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* py-macs2: add version 2.2.7.1 and support python@3.10:
The tarball from PyPi includes the Cythonized C files. The tarball from
github does not. Remove the Cythonized C files from the source so that
they are rebuilt with the Spack Python/Cython combination. This is
necessary for python-3.10 but make sense for other combinations as well.
* Edits based on review
- set python version constraint on version 2.2.4
- removed all python-2 versions and related constraints.
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* py-xxhash: fix xxhash dependency
The dependency should be xxhash@0.8.0:.
* Add version 3.2.0
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Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
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* Add depends_on("mpi") to fix missing <mpi.h>
Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
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- add python dependency
- add perl dependency
- set python and perl interpreters in scripts
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- stringtie uses internal samtools so remove dependency on samtools
- add dependency for zlib
- use make release target to get correct flags
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* Add package file for xtb and py-xtb
* Retain maintainers from PythonPackage
* Update package files
- use extends("python") instead of tampering with PYTHONPATH
- use PyPI for downloading sdist of py-xtb
- add simple-dftd3 0.7.0
- add dftd4 3.5.0
- remove --wrap-mode=nodownload from toml-f
* Remove logic for download URL
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With this change we get the invariant that `mirror.fetch_url` and
`mirror.push_url` return valid URLs, even when the backing config
file is actually using (relative) paths with potentially `$spack` and
`$env` like variables.
Secondly it avoids expanding mirror path / URLs too early,
so if I say `spack mirror add name ./path`, it stays `./path` in my
config. When it's retrieved through MirrorCollection() we
exand it to say `file://<env dir>/path` if `./path` was set in an
environment scope.
Thirdly, the interface is simplified for the relevant buildcache
commands, so it's more like `git push`:
```
spack buildcache create [mirror] [specs...]
```
`mirror` is either a mirror name, a path, or a URL.
Resolving the relevant mirror goes as follows:
- If it contains either / or \ it is used as an anonymous mirror with
path or url.
- Otherwise, it's interpreted as a named mirror, which must exist.
This helps to guard against typos, e.g. typing `my-mirror` when there
is no such named mirror now errors with:
```
$ spack -e . buildcache create my-mirror
==> Error: no mirror named "my-mirror". Did you mean ./my-mirror?
```
instead of creating a directory in the current working directory. I
think this is reasonable, as the alternative (requiring that a local dir
exists) feels a bit pendantic in the general case -- spack is happy to
create the build cache dir when needed, saving a `mkdir`.
The old (now deprecated) format will still be available in Spack 0.20,
but is scheduled to be removed in 0.21:
```
spack buildcache create (--directory | --mirror-url | --mirror-name) [specs...]
```
This PR also touches `tmp_scope` in tests, because it didn't really
work for me, since spack fixes the possible --scope values once and
for all across tests, so tests failed when run out of order.
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This reverts commit 4e63d92bc927aeb5380bdc48500abda4cda4b5bd.
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Packages that use docbook-xml may specify a specific entity version.
When this is specified as a version constraint in the package recipe it
will cause problems when using `unify = True` in a Spack environment, as
there could be multiple versions of docbook-xml in the spec. In
practice, any entity version should work with any other version and
everything should work with the latest version. This PR maps all Spack
docbook-xml entity versions to the docbook-xml version in the spec.
Ideally, the version in the spec would be the latest version. With this
PR, even if a package specifies an older entity version, it will map
to the entity version (latest) in the spec. This means that there can be one
docbook-xml version in a Spack environment spec and packages requesting
older entity versions will still work.
To help facilitate this, docbook-xml version constraints for packages
that have them have been removed. Those packages are dbus and gtk-doc.
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Since legit regular expressions are matched, do not pass string=True
to the filter
Refs #34897
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A few new versions of harbuzz, but just jumping to the last non-6 version as preferred.
