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2018-06-17There's only one 'u' in "configuration" (#8498)George Hartzell1-1/+1
2018-06-17Add new versions for TAU and PDT package (#8497)Pramod Kumbhar2-0/+6
2018-06-17Add changes to the Krell packages with version updates and ranges for the ↵Jim Galarowicz7-112/+99
latest release. (#8468) * Add changes to the Krell packages with version updates and ranges for the latest release. * Add reviewer requested changes. Remove preferred clauses and update the qt version for the cbtf-argonavis-gui@develop * Trigger integration/test restart
2018-06-17docs: remove vendored sphinx_rtd_theme (#8496)Todd Gamblin29-1124/+4
2018-06-16Trilinos needs parallel-netcdf as an explicit dependency to avoid ↵Jon Rood1-0/+1
concretization errors when netcdf is an external. (#8493)
2018-06-16superlu_dist: 'master' is branch - not tag (#8495)Satish Balay1-1/+1
==> Trying to clone git repository: https://github.com/xiaoyeli/superlu_dist at tag master Fetching tags only, you probably meant: git fetch --tags
2018-06-15SAMRAI: new versions, handle deprecation of boost in latest version. (#8494)Jon Rood1-2/+16
2018-06-15Fix GDAL Python bindings and add import tests (#8482)Adam J. Stewart1-4/+23
2018-06-15Add newer likwid versions 4.3.1 and 4.3.2 (#8488)Pramod Kumbhar1-0/+2
2018-06-15Package/geopm: Update to version 0.5.0 (#8487)Matthias Maiterth1-0/+1
2018-06-15[mfem] Add BLAS+LAPACK to the required dependencies of SuperLU_DIST. (#8485)Veselin Dobrev1-2/+4
2018-06-15openssl: add new version 1.0.2o (#8486)Todd Gamblin1-1/+2
2018-06-14Update the clang compiler definition to use IBM XL Fortran compiler (#8389)Dan FitzGerald1-2/+6
on CORAL systems (linux-rhel7-ppc64le).
2018-06-14 Patch trilinos for xlf when using clang (#8391)Dan FitzGerald1-0/+2
* Add patching for xlf when %clang. Changes are effective only when Fortran compiler is 'XL'. * Use the right version for trilinos when patching for seacas.
2018-06-14Use no mangling for all spack compiler definitions that use the XL (#8392)Dan FitzGerald1-1/+2
Fortran compiler. Clang can build with IBM XL Fortran compiler as well, so the name mangling shoud be avoided for that case as well.
2018-06-14Use the name of the Fortran compiler to determine what name mangling (#8393)Dan FitzGerald1-1/+1
setting to use, instead of the spack compiler. %clang can use multiple Fortran compilers with different options, so we need to know what compiler is used in order to provide the correct options.
2018-06-14A new package: megahit. (#8471)健美猞猁1-0/+44
2018-06-14neovim: add info for v0.3.0 (#8472)Matthias Wolf1-0/+1
2018-06-14oce: add 0.18.3 (#8477)Denis Davydov1-1/+2
2018-06-14netgen should depend on zlib (#8473)Praveen C1-0/+1
2018-06-14openblas: add 0.3.0 (#8478)Denis Davydov1-0/+1
2018-06-14petsc: add 3.9.1 and 3.9.2 (#8479)Denis Davydov1-0/+2
2018-06-14slepc: add 3.9.1 (#8480)Denis Davydov1-0/+1
2018-06-14superlu-dist: add 5.3.0 and 5.4.0 (#8481)Denis Davydov1-0/+2
2018-06-13boost package: patch dirent for pgi and boost 1.67 (#8313)Serban Maerean2-0/+14
2018-06-13xsdk: fix 'ChecksumError: md5 checksum failed' (#8440)Satish Balay1-1/+1
[error came up with the prior url pointing to a 'master' branch. so fixing with a switch to a fixed tarball]
2018-06-13xsdk: update xsdk@develop dependency on mfem@develop (#8462)Satish Balay1-1/+1
2018-06-13[mfem] new version: 3.4 (#8453)Veselin Dobrev4-9/+142
* Add new version (3.4.0) with new variant (pumi). * Fix an issue: skip the tests in examples/pumi as they require files that are not included in the mfem distribution/repository. * Use patches to fix the testing issues with PUMI and PETSc v3.9. * Use the new bit.ly short link for v3.4.
2018-06-13Add the ability to build the dyninst master branch under the develop version ↵Jim Galarowicz3-8/+34
name. (#8455) * Add the ability to build the dyninst master branch under the develop version name. Fix elfutils and libdwarf to work with the various dyninst versions and vice-versa. * Add reviewer suggested change to dyninst package file. Remove colon in spec.satisfies clause. * Add reviewer suggested change to dyninst package file. Remove duplicate lines. * Add reviewer suggested change to dyninst package file. Encompass all versions under 10.0 with respect to using libdwarf in the build.
2018-06-13new package: ASPECT (#8459)Timo Heister1-0/+56
* add ASPECT package * add maintainer * simplify
2018-06-13ADIOS: Revert Patch (#8463)Axel Huebl2-19/+0
That patch is only a partial solution and does not solve the issue. Revert is, unnecessary.
2018-06-13Add: MPILander (#8464)Axel Huebl1-0/+64
MPILander - There can only be one (MPI process)! The final MPI implementation.
