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2020-03-20spack checksum: Use package's fetch_options (#15481)Michael Kuhn2-3/+12
This makes sure that a package's fetch_options are used when fetching new versions to checksum. This allows working around problems with slow servers or those requiring a cookie to be set.
2020-03-20Cray bugfix: TERM missing while reading default target (#15381)Greg Becker1-6/+8
Bug: Spack hangs on some Cray machines Reason: The TERM environment variable is necessary to run bash -lc "echo $CRAY_CPU_TARGET", but we run that command within env -i, which wipes the environment. Fix: Manually forward the TERM environment variable to env -i /bin/bash -lc "echo $CRAY_CPU_TARGET"
2020-03-20Upstreams: don't write metadata directory to upstream DB (#15526)Kai Germaschewski1-1/+1
When trying to use an upstream Spack repository, as of f2aca86 Spack was attempting to write to the upstream DB based on a new metadata directory added in that commit. Upstream DBs are read-only, so this should not occur. This adds a check to prevent Spack from writing to the upstream DB
2020-03-20Creating versions from urls doesn't modify class attributes (#15452)Massimiliano Culpo3-3/+3
fixes #15449 Before this PR a call to pkg.url_for_version was modifying class attributes determining different results for subsequents calls and an error when the urls was empty.
2020-03-20bugfix: fix install_missing_compilers option bug from v0.14.0 (#15416)Greg Becker1-0/+18
* bugfix: ensure bootstrapped compilers built before packages using the compiler
2020-03-20bugfix: installer.py shouldn't be executable (#15386)Todd Gamblin1-0/+0
This is a minor permission fix on the new installer.py introduced in #13100.
2020-03-20tau: add dependency on hwloc (#15589)eugeneswalker1-0/+1
2020-03-20Add function replace_prefix_nullterm for use on mach-o rpaths. (#15347)Patrick Gartung1-3/+34
This recovers the old behavior of replace_prefix_bin that was modified to work with elf binaries by prefixing os.sep to new prefix until length is the same as old prefix.
2020-03-20ArchSpec: fix semantics of satisfies when not concrete and strict is true ↵Massimiliano Culpo2-0/+17
(#15319)
2020-03-20suite-sparse: fix installation for v5.X (#15326)Adam J. Stewart1-1/+2
fixes #15184 GraphBLAS depends on m4 according to CMake error message Do not use INSTALL= when compiling the library
2020-03-20testing: increase installer coverage (#15237)Tamara Dahlgren3-109/+280
2020-03-20bugfix: resolve undefined source_pkg_dir failure (#15339)Tamara Dahlgren2-8/+74
2020-03-20sentencepiece: add new package (#15596)Adam J. Stewart1-0/+20
2020-03-20Bugfix: resolve StopIteration message attribute failure (#15341)Massimiliano Culpo2-1/+22
Testing the install StopIteration exception resulted in an attribute error: AttributeError: 'StopIteration' object has no attribute 'message' This PR adds a unit test and resolves that error.
2020-03-20Recover coverage from subprocesses during unit tests (#15354)Tamara Dahlgren5-16/+16
* Recover coverage from subprocesses during unit tests
2020-03-20Correct pytest.raises matches to match (#15346)Massimiliano Culpo3-10/+10
2020-03-20bugfix: Add dependents when initializing spec from yaml (#15220)Tamara Dahlgren2-11/+17
The new build process, introduced in #13100 , relies on a spec's dependents in addition to their dependencies. Loading a spec from a yaml file was not initializing the dependents. - [x] populate dependents when loading from yaml
2020-03-20Uniquify suffixes added to module names (#14920)Seth R. Johnson3-1/+4
2020-03-20bugfix: ensure proper dependency handling for package-only installs (#15197)Tamara Dahlgren3-17/+149
The distributed build PR (#13100) -- did not check the install status of dependencies when using the `--only package` option so would refuse to install a package with the claim that it had uninstalled dependencies whether that was the case or not. - [x] add install status checks for the `--only package` case. - [x] add initial set of tests
2020-03-20Fix for being able to 'spack load' packages that have been renamed. (#14348)Andrew W Elble2-1/+36
* Fix for being able to 'spack load' packages that have been renamed. * tests: add test for 'spack load' of a installed, but renamed/deleted package
2020-03-20modules: store configure args during build (#11084)Michael Kuhn4-11/+41
This change stores packages' configure arguments during build and makes use of them while refreshing module files. This fixes problems such as in #10716.
