| Age | Commit message (Collapse) | Author | Files | Lines |
|---|
|
|
|
spack mirror create cannot work with urls, so it shouldn't promote local
paths to file urls.
|
|
|
|
* py-itk: add version 5.3.0
* Remove wheels for unsupported python versions
* Fill out the version specs
* Drop th 'm' from the cp37 version strings
|
|
-Wno-error=incompatible-function-pointer-types,pointer-types-discards-qualifiers (#34984)
|
|
* py-sphinx-immaterial: new package
This is a new-ish theme for Sphinx that's based on MkDocs's `immaterial` theme. More on
the theme here: https://jbms.github.io/sphinx-immaterial/, but it seems to be very clear
and readable. We *might* consider switching to it for Spack's docs.
* Update var/spack/repos/builtin/packages/py-sphinx-immaterial/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/py-sphinx-immaterial/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/py-sphinx-immaterial/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/py-sphinx-immaterial/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* add note about node.js requirements
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
|
|
|
|
* CDashReporter: remove unused argument
* Removed extract_ctest_test_data
|
|
* Forward lookup of "test_log_file" and "test_failures"
refers #34531
closes #34487
fixes #34440
* Add unit test
* py-libensemble: fix tests
* Support stand-alone tests with cached files as install-time tests
Co-authored-by: Tamara Dahlgren <dahlgren1@llnl.gov>
|
|
|
|
|
|
* gnupg: 2.4.0
* libksba: 1.6.3 (CVE-2022-47629)
|
|
Ensure `spack mirror add <name> <url/path>` without further arguments translates to `<name>: <url>` key value pairs in mirrors.yaml. If --s3-* flags are provided, only store the provided ones.
Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl>
|
|
This is only a work-around for the actual problem that Python is used to install libraries instead of CMake, so we end up with BUILD_RPATH not INSTALL_RPATHs.
Signed-off-by: Loïc Pottier <pottier1@llnl.gov>
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
|
|
|
|
|
|
|
|
* Add new file for MVAPICH 3.0a release
Creating this as a new package since it requires some new configuration
options and because we are moving to the name "MVAPICH" and droping the
2 (following a similar move by MPICH).
Co-authored-by: Nat Shineman <shineman.5@osu.edu>
Co-authored-by: Matthew Lieber <lieber.31@osu.edu>
|
|
|
|
Co-authored-by: openCARP consortium <info@opencarp.org>
|
|
Add one more note on the $env variable in `config.yaml`.
|
|
Bumps [actions/checkout](https://github.com/actions/checkout) from 3.2.0 to 3.3.0.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](https://github.com/actions/checkout/compare/755da8c3cf115ac066823e79a1e1788f8940201b...ac593985615ec2ede58e132d2e21d2b1cbd6127c)
---
updated-dependencies:
- dependency-name: actions/checkout
dependency-type: direct:production
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
|
|
|
|
Update crtm from JCSDA-EMC spack fork, add crtm-fix
|
|
Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 3.2.0 to 3.3.0.
- [Release notes](https://github.com/docker/build-push-action/releases)
- [Commits](https://github.com/docker/build-push-action/compare/c56af957549030174b10d6867f20e78cfd7debc5...37abcedcc1da61a57767b7588cb9d03eb57e28b3)
---
updated-dependencies:
- dependency-name: docker/build-push-action
dependency-type: direct:production
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
|
|
|
|
* OpenCV: checksum for 4.5.5, make contrib optional
* [@spackbot] updating style on behalf of iarspider
* Add conflicts for contrib modules
* Fix typo
* Implement changes from review
* Update var/spack/repos/builtin/packages/opencv/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: iarspider <iarspider@users.noreply.github.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
|
|
There are some declarations that need to be declared noexcept for
valarray. This affects gcc 9.5:11.2.
|
|
* Revert "Revert "4th chunk of nf-core deps from update/nextflow-tools (#34564)" (#34960)"
This reverts commit 891a63cae616dbc92acdad0e0eb626edbd0862a0.
* fix to py-python-multipart, as per PR review
|
|
* py-macs2: add version 2.2.7.1 and support python@3.10:
The tarball from PyPi includes the Cythonized C files. The tarball from
github does not. Remove the Cythonized C files from the source so that
they are rebuilt with the Spack Python/Cython combination. This is
necessary for python-3.10 but make sense for other combinations as well.
