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2022-07-12build(deps): bump actions/setup-python from 4.0.0 to 4.1.0 (#31526)dependabot[bot]4-19/+19
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4.0.0 to 4.1.0. - [Release notes](https://github.com/actions/setup-python/releases) - [Commits](https://github.com/actions/setup-python/compare/d09bd5e6005b175076f227b13d9730d56e9dcfcb...c4e89fac7e8767b327bbad6cb4d859eda999cf08) --- updated-dependencies: - dependency-name: actions/setup-python dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2022-07-12hpcviewer: add v2022.06 (#31532)Mark W. Krentel1-0/+4
2022-07-12Remove os.getcwd from function signature (#31480)Massimiliano Culpo1-3/+2
fixes #29730 This is also wrong since it binds the directory at the time of module import, rather than the one at the time of function call.
2022-07-12Sanitize ownership when extracting tarfiles (#31524)Jonathon Anderson1-3/+9
2022-07-11py-hatchling: add new packages, document new build backend (#31512)Adam J. Stewart3-2/+72
* py-hatchling: add new package, document new build backend * Minor doc changes Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com> Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-07-11glib: add 2.72.3 (#31516)Michael Kuhn1-0/+1
2022-07-11Fix for sanity check failure in spack upstream code: atmi, hip-rocclr (#31454)renjithravindrankannath2-7/+9
* Fix for sanity check failure in spack upstream code * Style check failure correction * Correction as per the review comments
2022-07-11Metall package: add v0.21 (#31482)Keita Iwabuchi1-0/+1
* Metall package: add dependency to GCC for build test * Package Metall: add v.017 * Package Metall: update the package file * Update var/spack/repos/builtin/packages/metall/package.py Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com> * Metall package: add v0.18 and v0.19 * Metall Package: add v0.20 * Metall package: add v0.21 Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
2022-07-11ports-of-call: new version 1.2.0, simplify (#31485)Richard Berger1-1/+2
2022-07-11[cppcodec] new package (#31506)miheer vaidya1-0/+20
2022-07-11py-mypy: add v0.961 (#31503)Adam J. Stewart1-1/+10
2022-07-11py-gpytorch: add v1.7.0 (#31504)Adam J. Stewart1-0/+4
2022-07-11py-numpy: add v1.23.1 (#31510)Adam J. Stewart1-0/+1
* py-numpy: add v1.23.1 * Remove packaging dep
2022-07-11py-torchgeo: add v0.3.0 (#31514)Adam J. Stewart1-45/+65
2022-07-11ucx: add 1.13.0 (#31517)Carlos Bederián1-0/+1
2022-07-11julia: fix patch (#31515)Michael Kuhn1-1/+1
2022-07-10man-db: Don't use DESTDIR (#31492)Harmen Stoppels1-7/+4
2022-07-08openssl: New version 1.1.1q (#31487)Erik Schnetter1-2/+4
2022-07-08py-setuptools: add v63.0.0 (#31444)Adam J. Stewart1-0/+1
2022-07-08vim: deprecate 9.0.0000, add 9.0.0045 (#31490)Harmen Stoppels1-1/+2
2022-07-07py-panaroo, py-edlib, and py-intbitset: new packages (#31452)Luke Diorio-Toth3-0/+78
2022-07-07Package/py phylophlan (#31422)Erin Newcomer1-0/+27
* py-phylophlan: new package * py-phyloseq: new package * py-phylophlan: style fix * py-phylophlan: fixed dependencies * py-phylophlan: style fix
2022-07-07OpenBabel: Make building with GUI an option (#31456)Tamara Dahlgren1-0/+3
2022-07-07Fix spack edit message when no editor installed (#31412)Cory Bloor2-1/+15
When no default editor is installed and no environment variable is set, which_string would return None and this would be passed to os.execv resulting in a TypeError. The message presented to the user would be: Error: execv: path should be string, bytes or os.PathLike, not NoneType This change checks that which_string has returned successfully before attempting to execute the result, resulting in a new error message: Error: No text editor found! Please set the VISUAL and/or EDITOR environment variable(s) to your preferred text editor. It's not strictly necessary, but I've also changed try_exec to catch all errors rather than just OSErrors. This would have provided slightly more context for the original error message.
