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2017-03-24Add cuda support for gromacs. (#3527)健美猫1-2/+7
2017-03-23Add release info for git v2.12.1 (#3532)George Hartzell1-0/+5
Add info for git and git-manpages. Built/tested on CentOS7.
2017-03-23Add env vars for Intel VTune Amplifier (#3531)Adam J. Stewart2-10/+10
* Add env vars for Intel VTune Amplifier * Flake8 fix
2017-03-23Add DejaGnu package (#3518)Adam J. Stewart1-0/+39
2017-03-23Add Expect package (#3517)Adam J. Stewart5-5/+113
* Add Expect package * Ignore patches during flake8 tests for package.py files * Remove controversial changes
2017-03-23Only configure requested lammps features (#3526)Adam J. Stewart1-8/+7
* Only configure requested lammps features * Run configure from root and make from src
2017-03-22Add patch to fix xcb-proto make check (#3520)Adam J. Stewart2-1/+53
2017-03-22Open MPI: add new packages (#3519)Howard Pritchard1-1/+5
there were various updated packages, both for the 2.x, 2.0.x, and 1.10.x release branches of Open MPI. Signed-off-by: Howard Pritchard <howardp@lanl.gov> (cherry picked from commit 3b671935783fc3af76dc642a54461c2f02ab8ebf)
2017-03-22configure vtk with external hdf5 and netcdf packages (#3504)Jeffrey Salmond1-0/+8
* configure vtk with external hdf5 and netcdf packages * remove ~mpi constraints from hdf5 and netcdf
2017-03-22llvm: Install utilities into libexec (#3516)Erik Schnetter1-1/+1
2017-03-22Update googletest (#3514)Jimmy Tang1-0/+2
2017-03-21patch readline to fix ipython seg fault (#3512)Gregory Lee2-0/+93
2017-03-21Convert gettext to AutotoolsPackage (#3510)Adam J. Stewart1-7/+6
2017-03-21Fix for `find --explicit` #3374 (#3492)George Hartzell1-1/+1
This fixes the problem described in #3374, which describes `spack find` ignore explicit/implicit. I believe that this was broken in #2626. This restores the behavior of implicit/explicit for me. I believe that it does not screw anything else up, but ....
2017-03-21Convert isl to AutotoolsPackage (#3507)Adam J. Stewart1-10/+10
2017-03-21Add recommended patches to mpfr package (#3506)Adam J. Stewart3-1/+179
2017-03-21Replacing failing git clone by valid url (#3505)Kim Serradell1-6/+5
* Replacing failing git clone by valid url * Moving to previous version package (0.163) * Removing automake and autoconf dependencies and adding url_list to pick up newer versions * Corrected typo * Reorder versions and removed libtool
2017-03-21Add package openfst. (#3324)健美猫1-0/+54
2017-03-20llvm: Don’t copy “prefix/bin” into “prefix” during install (#3460)Erik Schnetter1-2/+1
2017-03-20Fix: setuptools is a runtime dependency for pudb (#3502)Adam J. Stewart1-4/+7
2017-03-20Add latest version of binutils (#3500)Adam J. Stewart1-8/+8
2017-03-20Update leveldb to 1.20 (#3441)Michael Kuhn1-4/+21
2017-03-20gasnet: Update to 1.28.2 (#3496)Erik Schnetter1-0/+1
2017-03-20cereal: Update to 1.2.2 (#3499)Erik Schnetter4-16/+32
2017-03-20jemalloc: Update to 4.5.0 (#3497)Erik Schnetter1-0/+1
2017-03-20py-yt: Update to 3.3.5 (#3498)Erik Schnetter1-0/+2
2017-03-20Improve output for compiler commands (#3480)scheibelp2-1/+14
* Order listed compiler sections "spack compiler list" output compiler sections in an arbitrary order. With this commit compiler sections are ordered primarily by compiler name and then by operating system and target. * Compiler search lists config files with compilers If a compiler entry is already defined in a configuration file that the user does not know about, they may be confused when that compiler is not added by "spack compiler find". This commit adds a message at the end of "spack compiler find" to inform the user of the locations of all config files where compilers are defined.
