Age | Commit message (Collapse) | Author | Files | Lines | |
---|---|---|---|---|---|
2017-10-13 | r-preprocesscore: added versioned dependency on r (#5671) | Yifan Zhu | 1 | -0/+1 | |
2017-10-13 | r-rmpi: added list_url and updated md5 (#5698) | Yifan Zhu | 1 | -2/+2 | |
2017-10-13 | r-edger: added versioned dependency on r (#5669) | Yifan Zhu | 1 | -0/+1 | |
2017-10-13 | r-s4vectors: added versioned dependency on r (#5672) | Yifan Zhu | 1 | -0/+2 | |
2017-10-13 | likwid: update versions (#5757) | Denis Davydov | 1 | -0/+3 | |
2017-10-13 | r-xvector: added versioned dependency on r (#5731) | Yifan Zhu | 1 | -0/+1 | |
2017-10-13 | flake8: fix warnings (#5759) | Satish Balay | 3 | -4/+4 | |
2017-10-13 | Use cflags instead of the args variable (#5756) | Ondřej Čertík | 1 | -3/+5 | |
That way the user can still append things to CFLAGS. | |||||
2017-10-13 | py-espresso: initial commit (#5724) | Christoph Junghans | 1 | -0/+52 | |
2017-10-13 | espressopp -> py-espressopp (#5732) | Christoph Junghans | 1 | -2/+6 | |
* espressopp -> py-espressopp * Update package.py | |||||
2017-10-13 | Docker Workflow (#5582) | Axel Huebl | 1 | -0/+143 | |
This adds a workflow section on how to use spack on Docker. It provides an example on the best-practices I collected over the last months and circumvents the common pitfalls I tapped in. Works with MPI, CUDA, Modules, execution as root, etc. Background: Developed initially for PIConGPU. | |||||
2017-10-13 | Fix m4 to compile with Intel (#5728) | Ondřej Čertík | 1 | -0/+3 | |
Fixes #5705. | |||||
2017-10-13 | r-biostrings: added versioned dependency on r (#5667) | Yifan Zhu | 1 | -0/+1 | |
2017-10-13 | r-zlibbioc: added versioned dependency on r (#5674) | Yifan Zhu | 1 | -0/+1 | |
2017-10-13 | trilinos / oce : add missing if before calling macOS_version (#5743) | Denis Davydov | 2 | -2/+3 | |
* trilinos: add missing if before calling macOS_version * oce: add missing if before calling macOS_version | |||||
2017-10-13 | r-readr: created new package (#5741) | Yifan Zhu | 1 | -0/+43 | |
2017-10-13 | r-dorng: created new package (#5740) | Yifan Zhu | 1 | -0/+46 | |
2017-10-13 | r-stringr: added list_url and version 1.2.0 (#5738) | Yifan Zhu | 1 | -0/+2 | |
2017-10-13 | r-stringi: added list_url and version 1.1.5 and 1.1.3 (#5737) | Yifan Zhu | 1 | -0/+3 | |
2017-10-13 | r-summarizedexperiment: created new package (#5734) | Yifan Zhu | 1 | -0/+47 | |
2017-10-13 | r-yaqcaffy: added list_url and versioned dependency on r (#5730) | Yifan Zhu | 1 | -0/+2 | |
2017-10-13 | slepc: refine version constraints for petsc 3.8 (#5752) | Denis Davydov | 1 | -4/+8 | |
2017-10-13 | openblas: remove extra develop version (#5750) | Denis Davydov | 1 | -2/+0 | |
2017-10-13 | gettext: fix prefix (#5749) | Denis Davydov | 1 | -1/+1 | |
2017-10-12 | Lbann flags (#5747) | Brian Van Essen | 2 | -3/+2 | |
* Fixed the datatype flag in the LBANN package. Also added develop version to OpenBLAS. * Fixed where the datatype flag should be set. | |||||
2017-10-12 | r-gcrma: added versioned dependency on r (#5670) | Yifan Zhu | 1 | -0/+1 | |
2017-10-12 | r-simpleaffy: added versioned dependency on r (#5673) | Yifan Zhu | 1 | -0/+1 | |
2017-10-12 | petsc: add in maintainers (#5729) | Satish Balay | 1 | -0/+2 | |
2017-10-12 | Add the option for a versioned layout to boost (#5709) | David Hows | 1 | -0/+6 | |
2017-10-12 | kaks-calculator: new package (#5725) | Audrey Thoma | 1 | -0/+59 | |
* kaks-calculator: new package * kaks-calculator: new package * fixing homepage | |||||
2017-10-12 | petsc: update to latest 3.8 version [and include 3.7.7] (#5723) | Satish Balay | 1 | -1/+3 | |
Also fix flake8 warning "import os should be before import sys" | |||||
2017-10-12 | Add OpenFAST package (wind turbine simulation tool). (#5662) | Jon Rood | 1 | -0/+93 | |
* Add OpenFAST package (wind turbine simulator). * Adding maintainer to openfast package. * Fixing copyright date. | |||||
2017-10-12 | various fixes for macOS high sierra (#5647) | Denis Davydov | 7 | -5/+52 | |
* various fixes for macOS high sierra * add macOS_version() helper function * flake8 fixes * update oce and trilinos * fix bison | |||||
