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2018-05-24Fix missing spack.compiler import (#8240)Michael Kuhn1-0/+1
Fixes: #8258 #8090 altered import behavior so that import spack no longer provides access to many other Spack modules. This addresses a case which depended on the prior behavior and was not updated as part of #8090. This particular import error only came up when users were setting compiler flags on specs. See also: #8194
2018-05-24kokkos: update kokkos spackage to add current host/gpu architectures. (#8226)Geoff Womeldorff1-1/+49
* kokkos: update kokkos spackage to add current host/gpu architectures. * kokkos: simplify host/gpu architecture selection and make intent of arg population logic more clear. * kokkos: mollify flake8. * Make strings and logic more pythonic. Add error for GPU arch without CUDA. * kokkos: simplify conflicts behaviour. make args population more pythonic. * kokkos: move gpu values to list for use in variant and conflicts checking. * kokkos: How fortunate the man with None. * kokkos: fix gpu_arch conflict loop error. add conflict to guard against +cuda and 2.5.00:develop versions, until kokkos issue #1296 is resolved. * kokkos: mollify flake8. * kokkos: add descriptive message to version conflict with +cuda.
2018-05-24Charm++: Add possibility to build git version (#8260)Matthias Diener1-1/+7
2018-05-24Add msgpack-c 3.0.1 (#8264)Sajid Ali1-1/+2
* new file: cpp-3.0.1.tar.gz modified: package.py * deleted: cpp-3.0.1.tar.gz * remove whitespace
2018-05-24trf: make executable (#8265)Levi Baber1-0/+2
2018-05-24openfoam-org: add v2.4.0 (#7850)Chris Hadjigeorgiou2-11/+118
Add 2.4.0 changes
2018-05-24Fix MD5 hash for opencv 3.2.0 and 3.1.0 release (#8241)jkelling1-2/+2
2018-05-23Add info for datamash@1.3 (#8261)George Hartzell1-0/+1
2018-05-23Add kealib 1.4.7 (#8235)Adam J. Stewart2-7/+83
* Add kealib 1.4.7 * Fix out-of-source builds * Remove username from kealib hg clone
2018-05-23Add PROJ 5.0.1 (#8233)Adam J. Stewart1-3/+22
* Add PROJ 5.0.1 * proj-datumgrid resource must be placed in nad directory
2018-05-23mvapich2: added a proper libs attribute (#8253)Massimiliano Culpo1-0/+12
2018-05-23Add pkgconf 1.4.2 (#8256)Adam J. Stewart1-3/+7
2018-05-23Add ncurses 6.1 (#8257)Adam J. Stewart1-1/+2
2018-05-23charm: Update install script (#7291)Edward Kim1-45/+94
* charm: Update install script * Addressed PR comments * Removed destination and suffix variants * Added back parallel support
2018-05-23gromacs: added version 2018.1 (#8251)Massimiliano Culpo1-0/+1
2018-05-23cgal: added version 4.12 (#8252)Massimiliano Culpo1-0/+1
2018-05-23Update BookLeaf_Cpp and Typhon packages. (#8249)Tim Law2-0/+2
2018-05-23Add latest versions of bazel (#8250)Leonhard Reichenbach2-3/+130
2018-05-23Package/mirdeep/fix for new url take2 (#8247)Sinan1-4/+4
* rename: mirdeep -> mirdeep2 * fixes for new url
2018-05-22Create new package: memkind (#8242)Leonhard Reichenbach1-0/+68
* Create new package: memkind * some style changes * fix type of numactl dependency * fix flake8 errors * use patch() instead of a custom build phase
2018-05-22Add py-docopt package (#8236)Adam J. Stewart1-0/+38
2018-05-22subread: added version 1.6.2 (#8239)Massimiliano Culpo1-0/+1
2018-05-22CUDA 9.2 (#8238)Axel Huebl2-7/+11
Add the latest CUDA release, v9.2 and updated CUDA Compatibility Matrix
2018-05-21Update GlobalArrays package to new releases (#7840)Tim Stavenger2-279/+45
* update globalarrays package to current releases * rename class to Globalarrays to match package folder * rename bytes to int64, minor cleanup of descriptions * int64 False by default * remove reference to external as we aren't supplying paths, and use args.append() * correcting args.append syntax * add conflicts
2018-05-21gdbm: Get working on CentOS5 and Other Older Systems (#8134)Elizabeth Fischer1-1/+9
* Fix #7691 * flake8 * code review
2018-05-21netcdf-cxx4: Update to use CPPFLAGS (#8148)Elizabeth Fischer2-0/+6
* Fix bug; don't know why this ever worked in the first place. * Add fix to netcdf-fortran too; flake8 * Simplify configure_args() * netcdf-fortran: simplify that too
2018-05-21Create new package: fastgbs and its dependency platypus. (#8174)lingnanyuan2-0/+97
* pushing partially done recipe for fast-gbs and platypus * modify platypus * change header * fast-gbs: change dependency type. * modify dependency type. * modify dependency type. * fast-gbs: Change dependency type to run.
