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2021-01-18NAMD: FIX build +cuda and mpi ~smp (#20778)yellowhat1-2/+2
* NAMD: FIX build +cuda Hi, If I try to compile NAMD with CUDA support, it fails because cannot file the file "{self.arch}.cuda" because it is undet the "arch" folder. * NAMD: FIX mpi ~smp Fix `spack install namd ^charmpp backend=mpi ~smp`
2021-01-18Update versions of Wonton and Tangram packages (#20813)Rao Garimella2-3/+4
2021-01-18siesta: fix build with gfortran (#20840)Michael Kuron1-0/+2
Avoid Error: Line truncated at (1) [-Werror=line-truncation]
2021-01-18ssht: New version 1.3.4 (#20880)Erik Schnetter1-26/+9
* ssht: New version 1.3.4 ssht changed configuration mechanism from "home-grown" to "cmake. The previously current version 1.2b1 (a beta release) is thus unfortunately not available any more. * ssht: Don't set build type Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com> Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-01-18ParaView: add new ParaView-5.9.0-RC4 release (#21132)Vicente Bolea1-2/+2
* ParaView: add new ParaView-5.9.0-RC4 release Signed-off-by: Vicente Adolfo Bolea Sanchez <vicente.bolea@kitware.com> * ParaView: add official maintainer @vicentebolea Signed-off-by: Vicente Adolfo Bolea Sanchez <vicente.bolea@kitware.com>
2021-01-18salmon-tddft: add eigenexa variant (#21140)Toyohisa Kameyama1-0/+5
2021-01-18Make sure sio library is properly propagated (#20940)Thomas Madlener1-1/+1
2021-01-18ceres-solver: add v2.0.0 (#21005)darmac1-0/+1
2021-01-18Don't use CUDA for hipblas (#20935)Harmen Stoppels1-0/+9
* Don't use CUDA for hipblas * old versions use TRY_CUDA * Update var/spack/repos/builtin/packages/hipblas/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-01-18add version 2.2-2 to r-gwmodel (#21121)Glenn Johnson1-4/+20
* add version 2.2-2 to r-gwmodel * Update var/spack/repos/builtin/packages/r-gwmodel/package.py Fix comma, space issue. Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-01-18add version 0.3.17 to r-inline (#21053)Glenn Johnson1-3/+4
* add version 0.3.17 to r-inline * Drop R version constraint A really old version of R was specified in the 0.3.14 and 0.3.15 versions of r-inline. This constraint was dropped in the 0.3.17 version. Drop it from the spack recipe as well.
2021-01-18vasp: fix build with gfortran 10 and add version 6.1.1 (#20900)Michael Kuron1-1/+14
* vasp: fix build with gfortran 10 Avoid Error: Type mismatch between actual argument at (1) and actual argument at (2) * vasp: add version 6.1.1 * vasp 6: allow building without CUDA
2021-01-18Mapsplice2: Add new package (#20901)kuramoto-fj3-0/+127
2021-01-18Use shared=True to find libraries, since this is the default (#20907)Thomas Madlener1-4/+4
package also does not expose a shared variant
2021-01-18 New Package: Process-in-Process (PiP) -- 2nd trial (#20925)Atsushi Hori1-0/+177
* Adding PiP recipe * pip@1 recipe (it seems working) * change install dir hierarchy * installing PiP man pages * add pip-glibc & pip-gdb * fix configure option designations, fix dependency types * fix dependency type of pip * use AutotoolsPackage in pip recipe * add patch for pip-glibc & pip-gdb to enable 'disable-werror' * change glibc install directory * add linux distro check to pip-gdb * create process-in-process package * use flag_handler and join_path * add gcc version constraint, change install-test to check-installed * fix gcc version designations on conflicts() * add constraint of target cpu, fix flake8 warnings * add version constraint to resource() * Some fixes to adapt the current version not to execute 'piplnlibs' change documentation install command * Update new branch name of PiP-gdb adapting PiP-Testsuite * update pip-gdb github urls * The very first commit of Process-in-Process (PiP) details can be found at https://github.com/RIKEN-SysSoft/PiP * Fix comment style issues * New Package: Process-in-Process (PiP) -- 2nd trial * fix style issue * change inline comments style (required to have two spaces) Co-authored-by: Daiki Matsunaga <daikim@axe.bz>
2021-01-18gengetopt: Add texinfo depend (#20929)Tomoyasu Nojiri1-0/+2
2021-01-18Add SVN extension to Git (#20939)bryanherman2-0/+42
* added package for svn extension to perl * added svn variant to git recipe
2021-01-18eigenexa: new package. (#20934)takanori-ihara2-0/+113
2021-01-18Updated with requirements for openblas dependency (#20956)G-Ragghianti1-5/+2
* Updated with requirements for openblas dependency * Python style fixes
2021-01-18spfft: add version 1.0.0 (#20959)Simon Frasch1-1/+8
2021-01-18add version 1.2-9 to r-aer (#20965)Glenn Johnson1-1/+4
2021-01-18The latest version of imagemagick needs libtool linking (#20969)Glenn Johnson1-0/+1
Imagemagick-7.0.8 needs to link against libltdl. Otherwise, the build will fail with: ``` 2 errors found in build log: 503 checking for libltdl... 504 checking ltdl.h usability... no 505 checking ltdl.h presence... no 506 checking for ltdl.h... no 507 checking for lt_dlinit in -lltdl... no 508 checking if libltdl package is complete... no >> 509 configure: error: in `/tmp/gpjohnsn/spack-stage/spack-stage-imagemagick-7.0.8-7-4y44gaklhhciiwjzhfpxjfwdj5q ltjp3/spack-src': >> 510 configure: error: libltdl is required for modules and OpenCL builds 511 See `config.log' for more details ```
2021-01-18add version 3.3.3 to r-ggplot2 (#21021)Glenn Johnson1-13/+15
2021-01-18add version 0.6-2 to r-gmp (#21028)Glenn Johnson1-3/+7
2021-01-18add version 0.5-1 to r-gridgraphics (#21034)Glenn Johnson1-1/+8
2021-01-18add version 3.8.2 to r-gtools (#21038)Glenn Johnson1-29/+31
* add version 3.8.2 to r-gtools * Improve formatting of description In case the list gets formatted as a non-list: - added semicolons to end of list items - replaced dashes with [#]
2021-01-18add version 1.30 to r-knitr (#21061)Glenn Johnson1-4/+8
* add version 1.30 to r-knitr * Fix version constraints - r-digest - r-formatr The version constraints on those packages should actually be in the `when` clause.
