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2023-04-28bricks: Fix package to properly find spack opencl-clhpp (#37239)John Jolly2-2/+22
The bricks package uses header from the opencl-clhpp package when built with the cuda variant activated. In order to find the header files, the bricks CMakeLists.txt uses the `find_package(OpenCL 2.0)` statement. The CMake FindOpenCL module searches several paths to find the header files. Eventually it will search for header files in the local /usr/include directories. If OpenCL headers are found, but CUDA is not installed locally, then the build will fail. One of the CMake variables searched for a path to the OpenCL headers is OCL_ROOT. This fix utilizes the OCL_ROOT variable to identify the correct path to the install opencl-clhpp package within Spack. Also, if the cuda variant is not used, then the OpenCL build is disabled to prevent a build failure due to improperly-identified locally-installed OpenCL header files. The default behavior of the build process has not changed. An external variable definitions must be made to activate these features. Specifically, to disable the OpenCL build, this flag must be provided to CMake: -DBRICK_USE_OPENCL=OFF The Spack build process explicitly uses this option unless the cuda variant is specified. If the cuda variant is specified, then the BRICK_USE_OPENCL variable is set to ON and the OCL_ROOT variable is set to the path of the opencl-clhpp include directory.
2023-04-28apfel: add v3.0.6 (#37267)Alec Scott1-0/+1
2023-04-28cmor: add v3.7.2 (#37268)Alec Scott1-0/+1
2023-04-28figtree: add v1.4.4 (#37269)Alec Scott1-0/+1
2023-04-28fping: add v5.1 (#37270)Alec Scott1-0/+1
2023-04-28gapbs: add v1.4 (#37271)Alec Scott1-0/+1
2023-04-28glfw: add v3.3.8 (#37272)Alec Scott1-0/+1
2023-04-28jemalloc: add v5.3.0 (#37273)Alec Scott1-0/+1
2023-04-28sandbox: add v2.25 (#37274)Alec Scott1-0/+1
2023-04-28snap-berkeley: add v2.0.3 (#37275)Alec Scott1-0/+1
2023-04-28tcpdump: add v4.99.4 (#37276)Alec Scott1-0/+1
2023-04-28wps: add v4.5 (#37277)Alec Scott1-0/+1
2023-04-28py-subword-nmt (#37161)Sangu Mbekelu1-0/+19
* "new py-subword-nmt package" * [@spackbot] updating style on behalf of Sangu-Mbekelu * Update package.py updating package based on review * [@spackbot] updating style on behalf of Sangu-Mbekelu --------- Co-authored-by: Sangu Mbekelu <s.mbekelu9@gmail.com>
2023-04-27py-virtualenv: add 20.22.0 (#37259)Manuela Kuhn4-29/+55
* py-virtualenv: add 20.22.0 * [@spackbot] updating style on behalf of manuelakuhn * Fix dependency versions for release 20.22.0 * Remove python version restrictions * [@spackbot] updating style on behalf of manuelakuhn * py-platformdirs: add 3.5.0 * py-filelock: add 3.12.0 * Fix dependency bound for py-platformdirs * py-importlib-metadata: add 6.6.0
2023-04-27macOS: use Apple GL/GLU by default (#36618)Adam J. Stewart3-21/+19
* macOS: use Apple GL/GLU by default * Use CLT instead * Use CLT instead * Undo change to libuuid
2023-04-27legion: add versions up to 23.03.0 (#37257)eugeneswalker1-1/+9
* legion: add versions up to 23.03.0 * add maintainer
2023-04-27[py-breathe] New version 4.35.0 (#37233)Chris Green1-1/+3
* [py-breathe] New version 4.35.0 * Update var/spack/repos/builtin/packages/py-breathe/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-04-27fixes #29350 by enabling headers variant in binutils when compiling llvm ↵Thomas-Ulrich1-1/+1
with gold (#37245)
2023-04-27py-memory-profiler: add 0.61.0 (#37248)Manuela Kuhn1-0/+2
2023-04-27[py-sphinx-design] New versions 0.4.0, 0.4.1 (#37234)Chris Green1-1/+4
* [py-sphinx-design] New versions 0.4.0, 0.4.1 * conflicts() -> depends_on() Per @adamjstewart Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-04-27gcc: add v13.1.0 (#37230)Massimiliano Culpo1-1/+6
version 13.1 builds with apple-clang@14.0.3
2023-04-27gcc: no need to special case macos/linux wrt rpaths (#37243)Harmen Stoppels1-6/+1
2023-04-27Fix pkgconfig dependencies (#37236)Michael Kuhn7-7/+7
Packages shouldn't typically depend on pkg-config or pkgconf but on the virtual provider pkgconfig.
2023-04-27r-covr: add v3.6.2 (#37194)Alec Scott1-0/+1
2023-04-26py-gssapi: depends_on krb5 (#37227)Wouter Deconinck1-0/+1
This dependency was somehow overlooked (but is pretty crucial) because it doesn't appear in the python requirements...
