Age | Commit message (Collapse) | Author | Files | Lines |
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* Add checksum for py-oauthlib 3.2.1
* Update package.py
* [@spackbot] updating style on behalf of iarspider
* Update package.py
* Update package.py
Co-authored-by: iarspider <iarspider@users.noreply.github.com>
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* commit updating py-libensemble package for 0.9.3
* removed commented-out lines
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* petsc,py-petsc4py,slepc,py-slepc4py: add version 3.18.0
* workaround for dealii build failure [with petsc version check]
* pism: add compatibility fix to for petsc@3.18
* add in hipsolver dependency
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* hip-set-prefix-rocm5.2.0-onwards
* Update var/spack/repos/builtin/packages/hip/package.py
Update description
Co-authored-by: Satish Balay <balay@mcs.anl.gov>
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* gasnet: Add new release hash
* upcxx: Add new release hash
* gasnet: misc updates
* upcxx: misc updates
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* Add checksum for py-gitpython 3.1.27
* Update package.py
* Update var/spack/repos/builtin/packages/py-gitpython/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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When a pipeline generation job is automatically failed because it
generated jobs for specs known to be broken on develop, print better
information about the broken specs that were encountered. Include
at a minimum the hash and the url of the job whose failure caused it
to be put on the broken specs list in the first place.
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* py-execnet: 1.9.0
* bounds
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* libcroco does not respect gtk-doc configure flag, so removing variant
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* new package + deps
* Update var/spack/repos/builtin/packages/py-about-time/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/py-alive-progress/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* removed unnecessary python version dep
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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* add new lua releases
* split install phase and move it into a build phase, remove hardcoded standard flag
* revert back to the original hardcoded std flag, guard patch against versions above 5.4
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* Remove ROCm constraints for ginkgo@glu_experimental.
* Fix style.
* Apply @tcojean suggestion.
* Fix hip_repair_options in camp package.
* Remvoe old ROCm logic.
* Remove added whitespace.
* Fix style issue.
* Revert camp changes.
* Revert camp whitespace change.
* Set Ginkgo preferred version to 1.4.0
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* py-pyopenssl: add version 22.1.0
* Update var/spack/repos/builtin/packages/py-pyopenssl/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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* Add checksum for py-bokeh 2.4.3
* [@spackbot] updating style on behalf of iarspider
Co-authored-by: iarspider <iarspider@users.noreply.github.com>
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* Add checksum for py-keyring 23.9.1
* Update package.py
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* Add checksum for py-setuptools-rust 1.5.1
* Update package.py
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* Add checksum for py-jupyter-server-mathjax 0.2.6
* Update package.py
* Update package.py
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* Add checksum for py-regex 2022.8.17
* Update var/spack/repos/builtin/packages/py-regex/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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* Add checksum for py-async-lru 1.0.3
* [@spackbot] updating style on behalf of iarspider
* Update var/spack/repos/builtin/packages/py-async-lru/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update package.py
Co-authored-by: iarspider <iarspider@users.noreply.github.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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Bumps [docker/login-action](https://github.com/docker/login-action) from 2.0.0 to 2.1.0.
- [Release notes](https://github.com/docker/login-action/releases)
- [Commits](https://github.com/docker/login-action/compare/49ed152c8eca782a232dede0303416e8f356c37b...f4ef78c080cd8ba55a85445d5b36e214a81df20a)
---
updated-dependencies:
- dependency-name: docker/login-action
dependency-type: direct:production
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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Bumps [docker/setup-buildx-action](https://github.com/docker/setup-buildx-action) from 2.0.0 to 2.1.0.
- [Release notes](https://github.com/docker/setup-buildx-action/releases)
- [Commits](https://github.com/docker/setup-buildx-action/compare/dc7b9719a96d48369863986a06765841d7ea23f6...95cb08cb2672c73d4ffd2f422e6d11953d2a9c70)
---
updated-dependencies:
- dependency-name: docker/setup-buildx-action
dependency-type: direct:production
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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* add fortran variant, pass cmake options to build with fortran + specified compiler/mpi compiler wrapper (following existing style in the package), activate exodus fortran wrapper library compilation
* change variant description, fix style
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* gpi-space: add new version
* gpi-space: fix flake8 formatting issues
* gpi-space: fix more flake8 issues
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* env depfile: allow deps only install
- Refactor `spack env depfile` to use a Jinja template, making it a bit
easier to follow as a human being.
- Add a layer of indirection in the generated Makefile through an
`<prefix>/.install-deps/<hash>` target, which allows one to specify
different options when installing dependencies. For example, only
verbose/debug mode on when installing some particular spec:
```
$ spack -e my_env env depfile -o Makefile --make-target-prefix example
$ make example/.install-deps/<hash> -j16
$ make example/.install/<hash> SPACK="spack -d" SPACK_INSTALL_FLAGS=--verbose -j16
```
This could be used to speed up `spack ci rebuild`:
- Parallel install of dependencies from buildcache
- Better readability of logs, e.g. reducing verbosity when installing
dependencies, and splitting logs into deps.log and current_spec.log
* Silence please!
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* Add bioc attribute to r-do-db
* add version 1.38.1 to bioconductor package r-annotationforge
* add version 1.30.4 to bioconductor package r-biocparallel
* add version 2.64.1 to bioconductor package r-biostrings
* add version 4.4.4 to bioconductor package r-clusterprofiler
* add version 2.12.1 to bioconductor package r-complexheatmap
* add version 1.18.1 to bioconductor package r-delayedmatrixstats
* add version 3.22.1 to bioconductor package r-dose
* add version 3.38.4 to bioconductor package r-edger
* add version 1.16.2 to bioconductor package r-enrichplot
* add version 2.20.2 to bioconductor package r-ensembldb
* add version 1.32.4 to bioconductor package r-genomeinfodb
* add version 1.32.1 to bioconductor package r-genomicalignments
* add version 1.48.4 to bioconductor package r-genomicfeatures
* add version 1.44.1 to bioconductor package r-ggbio
* add version 3.4.4 to bioconductor package r-ggtree
* add version 1.24.2 to bioconductor package r-hdf5array
* add version 2.30.1 to bioconductor package r-iranges
* add version 1.36.3 to bioconductor package r-keggrest
* add version 3.52.4 to bioconductor package r-limma
* add version 1.8.1 to bioconductor package r-matrixgenerics
* update r-org-hs-eg-db
* add version 1.38.1 to bioconductor package r-organismdbi
* add version 1.36.1 to bioconductor package r-pathview
* add version 1.56.1 to bioconductor package r-rtracklayer
* add version 1.4.1 to bioconductor package r-scaledmatrix
* add version 1.24.1 to bioconductor package r-scran
* add version 1.6.3 to bioconductor package r-scuttle
* add version 1.18.1 to bioconductor package r-singlecellexperiment
* add version 1.20.2 to bioconductor package r-treeio
* Revert "Add bioc attribute to r-do-db"
This reverts commit 36be5c6072c98ec70bb16f9d613a6fe24407fee1.
* Fix quotes on versions
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
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* Added deps for slate+rocm smoke test
* Style change
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For older versions of intel-oneapi-compilers, running the compiler in
preprocessor / compilation mode would trigger warnings that
`-Wl,-rpath,...` flags were unused.
This in turn caused certain configure scripts to fail as they did not
expect output from the compiler (it's treated as an error). Notably
cmake's bootstrap phase failed to detect c++ features of the compiler.
As a workaround, add this flag to silence the warning, since I don't
think we can scope the flags to compile+link mode.
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