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adds a new release of isaac.
(1.3.0 forgot to bump the internal version number
in include macros)
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* butter: new package
* butter: fixed dependency type
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(#4675)
* Fix for building osu-micro-benchmarks on OS X (librt not available/required)
* Fixed typo and replaced extend by append
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* ampliconnoise: new package
* ampliconnoise: fixed installation
* ampliconnoise: fixing install again
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* libint: factored parts of configure_args into their own functions
* libint: added -xSSE2, as suggested by @lee218llnl
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* Dataspaces spack package, hard-wired for ubuntu VM
* Initial commit of dataspaces spack package
* Made changes and additions necessary to install on Cori and Titan
* Added temp 1.6.2.1 for testing
* Updated tar file for 1.6.2
* Fixed formatting
* Set the type of build dependencies
* Changed the way autogen.sh is called for compatibility
* Use append instead of extend to add configure flags
* Various syntax fixes
* Switched string checking to method for compatibility
Now using the six library for Python 3 compatibility. Thanks @adamjstewart
* Made MPI variant default
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- Lock test can be run either as a node-local test or as an MPI test.
- Lock test is now parametrized by filesystem, so you can test the
locking capabilities of your NFS, Lustre, or GPFS filesystem. See docs
for details.
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- Uses O_CREAT for touch (for guaranteed atomic open on NFS, multi-node)
- Ignore concurrent create errors in mkdirp
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- renamed develop version from 'plus' to 'develop'
- patches now prefixed by corresponding OpenFOAM version number.
This makes it easier to sort and see what old/junk exists.
- remove MPI_BUFFER_SIZEk env variable (for all openfoam variants).
The OpenFOAM shell setup addresses this and there is no reason
to pollute the module environment at this stage.
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* sabre initial commit, works but test does not
* removing test until I have time to fix it
* sabre: fixing flake8 errors
* sabre: changing to MakefilePackage
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See - https://github.com/Microsoft/CNTK/issues/62
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Commit-type: bug-fix, portability-fix
Funded-by: IDEAS
Project: xSDK
Time: .4 hours
Reported-by: Stanislav Y Sergienko <ssergien@anl.gov>
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The tarball used until now is not available anymore.
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* go-bootstrap: Update to 1.4-bootstrap-20170531
Clean up empty patch method.
* go: Update to 1.8.3
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5.9.0 fails to build with disabled OpenGL.
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* mpifileutils: update to v0.7
* mpifileutils: disable --enable-experimental in v0.6 and earlier
* mpifileutils: list newest version first, avoid experimental switch unless at v0.7 or later
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* Update hdfgroup packages to new URL structure
* Update docs now that HDF5 URL isn't that complicated
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Make it possible to pass addition arguments to the
JVM.
Apparently there are two vars and they are [commonly *both* used][1].
Go figure.
[1]: https://stackoverflow.com/questions/23507639/is-it-same-mean-java-args-and-java-opts
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* albacore 1.24 requires numpy 1.13 - added numpy 1.13
* added numpy 1.13
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* Add package for lftp
* Avoid expensive list processing
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* allpathslg: adding package. compiler specs iffy, will fix
* allpaths-lg: adding new package
* allpaths-lg: fixing conflicts
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* * add mpii* wrappers for use with intel compilers
* in mumps package, scotch is compiled without metis option when
ptscotch variant is selected. This removes confusion over which
metis.h to use
* for intel mkl, add SPACK_COMPILER_EXTRA_RPATHS ending in 'intel64'
* scotch lib requires libz when compression is turned on. This
caused a link issue on some Ubuntu distributions (not
redhat). Change Scotch package to add -lz when needed
* * intel-mkl append to SPACK_COMPILER_EXTRA_RPATHS rather than setting
* use more concise method to obtain libz libraries for scotch
* remove changes to intel mpi
* remove commented out depends_on
* fix flake8 errors
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* Add package for primer3
Built and mildly tested on CentOS 7.
* Convert to MakefilePackage
I always forget about this...
* Set build_directory the easy way
Life's not always complicated. Don't go out of my way
to make it so....
* Fix Flake8 issue
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* Add package for muscle
Minimally tested on CentOS7.
* Convert to MakefilePackage
Do it the easy way...
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Minimally tested on CentOS 7.
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* pegtl: version bump
* pegtl: added 2.1.4
* pegtl: reorder versions
* pegtl: fix flake8
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* Return an error exit code if spack cd does not succeed.
* Reducing amount of return statements in spack cd exit code.
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* added perl-star-fusion and perl-intervaltree
* added perl-star-fusion and all dependencies
* changes
* made changes as requested to perl-star-fusion dependencies
* changed perl-intervaltree dependency
* changes to star fusion
* now using perl properly
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* Added magma package
* Incorporated Serban's change
* fix-xl/trilinos: add -qfixed to Fortran flags in seacas package
* fix-xl/trilinos: fixed spack flake8 errors
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- Thanks to pointer from @adamjstewart - can avoid this either by
avoiding an external mxml dependency, or by making certain that they
both use consistent code generation.
The adios package uses '-fPIC' for python linkage and this seems to
require the same for mxml too. If the adios-internal version of mxml
is used, it has the same flags for both.
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* added py-multiqc and dependencies
* added requested changes per #4381
* added colormath dependency per https://github.com/jsvine/spectra/blob/master/requirements.txt
* py-multiqc changes
* py-multiqc does not need colormath - spectra does
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