2023-04-26py-bidscoin: add 4.0.0 and py-pydeface as new deb package (#37231)Manuela Kuhn2-0/+28
2023-04-26py-mypy: add 1.2.0 (#37224)Manuela Kuhn1-0/+1
2023-04-26py-flake8: add 6.0.0 and update dependencies (#37222)Manuela Kuhn3-0/+9
2023-04-26r-afex: add v1.2-1 (#37188)Alec Scott1-0/+1
2023-04-26r-argparse: add v2.2.2 (#37189)Alec Scott1-0/+1
2023-04-26r-bit: add v4.0.5 (#37190)Alec Scott1-0/+1
2023-04-26r-loo: add v2.6.0 (#37205)Alec Scott1-1/+3
* r-loo: add v2.6.0 * Split r dependency from other deps to align with common r package style
2023-04-26r-bookdown: add v0.33 (#37191)Alec Scott1-0/+3
* r-bookdown: add v0.33 * Add r@3.5.0: dependency to package
2023-04-26r-compositions: add v2.0-6 (#37192)Alec Scott1-0/+2
* r-compositions: add v2.0-6 * Split r dependecies from other r packages to match common format
2023-04-26r-convevol: add v2.0.0 (#37193)Alec Scott1-0/+1
2023-04-26r-desolve: add v1.35 (#37195)Alec Scott1-0/+1
2023-04-26r-fastmap: add v1.1.1 (#37196)Alec Scott1-0/+1
2023-04-26r-formatr: add v1.14 (#37197)Alec Scott1-0/+1
2023-04-26r-ggvis: add v0.4.8 (#37198)Alec Scott1-0/+1
2023-04-26r-glmnet: add v4.1-7 (#37199)Alec Scott1-0/+2
* r-glmnet: add v4.1-7 * Split r dependency from other deps to follow common format
2023-04-26r-insight: add v0.19.1 (#37200)Alec Scott1-0/+1
2023-04-26r-interp: add v1.1-4 (#37201)Alec Scott1-0/+2
* r-interp: add v1.1-4 * split r dep from other dependencies to match common format
2023-04-26r-jomo: add v2.7-6 (#37202)Alec Scott1-0/+1
2023-04-26r-lattice: add v0.21-8 (#37204)Alec Scott1-0/+2
* r-lattice: add v0.21-8 * Enforce a higher version of R as according to cran
2023-04-26r-magic: add v1.6-1 (#37206)Alec Scott1-0/+1
2023-04-26r-maptools: add v1.1-6 (#37207)Alec Scott1-0/+1
2023-04-26r-meta: add v6.2-1 (#37208)Alec Scott1-0/+1
2023-04-26spdk: add a new package (#35520)H. Joe Lee1-0/+81
* spdk: add a new package * chore: fix formatting and style * fix: add rdma-core dependency * fix: remove spdk < 23.01 versions per @soumagne review * spdk: add 22.01.1 version * spdk: address @soumagne reviews * spdk: fix fio audit failure * spdk: fix fio version and remove debugging info
2023-04-27scitokens-cpp: depends_on pkgconfig (#37168)Wouter Deconinck1-0/+1
A missing dependency, showing up as: ```console #24 1113.1 3 errors found in build log: #24 1113.1 20 -- Check for working CXX compiler: /opt/spack/lib/spack/env/gcc/g++ #24 1113.1 - skipped #24 1113.1 21 -- Detecting CXX compile features #24 1113.1 22 -- Detecting CXX compile features - done #24 1113.1 23 -- Found CURL: /opt/software/linux-debian-x86_64_v3/gcc-12.2.0/curl- #24 1113.1 7.85.0-ca5zznsdkp2hwbnikha6sgqzcpuw74sc/lib/libcurl.so (found versio #24 1113.1 n "7.85.0") #24 1113.1 24 -- Found UUID : /opt/software/linux-debian-x86_64_v3/gcc-12.2.0/util #24 1113.1 -linux-uuid-2.38.1-45xrjgjjauvev5qarwji7xgmlnhqlzkh/lib/libuuid.so #24 1113.1 25 -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) #24 1113.1 >> 26 CMake Error at /opt/software/linux-debian-x86_64_v3/gcc-12.2.0/cmake #24 1113.1 -3.24.3-6doi3daa6ihw6mk4zbk5oiiuiaahsny7/share/cmake-3.24/Modules/Fi #24 1113.1 ndPkgConfig.cmake:663 (message): #24 1113.1 27 pkg-config tool not found #24 1113.1 28 Call Stack (most recent call first): #24 1113.1 29 /opt/software/linux-debian-x86_64_v3/gcc-12.2.0/cmake-3.24.3-6doi3 #24 1113.1 daa6ihw6mk4zbk5oiiuiaahsny7/share/cmake-3.24/Modules/FindPkgConfig.c #24 1113.1 make:829 (_pkg_check_modules_internal) #24 1113.1 30 CMakeLists.txt:39 (pkg_check_modules) #24 1113.1 31 #24 1113.1 32 ``` Ref: https://github.com/scitokens/scitokens-cpp/blob/v1.0.0/CMakeLists.txt#L32
2023-04-26py-ipyrad (#37160)Trevor [LAS]1-0/+49
* Adding py-ipyrad for testing * py-ipyrad: placating flake8 * py-ipyrad: adding version 0.9.90, fixing hard coded path. * py-ipyrad: use join_path instead of hard coded linux path Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * py-ipyrad: Removing unneeded dependencies * py-ipyrad: Readded future (see ipyrad setup.py) * py-ipyrad: Switch to an anchored link in the docs Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * py-ipyrad: Removed patch decorator --------- Co-authored-by: snehring <snehring@iastate.edu> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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