2017-10-12 | Make --trusted default when running spack gpg list (#5678) | David Hows | 2 | -1/+2 | |
* Make --trusted default when running spack gpg list Currently running `spack gpg list` with no arguments returns nothing. You must supply either the `--trusted` or the `--signing` options. The idea here is to return some initial data to the user when the command is run. The alternative is to return an error, telling the user to select one of the two options. * Add an extra test case for the empty list command Fixes the issue with code coverage | |||||
2017-10-12 | Speed up concretization (#5716) | Todd Gamblin | 4 | -17/+23 | |
This isn't a rework of the concretizer but it speeds things up a LOT. The main culprits were: 1. Variant code, `provider_index`, and `concretize.py` were calling `spec.package` when they could use `spec.package_class` - `spec.package` looks up a package instance by `Spec`, which requires a (fast-ish but not that fast) DAG compare. - `spec.package_class` just looks up the package's class by name, and you should use this when all you need is metadata (most of the time). - not really clear that the current way packages are looked up is necessary -- we can consider refactoring that in the future. 2. `Repository.repo_for_pkg` parses a `str` argument into a `Spec` when called with one, via `@_autospec`, but this is not needed. - Add some faster code to handle strings directly and avoid parsing This speeds up concretization 3-9x in my limited tests. Still not super fast but much more bearable: Before: - `spack spec xsdk` took 33.6s - `spack spec dealii` took 1m39s After: - `spack spec xsdk` takes 6.8s - `spack spec dealii` takes 10.8s | |||||
2017-10-12 | samtools: add version 1.6 + some fixes (#5715) | Carlos Bederián | 3 | -9/+11 | |
* htslib: add version 1.6 * samtools: add version 1.6, remove zlib dependency * bcftools: add version 1.6, switch to using standalone htslib | |||||
2017-10-12 | minimap2: new package (#5722) | Audrey Thoma | 2 | -0/+77 | |
2017-10-12 | Initial version of libpcap (#5710) | David Hows | 1 | -0/+34 | |
Add a package script for libpcap with the current version (1.8.1) | |||||
2017-10-12 | Better install output (#5714) | Todd Gamblin | 6 | -20/+17 | |
* Do not call setup_package for fake installs - setup package could fail if ``setup_dependent_environment`` or other routines expected to use executables from dependencies - xpetsc and boost try to get python config variables in `setup_dependent_package`; this would cause them not to be fake-installable * Remove vestigial deptype_query argument to Spec.traverse() - The `deptype_query` argument isn't used anymore -- it's only passed around and causes confusion when calling traverse. - Get rid of it and just keep the `deptypes` argument * Don't print redundant messages when installing dependencies - `do_install()` was originally depth-first recursive, and printed "<pkg> already installed in ..." multiple times for packages as recursive calls encountered them. - For much cleaner output, use spec.traverse(order='post') to install dependencies instead | |||||
2017-10-11 | r-affy: added versioned dependency on r (#5660) | Yifan Zhu | 1 | -0/+1 | |
2017-10-11 | r-affyio: added versioned dependency on r (#5661) | Yifan Zhu | 1 | -0/+1 | |
2017-10-11 | r-biocinstaller: added versioned dependency on r (#5663) | Yifan Zhu | 1 | -1/+1 | |
2017-10-11 | r-matrixstats: created new package (#5682) | Yifan Zhu | 1 | -0/+40 | |
2017-10-11 | r-biocgenerics: added version 0.22.1 and added versioned dependency on r (#5683) | Yifan Zhu | 1 | -0/+4 | |
2017-10-11 | r-genomeinfodbdata: added versioned dependency on r (#5685) | Yifan Zhu | 1 | -0/+1 | |
2017-10-11 | r-genomeinfodb: created new package (#5695) | Yifan Zhu | 1 | -0/+46 | |
2017-10-11 | r-genomicranges: added new package (#5697) | Yifan Zhu | 1 | -0/+52 | |
2017-10-11 | r-futile-options: created new package (#5699) | Yifan Zhu | 1 | -0/+34 | |
2017-10-11 | r-lambda-r: created new package (#5700) | Yifan Zhu | 1 | -0/+36 | |
2017-10-11 | r-futile-logger: created new package (#5701) | Yifan Zhu | 1 | -0/+40 | |