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2023-04-17netcdf-c: major refactoring, new variants and versions (#36485)Sergey Kosukhin4-232/+310
2023-04-17CI: update Linux images in ML pipelines (#36766)Adam J. Stewart5-12/+23
Add missing openssl/curl/pkgconfig deps to py-tokenizers Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2023-04-17r-rstantools: add v2.3.1 (#36890)Alec Scott1-0/+1
2023-04-17r-r-utils: add v2.12.2 (#36884)Alec Scott1-0/+1
2023-04-17move depfile logic into its own module, separate traversal logic from model ↵Harmen Stoppels2-147/+264
(#36911)
2023-04-17cgl: add v0.60.7 (#36940)Alec Scott1-0/+1
2023-04-17masurca: add v4.1.0 (#36942)Alec Scott1-0/+1
2023-04-17spot: add v2.11.4 (#36943)Alec Scott1-0/+1
2023-04-17glab: add v1.28.0 (#36946)Alec Scott1-0/+3
2023-04-17plumed: add 2.8.2, 2.7.6 and their supported gromacs combinations (#36929)Carlos Bederián2-28/+36
* plumed: Add 2.8.2, 2.7.6 * gromacs: add plumed 2.8.2 and 2.7.6 support
2023-04-17slang: add v2.3.3 (#36952)Alec Scott1-0/+1
2023-04-17transdecoder: add v5.7.0 (#36953)Alec Scott1-0/+1
2023-04-17Add "build" stage to many Go packages (#36795)Alec Scott6-6/+45
2023-04-17py-lightly: py-torch+distributed required (#36955)Adam J. Stewart1-1/+9
2023-04-17py-sphinx: add new versions (#36938)Adam J. Stewart1-0/+6
2023-04-17ruby-rake: add v13.0.6 (#36945)Alec Scott1-0/+1
2023-04-17hepmc3: add v3.2.6 (#36941)Alec Scott1-0/+1
2023-04-17Add umpire support to SIRIUS (#36958)Taillefumier Mathieu1-0/+7
2023-04-17Add dependency changes to R packages (#36937)Glenn Johnson9-11/+22
This PR adds dependency changes that were missed with some recent merges of R package updates.
2023-04-16rust: depend on curl+nghttp2 (#36947)Harmen Stoppels1-0/+3
2023-04-16apptainer: new versions 1.1.6, 1.1.7 (#36838)Wouter Deconinck1-2/+3
* apptainer: new versions 1.0.6, 1.0.7 No changes to build system required. https://github.com/apptainer/apptainer/compare/v1.1.5...v1.1.7 * apptainer: rm hanging chad
2023-04-16Change extend to append (#36939)Juan Miguel Carceller1-1/+1
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2023-04-16libmypaint: change extend to append (#36957)Wouter Deconinck1-1/+2
* libmypaint: change extend to append For same reason as #36939, `extend` takes a list as argument, while `append` takes list entry. Here `append` should be used. * libmypaint: depends_on intltool
2023-04-15r-jsonlite: add v1.8.4 (#36872)Alec Scott1-0/+1
2023-04-15r-progressr: add v0.13.0 (#36881)Alec Scott1-0/+1
2023-04-15r-hoardr: add v0.5.3 (#36869)Alec Scott1-0/+1
2023-04-15r-sn: add v2.1.1 (#36891)Alec Scott1-0/+1
2023-04-15r-rstan: add v2.21.8 (#36889)Alec Scott1-0/+1
2023-04-15r-timedate: add v4022.108 (#36897)Alec Scott1-0/+1
2023-04-15libctl: add v4.5.1 (#36852)Alec Scott1-0/+1
2023-04-15r-yulab-utils: add v0.0.6 (#36900)Alec Scott1-0/+1
2023-04-15r-spades-tools: add v1.0.1 (#36892)Alec Scott1-0/+1
2023-04-15r-svglite: add v2.1.1 (#36893)Alec Scott1-0/+1
2023-04-15r-taxizedb: add v0.3.1 (#36894)Alec Scott1-0/+1
2023-04-15r-tibble: add v3.2.1 (#36895)Alec Scott1-0/+1
2023-04-15r-tidytree: add v0.4.2 (#36896)Alec Scott1-0/+1
2023-04-15sdl2: add v2.26.5 (#36901)Alec Scott1-0/+1
2023-04-15r-utf8: add v1.2.3 (#36898)Alec Scott1-0/+1
2023-04-15r-xts: add v0.13.0 (#36899)Alec Scott1-0/+1
2023-04-15r-dendextend: add v1.17.1 (#36861)Alec Scott1-0/+1
2023-04-15r-curl: add v5.0.0 (#36860)Alec Scott1-0/+1
2023-04-15r-earth: add v5.3.2 (#36863)Alec Scott1-0/+1
2023-04-15OpenMPI: tell it where libcuda.so is (#36784)Howard Pritchard1-0/+5
starting with the 5.0.x release stream the cuda related configury items in Open MPI once again need --with-cuda-libdir so that libcuda.so can be found at configure time, otherwise no cuda support unless someone copies libcuda.so to $CUDA_HOME/lib64 related to #36760 Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2023-04-15openblas: add -Wno-error=implicit-function-declaration for Arm compiler (#36821)Annop Wongwathanarat1-1/+1
2023-04-15netlib-scalapack: add -Wno-error=implicit-function-declaration for Arm ↵Annop Wongwathanarat1-1/+6
compiler (#36822)
2023-04-15scorpio: add -Wno-error=implicit-function-declaration for Arm compiler (#36827)Annop Wongwathanarat1-1/+1
2023-04-15libffi: add -Wno-error=implicit-function-declaration for Arm compiler (#36832)Annop Wongwathanarat1-1/+1
2023-04-15gingko: remove redundant build type variant (#36703)Jon Rood1-6/+0
2023-04-15superlu-dist: add -Wno-error=implicit-function-declaration for Arm compiler ↵Annop Wongwathanarat1-3/+3
(#36831)
2023-04-15build(deps): bump actions/checkout from 3.5.1 to 3.5.2 (#36848)dependabot[bot]7-26/+26
Bumps [actions/checkout](https://github.com/actions/checkout) from 3.5.1 to 3.5.2. - [Release notes](https://github.com/actions/checkout/releases) - [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md) - [Commits](https://github.com/actions/checkout/compare/83b7061638ee4956cf7545a6f7efe594e5ad0247...8e5e7e5ab8b370d6c329ec480221332ada57f0ab) --- updated-dependencies: - dependency-name: actions/checkout dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>