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2022-12-22sherpa: add v2.2.13 (#34628)Wouter Deconinck1-0/+1
2022-12-22ML CI: Linux x86_64 (#34299)Adam J. Stewart4-256/+283
* ML CI: Linux x86_64 * Update comments * Rename again * Rename comments * Update to match other arches * No compiler * Compiler was wrong anyway * Faster TF
2022-12-22added py-dynim package (#34651)Loïc Pottier1-0/+26
Signed-off-by: Loïc Pottier <48072795+lpottier@users.noreply.github.com> Signed-off-by: Loïc Pottier <48072795+lpottier@users.noreply.github.com>
2022-12-22Restrict a patch of rhash to versions >=1.3.6 (#34310)Andrew Wood1-1/+1
2022-12-22Fix combine_phase_logs text encoding issues (#34657)Harmen Stoppels2-5/+20
Avoid text decoding and encoding when combining log files, instead combine in binary mode. Also do a buffered copy which is sometimes faster for large log files.
2022-12-22neve: add new package (#34596)Wladimir Arturo Garces Carrillo1-0/+43
Co-authored-by: WladIMirG <WladIMirG@users.noreply.github.com>
2022-12-22Add `--fresh` to docs to actually upgrade spack environments (#34433)Alec Scott1-5/+40
2022-12-22docs: show module documentation before submodules (#34258)Todd Gamblin1-0/+1
Currently, the Spack docs show documentation for submodules *before* documentation for submodules on package doc pages. This means that if you put docs in `__init__.py` in some package, the docs in there will be shown *after* the docs for all submodules of the package instead of at the top as an intro to the package. See, e.g., [the lockfile docs](https://spack.readthedocs.io/en/latest/spack.environment.html#module-spack.environment), which should be at the [top of that page](https://spack.readthedocs.io/en/latest/spack.environment.html). - [x] add the `--module-first` option to sphinx so that it generates module docs at top of page.
2022-12-22docs: remove monitors and analyzers (#34358)Todd Gamblin3-434/+0
These experimental features were removed in #31130, but the docs were not. - [x] remove the `spack monitor` and `spack analyze` docs
2022-12-22librsvg: add 2.40.21, which does not require rust (#34585)Benjamin S. Kirk1-2/+15
* librsvg: add 2.40.21, which does not require rust and has some security backports https://download.gnome.org/sources/librsvg/2.40/librsvg-2.40.21.news * librsvg: prevent finding broken gtkdoc binaries when ~doc is selected. On my CentOS7 hosts, ./configure finds e.g. /bin/gtkdoc-rebase even when ~doc is selected. These tools use Python2, and fail with an error: "ImportError: No module named site" So prevent ./configure from finding these broken tools when not building the +doc variant.
2022-12-22openbabel: add 3.1.0 and 3.1.1 (#34631)Rocco Meli1-0/+4
2022-12-22reframe: rework recipe, add v4.0.0-dev4 (#34584)Vasileios Karakasis1-11/+19
2022-12-22quantum-espresso: enable linking with armpl-gcc and acfl for BLAS and FFT ↵Annop Wongwathanarat1-0/+9
(#34416)
2022-12-22index.json.hash, no fatal error if key cannot be fetched (#34643)Harmen Stoppels2-19/+20
2022-12-22kokkos: add v3.7.01 (#34645)Benjamin Fovet1-1/+2
Co-authored-by: Benjamin Fovet <benjamin.fovet@cea.fr>
2022-12-22py-pytorch-lightning: add v1.8.6 (#34647)Adam J. Stewart1-0/+1
2022-12-22perl-config-simple: add 4.58 (#34649)Christopher Christofi1-0/+15
2022-12-22Using corresponding commit ids of hiprand for each releases (#34545)renjithravindrankannath1-2/+28
2022-12-22bacio: patch for v2.4.1 (#34575)Alex Richert1-0/+4
2022-12-21add py-psij-python and py-pystache packages (#34357)Andre Merzky3-0/+49
* add psij package and deps * update hashes, URLs * linting * Update var/spack/repos/builtin/packages/py-psij-python/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-pystache/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-pystache/package.py Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com> * Update package.py apply suggested change * Update package.py apply suggested change * Update package.py ensure maintainer inheritance * add psij to exaworks meta-package Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-12-21paraview: patch catalyst etc. to build with oneapi (#33562)Howard Pritchard2-0/+48
without this patch, build of paraview has a meltdown when reaching 3rd party catalyst and other packages with these types of errors: 335 /tmp/foo/spack-stage/spack-stage-paraview-5.10.1-gscoqxhhakjyyfirdefuhmi2bzw4scho/spack-src/VTK/ThirdParty/fmt/vtkfmt/vtkfmt/format.h:1732:11: error: cannot capture a bi t-field by reference 336 if (sign) *it++ = static_cast<Char>(data::signs[sign]); 337 ^ Signed-off-by: Howard Pritchard <howardp@lanl.gov> Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2022-12-21json: remove python 2 only code (#34615)Harmen Stoppels3-45/+5
2022-12-21py-cartopy: older versions don't support Python 3.10 (#34626)Adam J. Stewart1-14/+2
2022-12-21podio: add v0.16.2 (#34606)Thomas Madlener1-0/+1
2022-12-21relion: add v4.0.0 (#34600)Hector Martinez-Seara1-8/+5
2022-12-21glib: add 2.74.3 (#34603)Michael Kuhn1-0/+1
2022-12-21rocm: make amdgpu_target sticky (#34591)Cory Bloor11-11/+14
The sticky property will prevent clingo from changing the amdgpu_target to work around conflicts. This is the same behaviour as was adopted for cuda_arch in 055c9d125d29606947f2fd88a06e279667a74648.
