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2020-08-09blaze: fix build error (#17954)darmac1-0/+1
2020-08-09KNEM and XPMEM support for UCX (#17215)Alex Margolin2-40/+39
* KNEM url updated Signed-off-by: Alex Margolin <alex.margolin@huawei.com> * Allow UCX to be built against KNEM and XPMEM Signed-off-by: Alex Margolin <alex.margolin@huawei.com>
2020-08-09dire: new package at v2.004 (#17749)Wouter Deconinck1-0/+39
Older versions do not compile correctly. New users should use 2.004, not any of the older versions. Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-09py-scikit-learn: added v0.23.2 (#17876)Adam J. Stewart1-1/+2
2020-08-09charliecloud: added v0.17 (#17855)Jordan Ogas1-2/+16
2020-08-09Fix cpio clang build error (#17963)Harmen Stoppels1-1/+7
undefined reference to '__muloti4', using the proposed fix from https://bugs.llvm.org/show_bug.cgi?id=16404
2020-08-09eospac: added support for fujitsu compiler (#17922)ketsubouchi2-0/+64
2020-08-09unifyfs: remove flatcc dependency and add spath (#17913)Cameron Stanavige1-1/+3
FlatCC has been removed from UnifyFS as a dependency on the develop branch and for future releases. spath is now an optional dependency for UnifyFS to normalize relative paths provided by the user.
2020-08-09r-rcppparallel: fix for fujitsu compiler (#17924)ketsubouchi2-0/+14
2020-08-09HEP versions update (#17927)vvolkl3-3/+5
* [whizard] bug fix for ~openloops * [lcio] new version * [gaudi] new version * [lcio] add delphes dependency for examples
2020-08-09pythia8: added v8302 and maintainer (#17931)Dr. Christian Tacke1-0/+3
2020-08-09hypre: added v2.19.0 (#17809)Rémi Lacroix1-0/+1
2020-08-09oneDNN: added v1.6 and v1.6.1 (#17822)Adam J. Stewart1-1/+3
2020-08-09py-azureml-sdk: add v1.11.0 (and deps) (#17939)Adam J. Stewart14-58/+134
2020-08-09py-netket: added new package at v2.1.1 (#17515)Sinan1-0/+38
Co-authored-by: Sinan81 <sbulut@3vgeomatics.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-09cub: added v1.9.10, fixed typo in url (#17942)Brian Van Essen1-1/+5
2020-08-09Replace [] with () in description (#17940)Glenn Johnson1-5/+7
The tcl module for r-dorng will fail to load due to the [] characters in the description. This happens for Tcl formatted modules loaded by Lmod at least. ``` module load r-dorng-1.7.1-gcc-9.2.0-wtq7bne Lmod has detected the following error: .../spack/share/spack/modules/linux-centos7-broadwell/r-dorng-1.7.1-gcc-9.2.0-wtq7bne:(r-dorng-1.7.1-gcc-9.2.0-wtq7bne): invalid command name "L'Ecuyer" ``` Split text for short and long descriptions.
2020-08-09PIL: add py-pillow 7.2.0 (#17933)Adam J. Stewart1-30/+31
2020-08-09llvm: added v10.0.1 (#17950)Sinan1-0/+1
Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
2020-08-09wcslib: added v7.3 (#17836)Adam J. Stewart1-1/+2
2020-08-09petsc: added v3.13.2,v3.13.3,v3.13.4 (#17957)Satish Balay1-0/+3
2020-08-09libimagequant: added new package at v2.12.6 (#17959)Adam J. Stewart1-0/+25
2020-08-09saws: added v0.1.1 (#17958)Satish Balay1-0/+3
2020-08-09mbedtls: fix min cmake version, added v2.16.7 (#17960)Mark W. Krentel1-1/+4
Mbedtls 2.16.x uses target_sources() from cmake >= 3.1.0
2020-08-09cassandra: fixed checksum for v3.11.6 (#17961)Daniel Topa1-1/+1
Signed-off-by: Daniel Topa <dantopa@gmail.com>
2020-08-08Add variants to petsc (#17218)Glenn Johnson1-27/+87
* Add variants to petsc This PR adds the follolwing variants to the petsc package - gmp - jpeg - libpng - giflib - mpfr - netcdf - pnetcdf (parallel-netcdf) - moab - eigen - random123 - exodusii - mstk - cgns - memkind - muparser - p4est - saws - libyaml - zstd * Fix flake8 errors * Additional changes to Petsc recipe This commit addresses the issues with dependencies that were brought up in the comments. There are also a few other enhancements. - the language of the new variant descriptions was changed to be more consistent with what was already in the recipe - an explicit '+mpi' was added to the depends_on('hypre...') directives - an explicit '+mpi' was added to the depends_on('trilinos...') directives - the run time error checking for '~mpi' was replaced with 'conflicts()' directives that will cause the install to fail sooner - additional variants that were 'parallel only' were added to the '~mpi' check * Set the '~mpi`' conflicts msg to a variable
2020-08-08new package: py-cmake (#17588)Sinan1-0/+20
* new package: py_cmake * sync cmake and py-cmake versions * new package: py_cmake * sync cmake and py-cmake versions * flake8, improve dependency specifics * replace template stuff with actual values Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
2020-08-08package/cmake: add versions 1.18.0 and 1.18.1 (#17945)Sinan0-0/+0
* package/cmake: add versions 1.18.0 and 1.18.1 * fix shasums Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
2020-08-07Feature/raja chai umpire update (#17665)Adrien Bernede4-8/+102