No build system changes:
- within 5 series: https://github.com/harfbuzz/harfbuzz/compare/5.1.0...5.3.1
- from 5 to 6: https://github.com/harfbuzz/harfbuzz/compare/5.3.1...6.0.0
The 5 series fixes a build issue for aarch64, https://github.com/harfbuzz/harfbuzz/issues/3768.
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This allows client packages like UPC++ to display more precise version
information when their GASNet dependency was fetched from git.
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What's in AOCL 4.0:
1. amdblis
LPGEMM variants with post-ops support
AMD "Zen4" support for BLIS
2. amdlibflame
Upgrade to LAPACK 3.10.1 specification
Improvements in a few more variants of SVD and Eigen Value routines
Multithread support enabled for selected APIs
3. amdfftw
AVX-512 enablement of DFT kernels
AVX-512 optimization of copy and transpose routines
5. amdlibm
Black & Scholes support (logf, expf, erff, both scalar and vector)
AVX-512 variants of vector functions
6. aocl-sparse
New Iterative Solver APIs
AVX-512 support for SPMV API
7. amdscalapack
Upgrade to Netlib ScaLAPACK 2.2.0
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
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- v1.5.0
- v1.6.0
- v1.7.0
- v1.7.1
- v1.7.2
- v1.7.3
- v1.7.4
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Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4.4.0 to 4.5.0.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](https://github.com/actions/setup-python/compare/5ccb29d8773c3f3f653e1705f474dfaa8a06a912...d27e3f3d7c64b4bbf8e4abfb9b63b83e846e0435)
---
updated-dependencies:
- dependency-name: actions/setup-python
dependency-type: direct:production
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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Co-authored-by: sxs-bot <sxs-bot@users.noreply.github.com>
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* py-annoy: add 1.17.1
* add version specifier on dependency package
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Sometimes I just want to know how many packages of a certain type there are.
- [x] add `--count` option to `spack list` that output the number of packages that
*would* be listed.
```console
> spack list --count
6864
> spack list --count py-
2040
> spack list --count r-
1162
```
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Refactor Spack's spec syntax parsing to handle Windows style paths
Amend unit tests to reflect this updated behavior.
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* enable mumps solver in amesos2 if variant is set for trilinos
* fix formatting
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* Add packages
* Style
* Respond to comments
* Change conflct dep type
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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(#34901)
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* paraview: add `rocm` variant
This conflicts with CUDA and requires at least ParaView 5.11.0. More
dependencies are also needed.
* E4S: Add ParaView for ROCm and CUDA stacks
* DAV SDK: Update ParaView version and GPU variants
* Verify using hipcc vs amdclang++ for newer hip
Co-authored-by: Ben Boeckel <ben.boeckel@kitware.com>
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* adding 1st version of py-strawberryfields
* py-strawberryfields: minor edit
* added backbone for 4x new SF dependencies
* edits to SF and its 4x new deps
* added all deps for SF
* added one version to py-lark-parser
* py-quantum-xir with tarball from github
* Update var/spack/repos/builtin/packages/py-strawberryfields/package.py
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
* updated version for py-quantum-xir : pypy fixed
* py-pennylane: added pythonpackage.maintainers, too
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
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Currently, all of the replacements in `spack.util.path.replacements()` get evaluated for
each replacement. This makes it easy to get bootstrap issues, because config is used
very early on in Spack.
Right now, if I run `test_autotools_gnuconfig_replacement_no_gnuconfig` on my M1 mac, I
get the circular reference error below. This fixes the issue by making all of the path
replacements lazy lambdas.
As a bonus, this cleans up the way we do substitution for `$env` -- it's consistent with
other substitutions now.
- [x] make all path `replacements()` lazy
- [x] clean up handling of `$env`
```console
> spack unit-test -k test_autotools_gnuconfig_replacement_no_gnuconfig
...