2017-03-20Fix issue with config.guess patching when the overwritten config.guess did ↵Matthew LeGendre1-9/+5
not have write permissions. (#3494)
2017-03-20fftw: Update to 3.3.6-pl1 (#3495)Erik Schnetter1-0/+1
2017-03-19Add ffmpeg package. (#3470)健美猫1-0/+47
2017-03-19Substitue ftp:// with http:// (#3491)健美猫1-1/+1
2017-03-19Add new version for intel package: 16.0.4 17.0.2 . (#3490)健美猫1-7/+12
2017-03-18Use byte-encoded UTF-8 for sourced environment in Python 2 (#3489)Todd Gamblin3-9/+52
- Fixes recurring errors on develop with unicode commit characters. - still Python3-proof: python3 will use str instead of bytestrings.
2017-03-18hdf5: Clean up building self-tests (#3483)Erik Schnetter1-9/+5
* hdf5: Clean up building self-tests * hdf5: Clean up running self-tests
2017-03-18Add missing dependencies to gawk (#3481)Adam J. Stewart4-6/+55
* Add missing dependencies to gawk * Fix make check * Add mawk packages and awk virtual dependency * Use mawk instead of gawk to build ncurses * Rearrange order of patches and dependencies
2017-03-18Fix deptype of various dependencies on Python packages (#3486)Adam J. Stewart20-32/+34
2017-03-18Adding new packages: py-argparse and py-importlib (#3488)Javier2-0/+72
2017-03-17setuptools is a runtime dependency of virtualenv (#3485)Adam J. Stewart1-5/+10
2017-03-17julia: Create cacert directory manually to ensure correct permissions (#3482)Erik Schnetter1-1/+3
2017-03-17Adding new package: py-future (#3401)Javier1-0/+39
* Adding new package: py-future * Commenting out deps needed when installing python@2.6
2017-03-17Don't use @system in packages.yaml (#3472)Adam J. Stewart3-73/+19
2017-03-17Add package for ESMF (#2831)Adam J. Stewart1-0/+253
* Add package for ESMF * Apparently mvapich2 is supported?
2017-03-17Add version constraints to VTK patch (#3357)Adam J. Stewart1-44/+41
2017-03-17hpx5: Convert to AutotoolsPackage, several updates (#3456)Erik Schnetter1-22/+78
* hpx5: Convert to AutotoolsPackage, several updates - convert to AutotoolsPackage - add several variants - add several dependencies - add new version 4.0.0 - don’t set compiler flags explicitly * hpx5: Don’t import os * hpx5: Clean up configure arguments * hpx5: Correct libffi configure declaration Also add new variant “+instrumentation”. * hpx5: Correct CUDA, MPI, OpenCL configuration * hpx5: Use built-in libffi Spack’s libffi installs its headers in a strange place, and hpx5 can’t pick them up.
2017-03-17libpciaccess: Convert to AutotoolsPackage, remove Darwin work-around (#3459)Erik Schnetter5-16/+8
* libpciaccess: Convert to AutotoolsPackage, remove Darwin work-around Other packages that depend on libpciaccess can do so via a conditional dependency (via a variant); we don’t need a dummy package for Darwin any more. * Disable libpciaccess dependency on non-Darwin platforms * hwloc: Remove direct dependency on libpciaccess
2017-03-16Add packages libbson and libmongoc (#3440)Michael Kuhn2-0/+86
2017-03-16simulationio: New package (#3422)Erik Schnetter1-0/+62
* simulationio: New package * simulationio: Rename development version to “develop” * simulationio: Try to make flake8 happy * simulationio: Correct flake8 error * simulationio: Extend Python * simulationio: Remove unused imports
2017-03-16Add latest version of NCO (#3469)Adam J. Stewart1-1/+2
2017-03-16Py keras extension (#3468)Brian Van Essen3-0/+51
* Added support for building Theano with GPU support. Added a package for the libgpuarry libary needed for Theano. * Added dependency on py-pexpect package which ipython requires.
2017-03-16Detect when OS updates affect compiler selection (#3410)scheibelp3-21/+77
Fixes #1476 Concretization uses compilers defined in config files and if those are not available defaults to searching typical paths where the detected operating system would have a compiler. If there is an OS update, the detected OS can change; in this case all compilers defined in the config files would no longer match (because they would be associated with the previous OS version). The error message in this case was too vague. This commit adds logic for detecting when it is likely that the OS has been updated (in particular when that affects compiler concretization) and improves the information provided to the user in the error message.
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