* Changing raja, chai, and umpire packages so all will compile with each other. * Need a CUDA version of CHAI when compiling with raja+cuda+chai * Updating checks for commit. * Adding comments explaining why chai+umpire tests were disabled * Reactivating tests for CHAI and Umpire * reordering versions * Unified handling of Cuda Arch * Adding latest versions * Unused/Untested: removed * Aesthetic and test mode in Chai * Unified handling of Cuda Arch * Using 'ON' consistently, instead of 'On' * Apply suggestions from code review Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Fix, suggestion and patch: Chai depends on RAJA, not the other way. Apply suggested master-main version mapping. Add Umpire version 3.0.0 and patch. Co-authored-by: Robert Blake <blake14@llnl.gov> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-07conduit: dont use cmake >= 3.18 because of FindHDF5 bug (#17937)eugeneswalker1-1/+1
2020-08-07New package - REDItools (#17703)Glenn Johnson6-0/+1042
* New package - REDItools This PR adds the REDItools package, along with a new package dependency, py-fisher. This contains a patch generated from the python 2to3 script as well as some other fixes. I am not sure if the project is ready to support python-3 yet but I submitted the other patches upstream. * Update var/spack/repos/builtin/packages/reditools/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-07py-inference-schema: add new package (#17912)Adam J. Stewart1-0/+33
2020-08-07Fujitsu compiler: Accept alphabet as version. (#17890)Tomoki, Karatsu2-7/+7
* Fujitsu compiler: Accept alphabet as version. * Fujitsu copiler: Updated test pattern.
2020-08-07gromacs: new version 2020.3; variant nosuffix and mkl support (#17908)g-mathias1-6/+38
* new version 2020.3; new variants nosuffix and fft; version selections for plumed * fixed too long lines * fixed whitespaces * revised fft interface according to @haampie 's suggestions Co-authored-by: lu64bag3 <gerald.mathias@lrz.de>
2020-08-06activeharmony: add version 4.6.0 (#17867)darmac2-4/+52
2020-08-06py-rasterio: add v1.1.5Adam J. Stewart1-6/+9
2020-08-06New package: ProfugusMC (#17914)Robert Pavel1-0/+24
Added spackage for profugusMC
2020-08-06hpctoolkit: fix commit hash for version 2020.08.03 (#17920)Mark W. Krentel1-1/+1
2020-08-06Wonton (package): Fix sha 256 sum for version (#17916)Rao Garimella1-1/+1
2020-08-06stacks (package): add version 2.53 (#17915)Justin S1-0/+1
2020-08-06isescan: new package at 1.7.2.1 (#16589)Justin S1-0/+71
* isescan: new package at 1.7.2.1 * isescan: update external program paths * isescan: use spack compiler
2020-08-06New Package Wonton (#17882)Rao Garimella1-0/+127
* new package Wonton * remove the flecsi variant because flecsi-sp does not have a spackage * fix url, clean up whitespaces * formatting * put in explicit else clauses for variants in CMake section because CMake's behavior is system-dependent Co-authored-by: Rao Garimella <rao@abyzou.lanl.gov>
2020-08-06Bazel: relax Java dependency (#17734)Adam J. Stewart1-11/+1
* Bazel: relax Java dependency * Flake8 fix
2020-08-06New package: HDFView (#17707)Julius-Plehn3-0/+64
* HDFView * adds support for version 3.1.1
2020-08-05bugfix: fix spack -V with releases/latest and shallow clones (#17884)Todd Gamblin1-2/+2
`spack -V` stopped working when we added the `releases/latest` tag to track the most recent release. It started just reporting the version, even on a `develop` checkout. We need to tell it to *only* search for tags that start with `v`, so that it will ignore `releases/latest`. `spack -V` also would print out unwanted git eror output on a shallow clone. - [x] add `--match 'v*'` to `git describe` arguments - [x] route error output to `os.devnull`
2020-08-05GPI-2 new package (#17875)Robert Mijakovic1-0/+79
* update version: intel packages daal, ipp, mkl-dnn, mkl, mpi, parallel-studio, pin, tbb and makes url parameter consistent and always use single quote. * Fixes a typo with one of the sha256 checksum.. * Adds version entries for new versions of Intel packages. * Adds hashes for new versions of Intel packages. * Adds missing hash of Intel compiler. * Adds the newest version of Intel MPI 2019.8. * Fixes hash for intel-parallel-studio and intel-tbb. * Fixes version number of Intel MPI. * Adds GPI-2 package. * Fixes flake8 noticed issues. * Second try to fix flake8 comment * Fixes some issues adamjstewart noticed. * Fixes package according to flake8 complains. * Fixes flake8 issue. * Renames next version to master and removes master. * Adds maintainer into gpi-2 and returns master branch for the git repository. Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2020-08-05Variant with fortran for likwid package (#17889)carlabguillen1-0/+16
* Option to build likwid with fortran interface * Removing white spaces * Flake8 conform
2020-08-05add depends_on('zlib', type='link') (#17887)h-denpo1-0/+1
2020-08-05bcache:add pkg-config to find blkid.h in linux-utils (#17888)darmac1-0/+1
2020-08-05remove hypre variant from mfem and all references to it (#17885)Greg Becker3-9/+3
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