==> [2022-12-31-15:44:21.771459] Error: AttributeError:
The 'autotools-config-replacement' package cannot find an attribute while trying to build from sources. This might be due to a change in Spack's package format to support multiple build-systems for a single package. You can fix this by updating the build recipe, and you can also report the issue as a bug. More information at https://spack.readthedocs.io/en/latest/packaging_guide.html#installation-procedure
/Users/gamblin2/src/spack/lib/spack/spack/package_base.py:1332, in prefix:
1330 @property
1331 def prefix(self):
>> 1332 """Get the prefix into which this package should be installed."""
1333 return self.spec.prefix
Traceback (most recent call last):
File "/Users/gamblin2/src/spack/lib/spack/spack/build_environment.py", line 1030, in _setup_pkg_and_run
kwargs["env_modifications"] = setup_package(
^^^^^^^^^^^^^^
File "/Users/gamblin2/src/spack/lib/spack/spack/build_environment.py", line 757, in setup_package
set_module_variables_for_package(pkg)
File "/Users/gamblin2/src/spack/lib/spack/spack/build_environment.py", line 596, in set_module_variables_for_package
m.std_cmake_args = spack.build_systems.cmake.CMakeBuilder.std_args(pkg)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/gamblin2/src/spack/lib/spack/spack/build_systems/cmake.py", line 241, in std_args
define("CMAKE_INSTALL_PREFIX", pkg.prefix),
^^^^^^^^^^
File "/Users/gamblin2/src/spack/lib/spack/spack/package_base.py", line 1333, in prefix
return self.spec.prefix
^^^^^^^^^^^^^^^^
File "/Users/gamblin2/src/spack/lib/spack/spack/spec.py", line 1710, in prefix
self.prefix = spack.store.layout.path_for_spec(self)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/gamblin2/src/spack/lib/spack/spack/directory_layout.py", line 336, in path_for_spec
path = self.relative_path_for_spec(spec)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/gamblin2/src/spack/lib/spack/spack/directory_layout.py", line 106, in relative_path_for_spec
projection = spack.projections.get_projection(self.projections, spec)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/gamblin2/src/spack/lib/spack/spack/projections.py", line 13, in get_projection
if spec.satisfies(spec_like, strict=True):
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/gamblin2/src/spack/lib/spack/spack/spec.py", line 3642, in satisfies
if not self.virtual and other.virtual:
^^^^^^^^^^^^
File "/Users/gamblin2/src/spack/lib/spack/spack/spec.py", line 1622, in virtual
return spack.repo.path.is_virtual(self.name)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/gamblin2/src/spack/lib/spack/spack/repo.py", line 890, in is_virtual
return have_name and pkg_name in self.provider_index
^^^^^^^^^^^^^^^^^^^
File "/Users/gamblin2/src/spack/lib/spack/spack/repo.py", line 770, in provider_index
self._provider_index.merge(repo.provider_index)
^^^^^^^^^^^^^^^^^^^
File "/Users/gamblin2/src/spack/lib/spack/spack/repo.py", line 1096, in provider_index
return self.index["providers"]
~~~~~~~~~~^^^^^^^^^^^^^
File "/Users/gamblin2/src/spack/lib/spack/spack/repo.py", line 592, in __getitem__
self._build_all_indexes()
File "/Users/gamblin2/src/spack/lib/spack/spack/repo.py", line 607, in _build_all_indexes
self.indexes[name] = self._build_index(name, indexer)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/gamblin2/src/spack/lib/spack/spack/repo.py", line 616, in _build_index
index_mtime = self.cache.mtime(cache_filename)
^^^^^^^^^^^^^^^^
File "/Users/gamblin2/src/spack/lib/spack/llnl/util/lang.py", line 826, in __getattr__
return getattr(self.instance, name)
^^^^^^^^^^^^^
File "/Users/gamblin2/src/spack/lib/spack/llnl/util/lang.py", line 825, in __getattr__
raise AttributeError()
AttributeError
```
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