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2017-01-18jemalloc: Update to 4.4.0 (#2850)Erik Schnetter1-0/+1
2017-01-17Allow spack create to detect packages that need to run autoreconf (#2848)Adam J. Stewart1-15/+47
2017-01-17oce: add 0.18 and fix patching (#2844)Denis Davydov2-40/+10
* oce: add 0.18 and fix patching * oce: simplify the patch
2017-01-17check if node is already deleted (#2799)Jason Sarich1-2/+3
* check if node is already deleted * fix variable name
2017-01-17p4est: switch to AutotoolsPackage (#2839)Denis Davydov1-10/+3
2017-01-17Support scionlib version detection (#2818)Adam J. Stewart2-0/+8
2017-01-16Bump version to 0.10.0Todd Gamblin1-1/+1
2017-01-16Add release branches to travis testing.Todd Gamblin1-0/+1
2017-01-16Add PythonPackage base classAdam J. Stewart169-1011/+849
- Add a PythonPackage class with build system support. - Support build phases in PythonPackage - Add a custom sanity check for PythonPackages - Get rid of nolink dependencies in python packages - Update spack create to use new PythonPackage class - Port most of Python packages to new PythonPackage class - Conducted a massive install and activate of Python packages. - Fixed bugs introduced by install and activate. - Update API docs on PythonPackage
2017-01-16Major improvements to spack create (#2707)Adam J. Stewart7-449/+526
* Initial changes to spack create command * Get 'spack create <url>' working again * Simplify call to BuildSystemGuesser * More verbose output of spack create * Remove duplicated code from spack create and spack checksum * Add better documentation to spack create docstrings * Fix pluralization bug * Flake8 * Update documentation on spack create and deprecate spack edit --force * Make it more obvious when we are renaming a package * Further deprecate spack edit --force * Fix unit tests * Rename default template to generic template * Don't add automake/autoconf deps to Autotools packages * Remove changes to default $EDITOR * Completely remove all traces of spack edit --force * Remove grammar changes to make the PR easier to review
2017-01-16Set MPI environment variables to the compiler wrappers on Cray (#2762)Mario Melara1-7/+12
* Set MPI[lang] env var to compiler wrappers on cray Sets MPICC, MPICXX, MPIFC etc to point to the compiler wrappers on Cray systems. Some packages look for MPIs via environment variables - e.g adios * Use spec to check for Cray * os is no longer used.
2017-01-16Don't duplicate spack test in spack help (#2837)Adam J. Stewart1-3/+2
2017-01-16Add lmod support for `spack module loads` (#2758)George Hartzell1-0/+1
The `spack module loads` command only supported tcl and dotkit. This adds support for lmod.
2017-01-16Specify Python location in VisIt in a more uniform fashion. (#2803)Jon Rood1-2/+1
2017-01-16Fix issue with Mac OS version detection in m4 package. (#2835)Todd Gamblin1-3/+3
2017-01-16petsc: add 64bit variant (#2655)Denis Davydov6-23/+44
* petsc: add 64bit variant * hypre: add int64 variant * superlu-dist: add int64 variant * petsc: add int64 variant * metis: rename idx64 to int64 to make it consistent with other packages * mumps: rename idx64 to int64 to make it consistent with other packages * dealii: rename 64bit to int64 to make it consistent with other packages
2017-01-16isl: add latest version (#2834)Axel Huebl1-0/+1
added latest version of isl. Needed to get llvm/clang in the latest trunk to build via spack, but there are more versions available. what is the policy regarding those? Add what we need for now?
2017-01-15Parser fix (#2769)becker339-109/+246
* Fixed parser to eliminate need for escape quotes. TODO: Fix double call to shlex, fix spaces in spec __str__ * Fixed double shlex * cleanup * rebased on develop * Fixed parsing for multiple specs; broken since #360 * Revoked elimination of the `-` sigil in the syntax, and added it back into tests * flake8 * more flake8 * Cleaned up dead code and added comments to parsing code * bugfix for spaces in arguments; new bug found in testing * Added unit tests for kv pairs in parsing/lexing * Even more flake8 * ... yet another flake8 * Allow multiple specs in install * unfathomable levels of flake8 * Updated documentation to match parser fix
2017-01-15Updating BoxLib with the ability to build again. (#2813)Jon Rood1-16/+18
* Updating BoxLib with the ability to build again. * Using Spack MPI compilers directly. * Fixing typo. * Using tarball from github archive for boxlib.
2017-01-15Add Astra package (#2800)Adam J. Stewart1-0/+41
2017-01-15Added customization for make targets in 'build' and 'install' phases for ↵Adam J. Stewart8-78/+96
CMakePackage (#2742) * Added customization for make targets in 'build' and 'install' phases for CMakePackage * Use rst in build system docs so that Sphinx generates nice API docs * Allow AutotoolsPackages to be built in a different directory * Flake8 * Fix missing import * Allow configure to be located in different directory * Update espressopp to use build targets * Flake8 * Sphinx fix, lists must be a new paragraph * Back out change that allowed a configure script in a different directory than build_directory * Add missing deps, build in parallel * Missing space for rst list
2017-01-15New package: CppAD (#2832)Jean-Paul Pelteret1-0/+48
2017-01-15Remove cmake build dep from CMakePackages (#2684)Adam J. Stewart10-18/+1
2017-01-15Add list_url to cmake (#2714)Adam J. Stewart1-2/+4
2017-01-15Clang & Boost: No PCH (#2827)Axel Huebl1-0/+7
Although it hurts a little, officially pre-compiled headers in boost are only supported for gcc & msvc and the latest clang releases still fail to build boost with it. Therefore, I disabled building those to get boost build with clang 3.9.0 on an Ubuntu 14.04 (x86). Links to documentation and boost bug reports are inline, so people can later on check if they still apply. Seems just to be a bug in `Boost.Build` that tries to set `-o` with multiple output files.