2022-07-07[py-distributed] Add version 2022.2.1 (#31465)Stephen Sachs1-0/+5
2022-07-07py-pytorch-lightning: remove upper bounds on deps (#31443)Adam J. Stewart1-19/+10
2022-07-07mpas-model: Overwrite compiler args in Makefile (#31431)Stephen Sachs1-1/+20
Use 8 byte reals only when `precision=double` is set The pre-defined compilation targets do not follow the usual behavior of Makefiles. Compiler flags are set as strings (not Makefile variables) and as such are not able to be overridden by environment variables. This patch changes the behavior to the expected behavior of a Makefile such that `fflags` etc have the desired effect. Co-authored-by: Stephen Sachs <stesachs@amazon.com>
2022-07-07speexdsp: add pkgconfig dependency (#31455)Ryan Marcellino1-0/+1
2022-07-07py-tensorboard: install from wheel (#31445)Adam J. Stewart1-97/+15
2022-07-07py-rasterio: add v1.3.0 (#31457)Adam J. Stewart1-12/+17
2022-07-07libzmq: fix issue with newer GCC and master branch (#31468)Stephen Sachs1-4/+5
Co-authored-by: Stephen Sachs <stesachs@amazon.com>
2022-07-07py-torch: re-add headers/libs properties (#31446)Adam J. Stewart2-0/+32
2022-07-07py-torchgeo: tiff support required (#31447)Adam J. Stewart1-2/+2
2022-07-07Fix conditional dependencies for openCARP (#31478)Marie Houillon2-3/+3
2022-07-07Documentation: Add SourceforgePackage to the build systems docs (#31473)Tamara Dahlgren2-2/+58
2022-07-07[py-ipyparallel] setuptools.config.StaticModule moved (#31467)Stephen Sachs1-0/+1
* [py-ipyparallel] setuptools.config.StaticModule moved ... in py-setuptools@61 * [py-ipyparallel] setuptools fix only added to release 8.2.1 https://github.com/ipython/ipyparallel/pull/680 * [py-ipyparallel] Fix typo Co-authored-by: Stephen Sachs <stesachs@amazon.com>
2022-07-07removing feature bloat: monitor and analyzers (#31130)Vanessasaurus21-2192/+5
Signed-off-by: vsoch <vsoch@users.noreply.github.com> Co-authored-by: vsoch <vsoch@users.noreply.github.com>
2022-07-06libEnsemble: add v0.9.2 (#31471)Stephen Hudson1-1/+2
2022-07-06kokkos: New version 3.6.01 (#31462)Erik Schnetter1-0/+1
2022-07-06spiner: New version 1.5.1 (#31461)Erik Schnetter1-0/+2
2022-07-06pip bootstrap packages: add myself as maintainer (#31448)Adam J. Stewart3-0/+6
2022-07-06Minor typo fix in mfem's package (#31470)Kenny Weiss1-1/+1
Pointed out by @agcapps
2022-07-06Testing Bugfix: refactor clean --python-cache to support all (#31449)Tamara Dahlgren2-13/+63
There were two choices: 1) remove '-p' from '-a' or 2) allow monkeypatching the cleaning of the python cache since clean's test_function_calls isn't supposed to be actually cleaning anything. This commit supports the latter and adds a test case for `-p`.
2022-07-06amrex: add v22.07 (#31464)Weiqun Zhang1-1/+2
2022-07-06Add checksum for py-lazy-object-proxy 1.7.0 and 1.7.1 (#31435)iarspider1-1/+4
* Add checksum for py-lazy-object-proxy 1.7.0 and 1.7.1 * Update package.py
2022-07-06Add checksum for py-pylint 2.14.4; py-astroid 2.11.5, 2.11.6 (#31436)iarspider3-0/+8
* Add checksums for astroid 2.11.5 and 2.11.6 * Add checksum for py-pylint 2.14.4 * Update package.py * Add checksum for py-tomlkit 0.11.0
2022-07-06add recipe for improved-rdock (#31158)otsukay10-0/+576
* add recipe for improved-rdock * style: fix format * style: fix format again * Fix location of the directory * Fix copyright * Fix according to the reviewer's comments. * Revert "Fix according to the reviewer's comments." This reverts commit 4877877dafda4566a18a33c6ffef6e681b4da896. * Fix according to the reviewer's comments. * style: fix format * Update var/spack/repos/builtin/packages/improved-rdock/package.py Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com> Co-authored-by: Yuichi Otsuka <otsukay@riken.jp> Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-07-06readline: New version 8.1.2 (#31025)Erik Schnetter1-0/+1
2022-07-06Add pika 0.6.0 (#31458)Mikael Simberg1-0/+1
2022-07-05Bazel: new versions, patches, conflicts, and java version contraints (#31402)Adam J. Stewart10-47/+107
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