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* Coastal codes installation
* Finished debugging swan.
* Fix formatting errors identified by flake8
* Another attempt to fix formatting.
* Fixed year in header.
* Fixed maintainers syntax and other details from review comments.
* Remove redundant url.
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Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
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* py-pysam: adding version 0.21.0
* Update var/spack/repos/builtin/packages/py-pysam/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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Add a section to the lock file to track the Spack version/commit that produced
an environment. This should (eventually) enhance reproducibility, though we
do not currently do anything with the information. It just adds to provenance
at the moment.
Changes include:
- [x] adding the version/commit to `spack.lock`
- [x] refactor `spack.main.get_version()
- [x] fix a couple of environment lock file-related typos
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Co-authored-by: Matt Lieber <lieber.31@osu.edu>
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fixes #29464
This PR allows to use
```
$ spack concretize -j X
```
to set a cap on the parallelism of concretization from the command line
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Turn off ARM NEON support on MacOS arm64
Co-authored-by: Stephen Herbener <stephen.herbener@gmail.com>
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(#37379)
* add openmp_max_threads variant and enable avx 512 optimizations for icelake and cascadelake
Signed-off-by: Andrey Parfenov <andrey.parfenov@intel.com>
* revert manual enabling of avx512 for icelake and cascadelake
Signed-off-by: Andrey Parfenov <andrey.parfenov@intel.com>
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Signed-off-by: Andrey Parfenov <andrey.parfenov@intel.com>
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* add a virtual dependency name instead of complete package name
* add OneAPI components as providers of virtual packages
* Revert the default of tbb
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Co-authored-by: Nisarg Patel <nisarg.patel@lrz.de>
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fixes #30355
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fixes #21242
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Flags are encoded differently from other variants, and they need a choice rule to
ensure clingo has a choice to impose (or not) a constraint.
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* add petsc 3.19 for exago@develop
* simplify version syntax
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The flags --mirror-name / --mirror-url / --directory were deprecated in
favor of just passing a positional name, url or directory, and letting spack
figure it out.
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Co-authored-by: Scott Wittenburg <scott.wittenburg@kitware.com>
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Prior to this PR, the HOMEDRIVE environment variable was used to
detect what drive we are operating in. This variable is not available
for service account logins (like what is used for CI), so switch to
extracting the drive from PROGRAMFILES (which is more-widely defined).
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On Windows, several commonly available system tools for decompression
are unreliable (gz/bz2/xz). This commit refactors `decompressor_for`
to call out to a Windows or Unix-specific method:
* The decompressor_for_nix method behaves the same as before and
generally treats the Python/system support options for decompression
as interchangeable (although avoids using Python's built-in tar
support since that has had issues with permissions).
* The decompressor_for_win method can only use Python support for
gz/bz2/xz, although for a tar.gz it does use system support for
untar (after the decompression step). .zip uses the system tar
utility, and .Z depends on external support (i.e. that the user
has installed 7zip).
A naming scheme has been introduced for the various _decompression
methods:
* _system_gunzip means to use a system tool (and fail if it's not
available)
* _py_gunzip means to use Python's built-in support for decompressing
.gzip files (and fail if it's not available)
* _gunzip is a method that can do either
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* py-gtdbtk: adding version 2.3.0
* py-gtdbtk: adding missing pydantic dep
* py-gtdbtk: restrict pydantic dep
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* ophidia-io-server: new package at v1.7
* ophidia-io-server: Fix package
* ophidia-analytics-framework: new package at v1.7
* Fix code style in ophidia-analytics-framework
* Merge
* ophidia-analytics-framework: update package to v1.7.3
* Update package.py
* Fix style
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Co-authored-by: SoniaScard <SoniaScard@users.noreply.github.com>
Co-authored-by: Donatello Elia <eldoo@users.noreply.github.com>
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* fix(hdf5): h5pfc link failure
develop branch doesn't need linking any more.
See: https://github.com/HDFGroup/hdf5/commit/acb186f6e5f0ac3e5bfb9501e3381c1968489a59
* [@spackbot] updating style on behalf of hyoklee
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Co-authored-by: hyoklee <hyoklee@users.noreply.github.com>
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(#34236)
This is a refactor of Spack's stand-alone test process to be more spack- and pytest-like.
It is more spack-like in that test parts are no longer "hidden" in a package's run_test()
method and pytest-like in that any package method whose name starts test_
(i.e., a "test" method) is a test part. We also support the ability to embed test parts in a
test method when that makes sense.
Test methods are now implicit test parts. The docstring is the purpose for the test part.
The name of the method is the name of the test part. The working directory is the active
spec's test stage directory. You can embed test parts using the test_part context manager.
Functionality added by this commit:
* Adds support for multiple test_* stand-alone package test methods, each of which is
an implicit test_part for execution and reporting purposes;
* Deprecates package use of run_test();
* Exposes some functionality from run_test() as optional helper methods;
* Adds a SkipTest exception that can be used to flag stand-alone tests as being skipped;
* Updates the packaging guide section on stand-alone tests to provide more examples;
* Restores the ability to run tests "inherited" from provided virtual packages;
* Prints the test log path (like we currently do for build log paths);
* Times and reports the post-install process (since it can include post-install tests);
* Corrects context-related error message to distinguish test recipes from build recipes.
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* py-datalad: add 0.18.3
* [@spackbot] updating style on behalf of manuelakuhn
* Remove metadata variant
* Fix dependencies
* Remove redundant version restriction
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* py-loguru: add v0.2.5
* py-loguru: add v0.3.0
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* hip: get_paths for hipify-clang
* fix: need to actually use get_paths now to get hipify-clang path
* set hipify-clang path differentluy for external vs spack-installed case
* [@spackbot] updating style on behalf of eugeneswalker
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fixes #22341
Using double quotes creates issues with shell variable substitutions,
in particular when the manifest has "definitions:" in it. Use single
quotes instead.
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