2017-01-15Add a test to exercise non-buildable external packages. (#2833)Todd Gamblin1-2/+30
2017-01-15Fixed find -lp command (coloring was broken) (#2820)becker331-3/+2
2017-01-15Packages: Add CUDA8 (#2823)Axel Huebl1-0/+2
Adds the latest CUDA release, 8.0.44.
2017-01-15Add old version of PGI (#2784)Adam J. Stewart1-1/+5
2017-01-15Add latest version of PETSc (#2783)Adam J. Stewart1-0/+1
2017-01-15get_std_cmake_args delegates to CMakePackage._std_args fixes #2665 (#2805)Massimiliano Culpo3-16/+57
2017-01-15Features/octopus 6.0 (#2819)danielsjensen11-8/+53
* Added support for Octopus 6.0 and the optional libraries: metis, parmetis, netcdf, arpack-ng, and scalapack. * Fix PEP 8 line too long error. * Changed format syntax {} to {0} to support Python 2.6.
2017-01-15added psutil python package (#2812)Gregory Lee1-0/+43
2017-01-15Adding the py-ipdb package for more stable debugging with iPython. (#2824)Stephen McDowell1-0/+58
* Adding the py-ipdb package for more stable debugging with iPython. * Removing deprecated python support, adding missing dependencies. * Adding version checks for (i)python
2017-01-15Add the package py-sphinx-bootstrap-theme (#2825)Matthew Scott Krafczyk1-0/+41
2017-01-13boost: fixing boost-1.55.0 for gcc-5 (#2822)Andrey Prokopenko2-0/+54
boost-1.55.0 requires patching when compiling with gcc-5. See these threads: https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=197594 https://svn.boost.org/trac/boost/ticket/10125 Fixes #2821.
2017-01-12configure and build command: fix the stop iteration semanticsMassimiliano Culpo1-0/+5
- broke somewhere between bdf48322696290d4e3d00ed12b7c7fe6ca213478 (#2810) and 17b13b161b3ddcd691ea7ed90165cfab6dec3950
2017-01-11mirror: fix error for some specs during concretization (#2806)Massimiliano Culpo1-0/+3
2017-01-10Update the boost versions used by openspeedshop. Boost-1.60 to current ↵Jim Galarowicz6-16/+16
latest causes compile errors when building openspeedshop. (#2300) * Update the krell institute products to use the latest features of spack for building on cluster platforms. * Address travis error messages and resubmit the pull request. * Update the contents of openspeedshop package.py so it passes the flake8 tests. * Fix flake8 error-whitespack issue in mrnet package.py file. * Add updates based on spack reviewer feedback. * More fixes based on comments from reviewers. Switch using extend to using append, remove additional setting of PATH and LD_LIBRARY_PATH that should not be required due to RPATH. * More review related changes. Update MPIOption.append lines and take out xercesc references. * Create a base options function for common openspeedshop base cmake options to reduce redundencies. * Add libxml2+python depends on to get around issues with the libxml2 package file. * Using boost over 1.60.0 causes compile errors. This is a known boost bug. Also, dyninst-9.2.0 is set to be the vesrion of dyninst to use with OSS, as of now. The newer version fails to build. * Fix bad syntax in specifying the boost version range. * Update the version numbers for the krell institute components and tools: cbtf and openspeedshop. * Do not build glib for qt3, it is not needed and causes build problems at this time anyway.
2017-01-10Change nargs='*' to argparse.REMAINDER for constraint options. (#2798)Todd Gamblin2-2/+3
2017-01-10openjpeg: fixes url (#2790)Massimiliano Culpo1-0/+4
2017-01-09Temporary workaround for R concretization bug (#2756)Adam J. Stewart1-2/+1
2017-01-09Added list_url to r-dt package (#1533)sknigh1-0/+1
2017-01-07Get Rid of nobuild, nolink, and alldeps (#2765)Elizabeth Fischer184-515/+508
* Removing the nobuild, nolink, and alldeps dependency types in favor of being explicit. * This will help with maintenance going forward, as adding more dependency types won't affect existing declared dependencies in weird ways. * default deptype is still `('build', 'link')`
2017-01-07Various updates to the NCO package and dependencies (#2639)Adam J. Stewart9-100/+45
* Remove +mpi variant from NCO * Update NCO deps to AutotoolsPackage * Update the other NetCDF packages to AutotoolsPackage * ANTLR has a nolink deptype on java, don't worry about csharp * Remove restrictions from NCO package, fix homepage * Add version 4.6.3 of NCO * Missed AutotoolsPackage for NetCDF-CXX4 * NetCDF tests fail when run in parallel * Remove commented out dependency * Add documentation dependency
2017-01-07Unset PETSC_DIR during installation (#2768)Adam J. Stewart1-1/+11
* Set PETSC_DIR during installation * Move env var unsets to setup_environment * Fix unset var name and number of args
2017-01-07Added needed deps for bbcp (#2773)James Wynne III1-0/+3
2017-01-07Preliminary RPackage class (#2761)Adam J. Stewart173-1213/+238
2017-01-07Fix issues linking hDF5 1.8.14 and below on Ubuntu. (#2772)Todd Gamblin1-1/+15
2017-01-06add conduit 0.2.1 release (#2766)Cyrus Harrison1-1/+2
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