2021-01-18add version 1.0-6 to r-libcoin (#21075)Glenn Johnson1-1/+4
2021-01-18add version 1.2.0 to r-gh (#21112)Glenn Johnson1-4/+9
2021-01-18add version 1.1.2 to r-tidyr (#21113)Glenn Johnson1-8/+22
2021-01-18new package: r-rcppdate (#21114)Glenn Johnson1-0/+24
'date' is a C++ header library offering extensive date and time functionality for the C++11, C++14 and C++17 standards written by Howard Hinnant and released under the MIT license. A slightly modified version has been accepted (along with 'tz.h') as part of C++20. This package regroups all header files from the upstream repository by Howard Hinnant so that other R packages can use them in their C++ code. At present, few of the types have explicit 'Rcpp' wrapper though these may be added as needed.
2021-01-18add version 2.0.2 to r-mnormt (#21115)Glenn Johnson1-6/+9
2021-01-18add version 3.12.0 to r-mice (#21116)Glenn Johnson1-17/+22
2021-01-18new package: r-mutoss (#21117)Glenn Johnson1-0/+26
Designed to ease the application and comparison of multiple hypothesis testing procedures for FWER, gFWER, FDR and FDX. Methods are standardized and usable by the accompanying 'mutossGUI'.
2021-01-18add version 2.0.4.1 to r-leaflet (#21118)Glenn Johnson1-1/+5
2021-01-18add version 2.1.0 to r-janitor (#21120)Glenn Johnson1-13/+21
2021-01-18new package: r-parallelly (#21122)Glenn Johnson1-0/+27
Utility functions that enhance the 'parallel' package and support the built-in parallel backends of the 'future' package. For example, availableCores() gives the number of CPU cores available to your R process as given by the operating system, 'cgroups' and Linux containers, R options, and environment variables, including those set by job schedulers on high-performance compute clusters. If none is set, it will fall back to parallel::detectCores(). Another example is makeClusterPSOCK(), which is backward compatible with parallel::makePSOCKcluster() while doing a better job in setting up remote cluster workers without the need for configuring the firewall to do port-forwarding to your local computer.
2021-01-18add version 2.0.0 to r-dbplyr (#21123)Glenn Johnson1-5/+11
2021-01-18[genfit] add tags and first version (#21127)vvolkl1-1/+4
2021-01-18[acts] Add version 4.1, bump minimal dependencies (#21128)Hadrien G1-9/+10
2021-01-18py-mdanalysis: correctly depend on py-gsd (#21133)Michael Kuron1-1/+1
2021-01-18python: improve building with Intel (#21134)Sergey Kosukhin1-2/+2
2021-01-18ibm-java: new version (#21135)dithwick1-0/+2
2021-01-18py-pycairo: update version and fix setup.py test error (#21004)darmac1-2/+5
* py-pycairo: update version and fix setup.py test error * py-pycairo: update dependency
2021-01-18hssp: Fix checksum for 3.0.10 (#20894)Tomoyasu Nojiri1-10/+10
* hssp: Fix checksum for 3.0.10 * hssp: Fix checksum for 3.0.1 to 3.0.9
2021-01-18mpas-model: New package. (#21124)Toyohisa Kameyama2-0/+96
* mpas-model: New package. * remove pnetcdf variant. remove debug print. * remove unnessesary line. * style fix.
2021-01-17added new python package py-f90wrap (#20957)bryanherman1-0/+22
2021-01-17Libconfuse: refine autoreconf and add some dependencies (#21006)darmac1-0/+6
* libconfuse: add some build dependencies * libconfuse: use autogen.sh to do the autoreconf
2021-01-17sz: version 2.1.11.1 (#21008)Robert Underwood1-0/+1
2021-01-17add version 0.4.2 to r-labeling (#21063)Glenn Johnson1-1/+4