consistent with the libraries in PYTHONHOME (#7157)Massimiliano Culpo1-0/+5
fixes #7128 Before this PR packages that were indirectly dependent on python might have failed due to inconsistency between the python found in the environment and the standard libraries set in PYTHONHOME
2018-02-11shortbred: Create new package (#7210)Eric1-0/+51
2018-02-11glimmer: Create new package (#7208)Eric1-0/+43
2018-02-11xtensor-python (#7217)Axel Huebl1-0/+56
pybind11 bindings for seamlessly using xtensor in python
2018-02-11pybind11: 2.2.[1,2] & develop (#7216)Axel Huebl1-0/+4
Add the latest release of `pybind11` and its `develop` version.
2018-02-11Xtensor 0.15.1 (#7215)Axel Huebl3-4/+8
Add the latest xtensor release and its dependencies.
2018-02-09new package: diffsplice (#7187)Eric1-0/+41
2018-02-09hpgmg package: add debug option and new version (#7175)Jed Brown1-3/+13
This adds a static version of hpgmg (up to now only the latest commit from the master branch was available). This also adds a debug variant and sets optimization flags for ~debug when the compiler is gcc, intel, or clang
2018-02-09petsc: use spack-built python for configure (#7176)Jed Brown1-1/+1
Make sure to use Spack-built python to run petsc configure script (in particular since petsc requires python@2.6:2.8)
2018-02-09xbraid@2.2.0: new package (#7205)Geoffrey Oxberry1-0/+68
2018-02-09git-imerge@1.1.0: new package (#7203)Geoffrey Oxberry1-0/+62
2018-02-09py-checkm-genome: Create new package (#7200)Eric1-0/+43
2018-02-09fix petsc int64 metis dependencies (#7195)David Gardner1-4/+7
2018-02-09libSplash: 1.7.0 (#7199)Axel Huebl1-2/+18
Adds the latest release of libSplash (1.7.0) and newly learned CMake flags for explicit dependency control. Modifies HDF5 dependency: non-MPI splash does (and did) never run with a parallel HDF5, due to it's internal cross-dependencies on MPI.
2018-02-08comd: more sane default (#7046)Christoph Junghans1-1/+1
Avoid useless deps.
2018-02-07Change location of public key in basic tutorial (#7192)v0.11.2becker331-5/+5
* Change location of public key in basic tutorial * Change tuturial version number to 11.2
2018-02-06LIBXSMM 1.8.3 (#7183)Hans Pabst1-1/+2
2018-02-06samblaster: Create new package (#7188)Eric1-0/+40
2018-02-06py-localcider: Create new package (#7189)Eric1-0/+39
2018-02-06oclint: new package (#7076)Geoffrey Oxberry2-0/+99
2018-02-05angsd: new version, and conflict for newer htslib with old version (#7122)Levi Baber1-0/+2
2018-02-04Update fish url for fish 2.7.1 (#7089)Mark Meredith1-1/+2
2018-02-03Update Nek5000 package to Version 17 (#7178)Thilina Rathnayake1-14/+12
and minor polishing
2018-02-03highfive: Update to version 1.5 (#7041)Erik Schnetter1-0/+1
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