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* cuda: New version 10.1.243
Adds CUDA 10.1.243. The installer command-line arguments have slightly
changed, hence in the install method the version needs to be inspected
in order to give the correct arguments for the new installer.
* cuda: Combine common command-line arguments
The CUDA 10.1+ installer has slightly different command-line arguments
than previous versions. Keep the common parts together and only split
where they are different.
* Make flake8 happy
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* create new package py-atropos
* remove whitespace
* make tqdm and pysam dependencies optional, exposed as variants
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CD is hard.
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The build instructions I cloned from did not work ;)
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Fix docker build for packages.spack.io
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* Fix CD: Packages Service First
Build the packages.spack.io service images first, so they are
guaranteed to be pushed even if further images fail to build.
Fix the query to the `spack` script executed in later builds.
* CD: Remove Spack Images
Now done on Dockerhub.
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* update bbmap
* remove one extra comment line
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pkgconfig is the virtual dependency, pkg-config is an implementation.
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* update py-bokeh: new version & dependencies
* Revert "update py-bokeh: new version & dependencies"
This reverts commit 5e191a0b20a89f09630b4d223a28b19db715603f.
* update py-bokeh: new version & dependencies
* trigger travis-ci
* adjust python dependency-type to br
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* update py-bokeh: new version & dependencies
* Revert "update py-bokeh: new version & dependencies"
This reverts commit 5e191a0b20a89f09630b4d223a28b19db715603f.
* new package: py-fsspec: add package.py
* trigger travis-ci
* adjust python dependency-type to br
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* Update paraview
* Paraview 5.6.2 provides only .xz (no .gz)
* Add list_url and list_depth
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This is similar to #10191. The Ubuntu package for clang 8.0.0 displays
a very unusual version string, and we need this new regex to detect it
as just 8.0.0
Unit test have been complemented by the output that was failing
detection.
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Add the HTTP header `Access-Control-Allow-Origin: *` for our NGINX
service that is serving static JSON content on
https://spack.packages.io .
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* CGNS: Add setting of RPATH on Darwin
This should go in the CGNS CMakeLists.txt, but it isn't there yet and won't be in previous versions, so best to handle it here.
If building on darwin/MacOSX, need to set the RPATH so applications can find shared library correctly.
* Restrict MACOSX_RPATH setting
This has now been added to the CGNS distribution, so the setting of `CMAKE_MACOSX_RPATH` should be restricted to current and previous releases and not upcoming releases.
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* new package: py-iniparse
* add git version supporting python3
* redo python dependency
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* new package: py-configojb
* add version 4.7.2
* improve dependencies
* fix url for versions > 5.0.0
* Update var/spack/repos/builtin/packages/py-configobj/package.py
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/py-configobj/package.py
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
* use format to create url strings
* fix typo
* improve style
* Update var/spack/repos/builtin/packages/py-configobj/package.py
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
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* adding checksum for singularity 3.4, adding dep for shadow
* make v3.4 a TODO for now -- needs cryptsetup package first
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* Fix PyQt installation
* Switch dependency type
* Replace SIP dependency with resource
* Relax py-pyqt4 Qt dependency
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(#12737)
* py-gpaw: Fixing missing numpy include path, adding newer version of py-gpaw and fixing a bug with libxc.c in older py-gpaw
* py-gpaw: Fix Python and ASE version dependencies
- GPAW 19.8.1 requires Python 3.x, add dependency on python@3.5:
- GPAW releases are associated with a corresponding ASE release, add
matching ASE version dependencies.
* py-gpaw: Enable the scalapack variant by default
GPAW installation instructions say scalapack is optional but "highly
recommended". Thus enable it by default.
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* add new cutadapt release 2.5, and adjust dependencies conditional on version
* use https, not ssh, for git url
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
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* update py-xopen (add 0.8.2 checksum)
* refine version specific dependencies
add py-bz2file, which needs to be created
* create py-bz2file
* Revert "refine version specific dependencies"
This reverts commit 70649da98851fefb2f936ca99a012fe6bef07b70.
* Revert "update py-xopen (add 0.8.2 checksum)"
This reverts commit 7400f44caa6e98419eb4bc3107704b91e8a2018b.
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* update py-xopen (add 0.8.2 checksum)
* refine version specific dependencies
add py-bz2file, which needs to be created
* py-bz2file needed when built with python 2.7
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
* space after comma
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* add new package py-dnaio
* provide git url with https, not ssh, protocol
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
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- Fix trailing whitespace missed by the bug described in #12755.
- Fix other style issues that have crept in over time (this can happen
when flake8 adds new checks with new versions)
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E501 (line too long) exemptions are probably our most common ones -- we
add them for directives, URLs, hashes, etc. in packages. But we
currently add them even when a line *doesn't* need them, which can mask
trailing whitespace errors.
This changes `spack flake8` so that it will only add E501 exemptions if
the line is *actually* too long.
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
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5.0 (#12718)
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and making Fortran an option that can be disabled. Also added
support for the POSIX I/O wrapper and OMPT for OpenMP.
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There are problems with libunwind for arm and trying to use it with mesa.
See for example:
https://github.com/grate-driver/mesa/issues/6
disabling use of libunwind for arm, allows the package to be built
Signed-off-by: Howard Pritchard <hppritcha@gmail.com>
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Apply configure options to skip manpage generation
and test builds for both wide and non-wide builts.
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This way luarocks does not attempt to pull stuff from the internet.
Fix #3909
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- Use of symbol testing macro requires explicit include()
- CMake policies are not version-portable and the support has to queried
based on CMake version
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Signed-off-by: Vanessa Sochat <vsochat@stanford.edu>
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Adding a UPC++ spack package pointing to the default 2019.3.2 UPC++
version, and allowing to build UPC++ with the experimental CUDA variant.
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* openspeedshop: fixed build on arm.
* remove patch comment.
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* libpeas@1.22.0: new package
* libpeas: note more build dependencies
Build and link dependencies were obtained through a combination of
examining the `config.log` file from `configure` and looking at the
pkg-config files of `libpeas`.
* libpeas: add search path for GIR/typelib files
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* Use spec.architecture.target insted of platform.
* remove default in simd variant value.
simd variant change to archtecture independent values.
* Add check simd values.
* rewrite check simd values.
* * flake8
* change aarch64 to arm (neon support only 32 bit arm.)
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* corrected catalyst package for aarch64 targets
* corrected syntax
* corrected undefined variable
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* textparser: new package
* textparser: use 'parallel = False'
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