2018-06-13gplates: new package (#8336)Michael Kuhn3-55/+148
This also adds an older 1.x version to gdal that is required by gplates.
2018-06-13openfoam-com: added submodule flag to git fetch (#8446)Simone Bnà1-1/+1
2018-06-13blasr-libcpp: new package (#8366)Miles Perry1-0/+73
* blasr-libcpp: new package * blasr-libcpp: added version #, and moved make into build phase. * blasr-libcpp: added prefix.include to PBBAM_INC, added version URL * blasr-libcpp: indented comments, made list of configure_args, and added prefix.include * blasr-libcpp: added setup_dependent_environment from blasr * blasr-libcpp: fixed syntax for configure_args * blasr-libcpp: fixed configure_args syntax * blasr-libcpp: fixed syntax * blasr-libcpp: syntaxtest * blasr-libcpp: fixed def build error * blasr-libcpp: edited dependent environment to move after install phase * blasr-libcpp: rearranged build and install * blasr-libcpp: added configure_args * blasr-libcpp: fixed syntax error * blasr-libcpp: removed .spec from INC and LIB alignment, pbdata, hdf * blasr-libcpp: seperated configure args * blasr-libcpp: edited configure and setup_dependent steps * blasr-libcpp: added CPATH arg * blasr-libcpp: C_INCLUDE_PATH * blasr-libcpp: fixed install issues resulting from PacBio change
2018-06-13trilinos: use 'branch' option to specify branches such as develop/master ↵Satish Balay1-2/+2
[they are not tags] (#8448) Fixes the following problem: ==> Installing trilinos ==> Warning: Suspicious requests to set or unset 'LD_LIBRARY_PATH' found ==> Warning: env.unset('LD_LIBRARY_PATH') at /home/balay/spack.new/lib/spack/spack/build_environment.py:269 ==> Warning: ---> env.set('%s' % key, value) at /home/balay/spack.new/lib/spack/spack/build_environment.py:292 ==> Trying to clone git repository: https://github.com/trilinos/Trilinos.git at tag develop Fetching tags only, you probably meant: git fetch --tags error: pathspec 'develop' did not match any file(s) known to git. ==> Fetching from [git] https://github.com/trilinos/Trilinos.git failed. ==> Error: FetchError: All fetchers failed for trilinos-develop-tgkpnctp6nn4imoizxlw4ymqyztcie4n
2018-06-13new package: dealii-parameter-gui (#8456)Timo Heister1-0/+40
2018-06-13petsc: 'master' is a branch - not a tag - so fix it accordingly. (#8457)Satish Balay1-1/+1
2018-06-13[GLVis] Add new version: 3.4 (#8454)Veselin Dobrev1-5/+13
* [glvis] Add new version, 3.4; update all checksums to be SHA-256. * [GLVis] Use the new bit.ly short link for v3.4.
2018-06-12new package: pdftk (#8166)Elizabeth Fischer2-0/+171
2018-06-12Add trailing slash when spidering URLs for versions (#8429)Adam J. Stewart1-0/+7
By default, if a package does not specify a list_url and does not download from a common repository, Spack runs dirname on the package URL. Given a URL like https://root.cern.ch/download/root_v6.09.02.source.tar.gz, this returns https://root.cern.ch/download. However, https://root.cern.ch/download gives a 404, while https://root.cern.ch/download/ works just fine. Note that some servers *don't* work with a trailing slash, so this tries with and without the slash. This will double the number of URLs searched but the slowdown should only affect the "spack versions" command.
2018-06-12Package: ISAAC 1.4.0 (#8447)Axel Huebl2-2/+4
2018-06-12superlu_dist: fix 'spack install superlu-dist@develop' (#8442)Satish Balay1-0/+1
Latest superlu_dist sources now use INCLUDEDIR. This change should not affect older superlu_dist version builds
2018-06-11Fixed compilation of quantum-espresso (#8439)Massimiliano Culpo1-2/+20
The patch to select ELPA API needs to be applied to version 6.2.0 too. The link line of hdf5 is computed incorrectly from the configuration part of the build-system. To fix this the relevant file (make.inc) is patched.
2018-06-11boost: fix cxxstd=default (#8438)Denis Davydov1-1/+3
2018-06-11Add new package: unuran (#8397)Javier Cervantes1-0/+60
* Add new package: unuran * Remove list_url and prng variant due to compilation problems * Make shared library option more explicit
2018-06-10arpack-ng: add 3.6.0 (#8433)Denis Davydov1-0/+1
2018-06-10A new package: axel. (#8434)健美猞猁1-0/+42
* A new package: axel. * Remove duplicate pkgconf.
2018-06-10Bump miniconda to 4.5.4. (#8435)健美猞猁2-0/+2
2018-06-09py-projectq: Added new package and fixed its dependency py-pybind11 (#8378)toffer932-0/+69
* py-pybind11: Additionally install python extensions e.g. run python setup * py-projectq: Added new package for quantum computing * py-projectq: corrected typos * edited flake8 incompatibilities * additional flake8 faults * changes according to suggestions * flake8 errors fixed * typo and missing environment variable set * py-pybind11:added setup_environemt * py-projectq:changed version according to request * flake8 correction * py-pybind11:changed to setup_py and removed noop * py-projectq:removed dependency and changed type of py-pytest dependency * py-pybind11: flake8 error corrected * py-projectq: Small error correction
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