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* openradioss-starter,engine: new package
* openradioss-engine: change version name develop to main
* openradioss-starter: change version name develop to main
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* Add Binder spackage
* Format binder recipe
* Format binder recipe
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* add buiconductor-ebseq
Signed-off-by: Pablo <pablo.aledo@seqera.io>
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Signed-off-by: Pablo <pablo.aledo@seqera.io>
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Prevent the code from crashing (cf. https://grigoriefflab.umassmed.edu/comment/1696#comment-1696).
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* lastz: add v1.04.22
* Fix formatting of versions to include extra space
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Add version 2023.06.07, update python to 3.7.
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Darshan Runtime does not properly link symols for HDF5 when using shared
libraries.
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* perl-devel-size: adding new package
* repeatmodeler: adding new version 2.0.4
* perl-devel-size: adding proper description
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Update Tcl modulefile template to use the `depends-on` command to
autoload modules if Lmod is the current module tool.
Autoloading modules with `module load` command in Tcl modulefile does
not work well for Lmod at some extend. An attempt to unload then load
designated module is performed each time such command is encountered. It
may lead to a load storm that may not end correctly with large number of
module dependencies.
`depends-on` command should be used for Lmod instead of `module load`,
as it checks if module is already loaded, and does not attempt to reload
this module.
Lua modulefile template already uses `depends_on` command to autoload
dependencies. Thus it is already considered that to use Lmod with Spack,
it must support `depends_on` command (version 7.6+).
Environment Modules copes well with `module load` command to autoload
dependencies (version 3.2+). `depends-on` command is supported starting
version 5.1 (as an alias of `prereq-all` command) which was relased last
year.
This change introduces a test to determine if current module tool that
evaluates modulefile is Lmod. If so, autoload dependencies are defined
with `depends-on` command. Otherwise `module load` command is used.
Test is based on `LMOD_VERSION_MAJOR` environment variable, which is set
by Lmod starting version 5.1.
Fixes #36764
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Bumps [python-levenshtein](https://github.com/maxbachmann/python-Levenshtein) from 0.21.0 to 0.21.1.
- [Release notes](https://github.com/maxbachmann/python-Levenshtein/releases)
- [Changelog](https://github.com/maxbachmann/python-Levenshtein/blob/main/HISTORY.md)
- [Commits](https://github.com/maxbachmann/python-Levenshtein/compare/v0.21.0...v0.21.1)
---
updated-dependencies:
- dependency-name: python-levenshtein
dependency-type: direct:production
update-type: version-update:semver-patch
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 4.1.0 to 4.1.1.
- [Release notes](https://github.com/docker/build-push-action/releases)
- [Commits](https://github.com/docker/build-push-action/compare/44ea916f6c540f9302d50c2b1e5a8dc071f15cdf...2eb1c1961a95fc15694676618e422e8ba1d63825)
---
updated-dependencies:
- dependency-name: docker/build-push-action
dependency-type: direct:production
update-type: version-update:semver-patch
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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Bumps [docker/setup-buildx-action](https://github.com/docker/setup-buildx-action) from 2.6.0 to 2.7.0.
- [Release notes](https://github.com/docker/setup-buildx-action/releases)
- [Commits](https://github.com/docker/setup-buildx-action/compare/6a58db7e0d21ca03e6c44877909e80e45217eed2...ecf95283f03858871ff00b787d79c419715afc34)
---
updated-dependencies:
- dependency-name: docker/setup-buildx-action
dependency-type: direct:production
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
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When interpreting local paths as relative URL endpoints, they were
formatted as Windows paths on Windows (i.e. with '\'). URLs should
always be POSIX-style.
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Update modulefile templates to append a trailing delimiter to MANPATH
environment variable, if the modulefile sets it.
With a trailing delimiter at ends of MANPATH's value, man will search
the system man pages after searching the specific paths set.
Using append-path/append_path to add this element, the module tool
ensures it is appended only once. When modulefile is unloaded, the
number of append attempt is decreased, thus the trailing delimiter is
removed only if this number equals 0.
Disclaimer: no path element should be appended to MANPATH by generated
modulefiles. It should always be prepended to ensure this variable's
value ends with the trailing delimiter.
Fixes #11355.
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* opencascade: new variants
OpenCascade has several major modules and not every
application needs all of them. This adds variants for
the various modules.
It also uodatws the 3rdparty dependency treatment.
* [@spackbot] updating style on behalf of wdconinc
* Update var/spack/repos/builtin/packages/opencascade/package.py
* opencascade: remove variant foundation_classes (always true)
* [@spackbot] updating style on behalf of wdconinc
* Update var/spack/repos/builtin/packages/opencascade/package.py
---------
Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
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* fix Boost dependency
* fix testing and move psm2/sockets as unsupported
* fix style to separate maintainers/tags/version
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Co-authored-by: Matthew Lieber <lieber.31@osu.edu>
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doing our external surgery on things that inherited pythonextension (#38186)
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* Deprecate R packages for spatial analysis
* [@spackbot] updating style on behalf of adamjstewart
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Co-authored-by: adamjstewart <adamjstewart@users.noreply.github.com>
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