* Edits based on review
- set python version constraint on version 2.2.4
- removed all python-2 versions and related constraints.
|
|
* py-xxhash: fix xxhash dependency
The dependency should be xxhash@0.8.0:.
* Add version 3.2.0
|
|
Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
|
|
* Add depends_on("mpi") to fix missing <mpi.h>
Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
|
|
- add python dependency
- add perl dependency
- set python and perl interpreters in scripts
|
|
|
|
- stringtie uses internal samtools so remove dependency on samtools
- add dependency for zlib
- use make release target to get correct flags
|
|
|
|
|
|
|
|
* Add package file for xtb and py-xtb
* Retain maintainers from PythonPackage
* Update package files
- use extends("python") instead of tampering with PYTHONPATH
- use PyPI for downloading sdist of py-xtb
- add simple-dftd3 0.7.0
- add dftd4 3.5.0
- remove --wrap-mode=nodownload from toml-f
* Remove logic for download URL
|
|
With this change we get the invariant that `mirror.fetch_url` and
`mirror.push_url` return valid URLs, even when the backing config
file is actually using (relative) paths with potentially `$spack` and
`$env` like variables.
Secondly it avoids expanding mirror path / URLs too early,
so if I say `spack mirror add name ./path`, it stays `./path` in my
config. When it's retrieved through MirrorCollection() we
exand it to say `file://<env dir>/path` if `./path` was set in an
environment scope.
Thirdly, the interface is simplified for the relevant buildcache
commands, so it's more like `git push`:
```
spack buildcache create [mirror] [specs...]
```
`mirror` is either a mirror name, a path, or a URL.
Resolving the relevant mirror goes as follows:
- If it contains either / or \ it is used as an anonymous mirror with
path or url.
- Otherwise, it's interpreted as a named mirror, which must exist.
This helps to guard against typos, e.g. typing `my-mirror` when there
is no such named mirror now errors with:
```
$ spack -e . buildcache create my-mirror
==> Error: no mirror named "my-mirror". Did you mean ./my-mirror?
```
instead of creating a directory in the current working directory. I
think this is reasonable, as the alternative (requiring that a local dir
exists) feels a bit pendantic in the general case -- spack is happy to
create the build cache dir when needed, saving a `mkdir`.
The old (now deprecated) format will still be available in Spack 0.20,
but is scheduled to be removed in 0.21:
```
spack buildcache create (--directory | --mirror-url | --mirror-name) [specs...]
```
This PR also touches `tmp_scope` in tests, because it didn't really
work for me, since spack fixes the possible --scope values once and
for all across tests, so tests failed when run out of order.
|
|
|
|
|
|
This reverts commit 4e63d92bc927aeb5380bdc48500abda4cda4b5bd.
|
|
|
|
Packages that use docbook-xml may specify a specific entity version.
When this is specified as a version constraint in the package recipe it
will cause problems when using `unify = True` in a Spack environment, as
there could be multiple versions of docbook-xml in the spec. In
practice, any entity version should work with any other version and
everything should work with the latest version. This PR maps all Spack
docbook-xml entity versions to the docbook-xml version in the spec.
Ideally, the version in the spec would be the latest version. With this
PR, even if a package specifies an older entity version, it will map
to the entity version (latest) in the spec. This means that there can be one
docbook-xml version in a Spack environment spec and packages requesting
older entity versions will still work.
To help facilitate this, docbook-xml version constraints for packages
that have them have been removed. Those packages are dbus and gtk-doc.
|
|
|
|
Since legit regular expressions are matched, do not pass string=True
to the filter
Refs #34897
|
|
A few new versions of harbuzz, but just jumping to the last non-6 version as preferred.
No build system changes:
- within 5 series: https://github.com/harfbuzz/harfbuzz/compare/5.1.0...5.3.1
- from 5 to 6: https://github.com/harfbuzz/harfbuzz/compare/5.3.1...6.0.0
The 5 series fixes a build issue for aarch64, https://github.com/harfbuzz/harfbuzz/issues/3768.
|
|
|