2018-05-21r-cghflasso v0 2 1 - new package (#8177)peetsv1-0/+36
* py-pyfaidx: adding new package * updating the url * r-cghflasso v0.2-1 new package * correcting copy/paste error * adding list_url
2018-05-21Add urls into cbtf* and openspeedshop* package files and update the release ↵Jim Galarowicz8-112/+121
versions for the Krell products (#8188)
2018-05-21Rename Tpetra C wrappers for *gemm Fortran functions in Trilinos 12.12.1 (#8228)Dan FitzGerald2-2/+293
* Updated trilinos to compile/install with xl_r * Undo PGI patch added as part of Trilinos XL fix * Remove PGI related changes in Trilinos XL fix
2018-05-21Add Python/Ruby bindings to GEOS package (#8218)Adam J. Stewart1-20/+35
* Add python/ruby bindings to GEOS package * Add comment on Python 3 support
2018-05-21Add lcms 2.9 (#8219)Adam J. Stewart1-1/+3
2018-05-21Add missing dependencies to poppler package (#8220)Adam J. Stewart2-3/+162
2018-05-21Add bmake 20180512 (#8221)Adam J. Stewart1-16/+18
* Add bmake 20180512 * Re-add manpage patch
2018-05-21py-testinfra: Add versions 1.12.0 and 1.13.0 (#8222)Eric1-0/+2
2018-05-21Add info about haveged to gpg/randomness note (#8227)George Hartzell1-3/+18
2018-05-21Update the hash of libjpeg v9c. (#8230)mcneish11-1/+1
The maintainer redid the archive in March, removing a .directory file.
2018-05-21Add cryptopp 7.0.0 (#8224)Adam J. Stewart1-18/+11
2018-05-21Updated sbt to point to github. Added versions 1.1.4, 0.13.17. (#7951)Massimiliano Culpo1-3/+4
2018-05-20Add PCRE2 10.31 (#8214)Adam J. Stewart1-1/+3
2018-05-20Add PCRE 8.42 (#8213)Adam J. Stewart1-1/+2
2018-05-20Add sqlite 3.23.1 (#8212)Adam J. Stewart1-0/+2
2018-05-20Add libxml2 2.9.8 (#8211)Adam J. Stewart1-1/+3
2018-05-20Add cURL 7.60.0 (#8210)Adam J. Stewart1-1/+2
2018-05-20Add Xerces-C++ 3.2.1 (#8208)Adam J. Stewart1-1/+2
2018-05-20Add FYBA package (#8205)Adam J. Stewart2-0/+96
2018-05-20Add libgeotiff package (#8203)Adam J. Stewart1-0/+70
2018-05-20URL parsing: strip x86-64 from filename (#8200)Adam J. Stewart2-2/+4
2018-05-20Add xz 5.2.4 (#8202)Adam J. Stewart1-4/+6
2018-05-20Add libtiff 4.0.9 (#8201)Adam J. Stewart1-2/+4