2022-12-21eckit: skip broken test (#34610)Sergey Kosukhin1-1/+20
2022-12-21hpctoolkit: replace filter_file with upstream patch (#34604)Mark W. Krentel1-15/+7
Replace the filter_file for older configure with rocm 5.3 with an upstream patch. Further, the patch is no longer needed for develop or later releases.
2022-12-21dashan-runtime,darshan-util,py-darshan: update package versions for ↵shanedsnyder3-3/+12
darshan-3.4.2 (#34583)
2022-12-21arm-forge: add 22.1.2 (#34569)louisespellacy-arm1-0/+9
2022-12-21starpu: add conflict for ~blocking +simgrid (#34616)lpoirel1-0/+1
see https://gitlab.inria.fr/starpu/starpu/-/commit/1f5a911d43ba8e49f7229ab16f5dafdfdd596bd2
2022-12-21py-pyproj: add new versions (#34633)Adam J. Stewart1-6/+6
2022-12-21urlopen: handle timeout in opener (#34639)Harmen Stoppels1-4/+4
2022-12-21feat: 🎸 Add new 2023.0.0 oneVPL package (#34642)Andrey Perestoronin1-0/+6
2022-12-21py-vcrpy: add 4.2.1 (#34636)Manuela Kuhn1-0/+3
2022-12-21neko: add v0.5.0 (#34640)Niclas Jansson1-0/+1
2022-12-21hypre: add v2.27.0 (#34625)Rob Falgout1-0/+1
2022-12-21etags for index.json invalidation, test coverage (#34641)Harmen Stoppels4-97/+442
Implement an alternative strategy to do index.json invalidation. The current approach of pairs of index.json / index.json.hash is problematic because it leads to races. The standard solution for cache invalidation is etags, which are supported by both http and s3 protocols, which allows one to do conditional fetches. This PR implements that for the http/https schemes. It should also work for s3 schemes, but that requires other prs to be merged. Also it improves unit tests for index.json fetches.
2022-12-21Add patch for pika on macOS (#34619)Mikael Simberg2-0/+63
2022-12-20py-scikit-image: add 0.19.3 (#34618)Manuela Kuhn1-7/+21
* py-scikit-image: add 0.19.3 * Update var/spack/repos/builtin/packages/py-scikit-image/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-12-20DAV: VTK-m needs to install examples for smoke test (#34611)kwryankrattiger1-0/+3
SDK deployment targets being able to validate and run VTK-m via spack deployments, so examples should be installed.
2022-12-202023.0.0 oneAPI release promotion (#34617)Andrey Perestoronin14-0/+80
2022-12-20archspec: add support for zen4 (#34609)Massimiliano Culpo7-33/+98
Also add: - Upper bound for Xeon Phi compiler support - Better detection for a64fx
2022-12-19Remove dep on jupyter meta-package (#34573)Nicholas Knoblauch1-1/+1
2022-12-19py-nipype: add 1.8.5 and py-looseversion: add new package (#34608)Manuela Kuhn2-1/+25
2022-12-19Gromacs: added version 2022.4 (#34599)Hector Martinez-Seara1-0/+1
2022-12-19[ELPA] add sha256 for elpa-2022.11.001.rc2.tar.gz (#33439)Anton Kozhevnikov1-0/+15
2022-12-19py-horovod: patch no longer applies (#34593)Adam J. Stewart1-1/+1
2022-12-19aws-sdk-cpp: add v1.10.32 (#34592)Adam J. Stewart1-0/+1