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* Add 'extra_env' argument to Executable.__call__: this will be added
to the environment but does not affect whether the current
environment is reused. If 'env' is not set, then the current
environment is copied and the variables from 'extra_env' are added
to it.
* MakeExecutable can take a 'jobs_env' parameter that specifies the
name of an environment variable used to set the level of parallelism.
This is added to 'extra_env' (so does not affect whether the current
environment is reused).
* CMake-based Spack packages set 'jobs_env' when executing the 'test'
target for make and ninja (which does not use -j)
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* r-genomicalignments: new version
* r-genomicalignments: ending range for r3.4 dep
* r-genomicalignments: fix range
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* r-biomart: new version;
* r-biomart: ending range for r3.4 dep
* r-biomart: fix version range
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* r-deseq2: new version
* r-deseq2: fix r 3.4 dep range
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* Trying to package old AIDA
* Document the incompleteness
* Install the jars too
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* added py-picrust
* flake8 edits
* fixed boilerplate, added type='build', 'run'
* fixed errors
* added deps
* fixed error
* fixed numpy max version
* fixed future version
* fixed version issues
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actually AutoTools, not CMake. (#9110)
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* py-pymysql: new package
* added type build and run
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* openblas@0.3.1:0.3.2: patch CMake export bug
See https://github.com/xianyi/OpenBLAS/pull/1703.
* openblas@0.3.1: new version
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* New package: CODES simulation framework
* CODES: add comments
* CODES: remove -fi from extra autoreconf flags
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Update the version numbers and now depend on
the develop version of dyninst because of a
feature in openspeedshop depends on new code
in the dyninst develop tree. Without dyninst
develop, openspeedshop will not build.
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* py-matplotlib: Add patch to fix FreeType library detection
Adds patch to add $CPATH to locations searched for FreeType header file
Patch has been upstreamed:
https://github.com/matplotlib/matplotlib/pull/11457
* py-matplotlib: Add patch to fix FreeType library detection
* Make patch only apply to versin 2.2.2 (as already upstreamed)
* Fix flake8 format issue
* py-matplotlib: add range to freetype patch
* py-matplotlib: whitespace
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1. I presently get errors of the sort
==> Error: KeyError: 'No spec with name mpi in silo@4.10.2%gcc@8.1.0+fortran+mpi
[...]
$HOME/spack/var/spack/repos/builtin/packages/silo/package.py:84, in configure_args:
81 'FCFLAGS={0}'.format(self.compiler.pic_flag)]
82
83 if '+mpi' in self.spec:
>> 84 config_args.append('CC=%s' % self.spec['mpi'].mpicc)
85 config_args.append('CXX=%s' % self.spec['mpi'].mpicxx)
86 config_args.append('FC=%s' % self.spec['mpi'].mpifc)
without the extra explicit MPI dependency.
2. Silo uses zlib, so we should explicitly depend on it.
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- fix line wrapping in travis.yml to make parts more legible
- Travis can handle multi-line if statements if you use semicolos.
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Added SUNDIALS 3.1.2 and 4.0.0-dev.1 versions and relevant dependencies
(3.1.2 requires CMake 2.8.12). Updated all versions to use sha256 hashes.
Addressed issue specific to clang compiler on macOS.
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* Addition of py-filelock and first page of versions.
* Addition of setup.py patch for setuptools.
* flake8 failure fixes.
* Reduced url declaration to a single line.
* Correction to py-filelock to use distutils.
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* Suggest adding contents before the explanatory comment to avoid
issue #6534
* Mention that the license file may not need to be edited
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Consolidate prefix calculation logic for intel packages into the
IntelPackage class.
Add documentation on installing Intel packages with Spack an
(alternatively) adding them as external packages in Spack.
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Add variant 'nls' for native language support with default True.
The default inside binutils was always on, but this gives a way of
turning it off, if desired.
Adjust the dependencies. Flex is never used for a one-time build.
Bison and m4 should not be needed, except that prior to rev 2.30, gold
did not include its generated files, so bison is needed when +gold.
Drop configure option --enable-interwork. This option does not exist.
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Adds explicit python3 dependency for meson
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This PR includes the following changes:
* Added JDK 10
* Changed the JDK version numbers according to the consensus reached
in #2284
* Added spec['java'].home and spec['java'].libs, similar to #3367
(JDK and IcedTea)
* Added a check to prevent people from installing JDK on macOS
* Set CLASSPATH for packages depending on Java (JDK and IcedTea)
* Add TODO for extending virtual packages (not currently possible)
* Add TODO for adding Java dependents to views
* Add TODO for packages which extend multiple packages (e.g. Java
and Python)
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