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- [x] Add `mkdir -p` and `chmod` to ensure `/home/spack-test` exists and
has correct permissions.
- [x] Remove version comments from dependabot-managed action commits
- [x] Don't duplicate comment describing required fixes for distros with
patched git
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Fedora updated git, so we need to apply, again, the
workaround for CVE-2022-24765
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Ubuntu patched git v2.25.1 with a security fix that also
introduced a breaking change, so v2.25.1 behaves like
v2.35.2 with respect to the use cases in CVE-2022-24765
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The status displayed in the terminal title could be wrong when doing
distributed builds. For instance, doing `spack install glib` in two
different terminals could lead to the current package being reported as
`40/29` due to the way Spack handles retrying locks.
Work around this by keeping track of the package IDs that were already
encountered to avoid counting packages twice.
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Known issues reports only 2 issues, among the bugs reported on GitHub.
One of the two is also outdated, since the issue has been solved
with the new concretizer. Thus, this commit removes the section.
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Currently `old_root` is computed by reading the symlink at `self.root`.
We should be more defensive in removing it by checking that it is in the
same directory as the new root. Otherwise, in the worst case, when
someone runs `spack env create --with-view=./view -d .` and `view`
already exists and is a symlink to `/`, Spack effectively runs `rm -rf /`.
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* stacks: add regression tests for matrix expansion
* Use constrain semantics to construct spec lists for stacks
* Fix semantics for constraining an anonymous spec. Add tests
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spack (#29518)
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`stat`'ing a file in the dst dir is the wrong thing to do, you should
`lstat` to capture broken symlinks.
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A few calls use `deptypes=...` instead of `deptype=...`
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* Fix reindex with uninstalled deps
When a prefix of a dep is removed, and the db is reindexed, it is added
through the dependent, but until now it incorrectly listed the spec as
'installed'.
There was also some questionable behavior in the db when the same spec
was added multiple times, it would always be marked installed.
* Always reserve path
* Only add installed spec's prefixes to install prefixes set
* Improve warning, and ensure ensure only ensures
* test: reindex with every file system remnant removed except for the old index; it should give a database with nothing installed, including records with installed==False,external==False,ref_count==0,explicit=True, and these should be removable from the database
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The option `spack -C` was broken if another flag that touched config was
also set (`spack -C ... -d`, `-c config:...` etc...).
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This avoids dangling symlink errors. ignore_dangling_symlinks option would be more-targeted but is only available for Python >= 3.2 (#28318)
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* locks: allow locks to work under high contention
This is a bug found by Harshitha Menon.
The `lock=None` line shouldn't be a release but should be
```
return (lock_type, None)
```
to inform the caller it couldn't get the lock type requested without
disturbing the existing lock object in the database. There were also a
couple of bugs due to taking write locks at the beginning without any
checking or release, and not releasing read locks before requeueing.
This version no longer gives me read upgrade to write errors, even
running 200 instances on one box.
* Change lock in check_deps_status to read, release if not installed,
not sure why this was ever write, but read definitely is more
appropriate here, and the read lock is only held out of the scope if
the package is installed.
* Release read lock before requeueing to reduce chance of livelock, the
timeout that caused the original issue now happens in roughly 3 of 200
workers instead of 199 on average.
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With this commit:
```
$ spack env activate --temp
$ spack install zlib
==> All of the packages are already installed
==> Updating view at /tmp/spack-faiirgmt/.spack-env/view
$ spack install zlib
==> All of the packages are already installed
```
Before this PR:
```
$ spack env activate --temp
$ spack install zlib
==> All of the packages are already installed
$ spack install zlib
==> All of the packages are already installed
```
No view was generated
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* py-vermin: add latest version 1.3.2
* [vermin] Fixed usages of super() without arguments (v3+)
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Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
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This commit introduces the command
spack module tcl setdefault <package>
similar to the one already available for lmod
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
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This reverts commit c5ca0db27fce5d772dc8a4fcffec3b62bb0bf1f3.
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otherwise spack breaks using system man pages by default.
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
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Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
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* Provide a meaningful failure message for installation of an empty environment
* Allow regenerating view per offline discussion
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performance (#27970)
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
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* upcxx: Update the UPC++ package to 2021.9.0
* Add the new release, and a missing older one.
* Remove the spack package cruft for supporting the obsolete build system that
was present in older versions that are no longer supported.
* General cleanups.
Support for library versions older than 2020.3.0 is officially retired,
for two reasons:
1. Releases prior to 2020.3.0 had a required dependency on Python 2,
which is [officially EOL](https://www.python.org/doc/sunset-python-2/)
as of Jan 1 2020, and is no longer considered secure.
2. (Most importantly) The UPC++ development team is unable/unwilling to
support releases more than two years old. UPC++ provides robust
backwards-compatibility to earlier releases of UPC++ v1.0, with very
rare well-documented/well-motivated exceptions. Users are strongly
encouraged to update to a current version of UPC++.
NOTE: Most of the lines changed in this commit are simply re-indentation,
and thus might be best reviewed in a diff that ignores whitespace.
* upcxx: Detect Cray XC more explicitly
This change is necessary to prevent false matches occuring on new Cray Shasta
systems, which do not use the aries network but were incorrectly being treated
as a Cray XC + aries platform.
UPC++ has not yet deployed official native support for Cray Shasta, but this
change is sufficient to allow building the portable backends there.
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This broke in #24858
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Fix builds which produce a lines with non-UTF8 output while logging
The alternative is to read in binary mode, and then decode while
ignoring errors.
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