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2019-09-16Allow build to proceed with failed compiler lib detection (#12756)Adam J. Stewart1-0/+4
Fixes #12732 Fixes #12767 c22a145 added automatic detection and RPATHing of compiler libraries to Spack builds. However, in cases where the parsing/detection logic fails this was terminating the build. This makes the compiler library detection "best-effort" and reports an issue when the detection fails rather than terminating the build.
2019-09-16Quote shell variable values (#12759)Adam J. Stewart1-2/+2
This updates logic which sets shell variables to quote the values, which is necessary when the value contains a space (e.g. PATH).
2019-09-16Add py-pycbc package (#12823)Adam J. Stewart1-0/+40
2019-09-16Add py-astropy 2.0.14 (#12816)Adam J. Stewart1-14/+42
2019-09-16Add py-beautifulsoup4 4.8.0 (#12815)Adam J. Stewart1-1/+3
2019-09-16Add py-mpld3 package (#12822)Adam J. Stewart1-0/+21
2019-09-16Add py-asdf package (#12817)Adam J. Stewart1-0/+26
2019-09-16Add py-bintrees package (#12818)Adam J. Stewart1-0/+18
2019-09-16Add py-lscsoft-glue package (#12821)Adam J. Stewart1-0/+23
2019-09-16Add py-jplephem package (#12819)Adam J. Stewart1-0/+19
2019-09-16Add py-ligo-segments package (#12820)Adam J. Stewart1-0/+18
2019-09-16Add py-pyopenssl package (#12824)Adam J. Stewart1-0/+24
2019-09-16Add py-semantic-version package (#12825)Adam J. Stewart1-0/+20
2019-09-16Add py-sortedcontainers package (#12826)Adam J. Stewart1-0/+18
2019-09-16Add py-weave package (#12828)Adam J. Stewart1-0/+24
2019-09-16Add py-soupsieve package (#12827)Adam J. Stewart1-0/+18
2019-09-16Relax Python version constraints on py-html5lib (#12811)Adam J. Stewart1-2/+2
2019-09-16xdmf3: new package (#12778)Chuck Atkins1-0/+44
2019-09-14qt: Fix build with GCC9 for version 4 (#12832)Ruben Di Battista2-0/+68
* qt: Fix build w/ GCC9 for @4: * qt: Fix patch filename and qt version * Fix typo in patch name
2019-09-14flang: build on arm. (#12808)Toyohisa Kameyama1-0/+2
2019-09-13Fixes identified in ecp facilities hackathon fixes:Scott Wittenburg4-33/+21
- improve mirror git repo management - minio s3 implementation needs endpoint_url - Remove image key from rebuild-index job - Remove image, rely on tags instead
2019-09-13Implement an optional compiler bootstrapping phaseScott Wittenburg10-368/+711
2019-09-13Remove CombinatorialSpecSet in favor of environments + stacksScott Wittenburg10-721/+83
2019-09-13Add pre-ci job generation for a multi-repo setupScott Wittenburg2-0/+103
2019-09-13Refactor release-jobs cmd based on use of environments (no docker either)Scott Wittenburg4-310/+193
2019-09-13Add schema for new gitlab-ci and cdash additions to environmentScott Wittenburg4-0/+220
2019-09-13py-bleach package: add version 3.1.0 (#12814)Adam J. Stewart1-4/+5
2019-09-13py-cython package: fix --test (#12813)Adam J. Stewart1-1/+1
Fix bug in string conversion of "make_jobs"
2019-09-13py-emcee package: add version 2.2.1 (#12812)Adam J. Stewart1-1/+2
2019-09-13wcslib package: add version 6.4 (#12810)Adam J. Stewart1-1/+2
2019-09-13Add diamond dependencyGlenn P Johnson1-0/+1
2019-09-13Update braker packageGlenn P Johnson1-6/+33
- add version 2.1.4 - change url to github - add perl dependencies - new version has a new source layout - filter shebang to use spack perl
2019-09-13Fixes for augustus packageGlenn P Johnson1-13/+23
- add missing perl dependency - only filter Makefile if referred to dependency is in the spec - rewrite the shebang line of scripts to use spack perl - remove tabix dependency as tabix and bgzip are part of htslib
2019-09-13Update genemark-et packageGlenn P Johnson1-1/+19
- add version 4.46 - add missing perl dependencies - new version has different source layout - filter shebang to use spack perl
2019-09-13New package: py-pykwalify (#12540)Sinan1-0/+28
2019-09-13preCICE: added versions 1.6.0 and 1.6.1 (#12809)Frédéric Simonis1-0/+2
2019-09-13diamond: added version 0.9.25 (#12805)Glenn Johnson1-0/+1
2019-09-12New package: py-ruamel-yaml (#12543)Sinan1-0/+29
2019-09-12Singularity package: add version 3.4.0 (#12785)Owen Solberg2-3/+22
This version in combination with the included patch can install without root.
2019-09-12New package: cryptsetup (#12762)Owen Solberg2-0/+60
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2019-09-12add compilation option to sqlite (#12794)Sinan1-0/+5
* add compilation option to sqlite * rename variant * fix bug * re-rename variant
2019-09-12Update legion gasnet config (#12523)ktsai72-12/+32
2019-09-12BUG: recursively load modules with tcsh (#12664)Tyler Reddy1-1/+6
* for tcsh and csh, spack load -r package should now correctly load recursively instead of only loading the target package without any dependencies
2019-09-12py-gpaw: Fixed broken fftw linking in newer versions of py-gpaw (#12795)Simo Tuomisto1-0/+2
2019-09-11fgsl: new version + fix for recent spack commit (#12790)brietzke1-0/+6
2019-09-11module parsing: make heuristic to get paths from modules more robust (#12693)Greg Becker2-36/+87
* module parsing: make heuristic to get paths from modules more robust * refactor module parsing
2019-09-11jsoncpp: new versions, support cxxstd variant. (#12780)Chris Green1-0/+20
2019-09-10create package popt (#12783)Owen Solberg1-0/+15
2019-09-10fix bug in p4est (don't use MPI spec if not compiling with MPI) (#12784)Jonas Lippuner1-5/+5
2019-09-10openmx: new package (#12768)Hironori-Yamaji1-0/+80
* openmx: new package * openmx: use copy method
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