2020-03-20fetch_strategy: remove vestigial code (#15431)Greg Becker1-18/+0
2020-03-20py-dgl: add new package (#15594)Adam J. Stewart1-0/+94
2020-03-20Add NLopt version 2.6.1 (#15595)Benjamin Fovet1-0/+1
2020-03-20papi: add version 6.0.0 (#15590)Kevin Manalo1-0/+1
2020-03-20root: Add version 6.20.{00,02} (#15487)Dr. Christian Tacke1-4/+17
* Add version 6.20.{00,02}, don't yet mark it preferred * It needs zstd * It needs numpy (at least for 6.20.00:6.20.03) * Reorder python dependencies a bit * Add mlp variant, default False Older versions always include mlp, so no conflicts there. * Disable tmva, because it needs mlp * tmva needs mlp, so add conflict
2020-03-20Show the packaga name for a missing patch sha256 (#15441)Dr. Christian Tacke1-1/+2
When a patches sha256 is missing, also show the packagename, so that analyzing is easier.
2020-03-20Added two new versions of spdlog (#15586)Matthieu Dorier1-0/+2
2020-03-20add new package: glusterfs (#15565)darmac1-0/+44
* add new package: glusterfs * fix list_depth for url * remove list_depth * add list_url for glusterfs
2020-03-20add new package lksctp-tools (#15564)darmac1-0/+20
Co-Authored-By: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2020-03-20py-decorator: added v4.4.2 (#15581)Adam J. Stewart1-1/+2
2020-03-20py-networkx: add 2.4 (#15582)Adam J. Stewart1-7/+20
2020-03-20py-tfdlpack: add new package (#15583)Adam J. Stewart1-0/+45
2020-03-20acts-core: added v0.18, updated boost dependency (#15584)Hadrien G1-1/+3
2020-03-20htop: add missing python build dependency (#15585)Andreas Baumbach1-0/+1
2020-03-20perfstubs: added new package (#15547)Kevin Huck1-0/+34
2020-03-19Improvements to Rust's Installation (#15395)Andrew Gaspar2-46/+513
* Add sources and resources for each version of Rust * install bootstrapping compiler into stage * Add libgit2 * Install bootstrapping compiler correctly * implement full rust bootstrap * Remove support for Rust pre-1.14 Also add lots of comments * Support only Rust 1.17 and newer * Remove < 1.23 versions of Rust * Change the layout of rust_releases for maintainability * Remove LLVM variant * Address flake8 issues * Make libgit2 curl variant default False, conflict 0.28 and newer * Remove binutils dependency * Add ARM64 while we're at it * flake8 * use the 'python' routine rather than relying on the correct python to be picked up
2020-03-19add new package: bcache (#15563)darmac2-0/+49
* add new package: bcache * add depends: gettext for libintl
2020-03-19add new package: libiscsi (#15579)darmac1-0/+28
2020-03-19Update MVAPICH2 package for 2.3.3 release (#15578)Nithin Senthil Kumar1-1/+2
Co-authored-by: senthilkumar.16 <senthilkumar.16@nowlab.cse.ohio-state.edu>
2020-03-19Cray bugfix: TERM missing while reading default target (#15381)Greg Becker1-6/+8
Bug: Spack hangs on some Cray machines Reason: The TERM environment variable is necessary to run bash -lc "echo $CRAY_CPU_TARGET", but we run that command within env -i, which wipes the environment. Fix: Manually forward the TERM environment variable to env -i /bin/bash -lc "echo $CRAY_CPU_TARGET"
2020-03-19cosma: added package at v2.0.2 (#15497)Teodor Nikolov1-0/+69
* [new package] COSMA * Use virtual dependencies
2020-03-19add charliecloud/0.14; remove umoci/skopeo; remove builder variant (#15573)Jordan Ogas1-13/+14
* add charliecloud/0.14; remove umoci/skopeo; remove builder variant * fix typo * add maintainer; add explicit config doc options; add py-requests as run dependency * add autoconf build dependencies
2020-03-19petsc fix hdf5 (#15572)Kai Germaschewski1-1/+2
* petsc: add checksum for 3.12.4 * petsc: constrain hdf5 to <= 1.10.x Current petsc will error when being build with hdf5 1.12, so this ensures that a compatible hdf5 will be used. Fix suggested by @balay.
2020-03-19add new package: ntirpc (#15561)darmac1-0/+22
2020-03-19add new package: yarn (#15562)darmac1-0/+22
2020-03-19Add package: py-deprecated (#15571)Yannik Stradmann1-0/+20
https://github.com/tantale/deprecated
2020-03-19refactor: `spack.package.possible_dependencies()` handles virtualsTodd Gamblin4-44/+75
- [x] move some logic for handling virtual packages from the `spack dependencies` command into `spack.package.possible_dependencies()` - [x] rework possible dependencies tests so that expected and actual output are on the left/right respectively
2020-03-19bugfix: `spack.package.possible_dependencies()` should return virtualsTodd Gamblin1-7/+1
`spack.package.possible_dependencies()` was forgetting to pass the `visited` dict to recursive calls; this fixes it
2020-03-19openssl: added v1.1.1e and v1.0.2u (#15568)Michael Kuhn1-0/+2
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