| Age | Commit message (Collapse) | Author | Files | Lines |
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Bumps [actions/checkout](https://github.com/actions/checkout) from 4.1.6 to 4.1.7.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](https://github.com/actions/checkout/compare/a5ac7e51b41094c92402da3b24376905380afc29...692973e3d937129bcbf40652eb9f2f61becf3332)
---
updated-dependencies:
- dependency-name: actions/checkout
dependency-type: direct:production
update-type: version-update:semver-patch
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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If an external happens to be a provider of anything, the solver would
set its weight to 0, meaning that it is most preferred, even if
packages.yaml config disagrees.
That was done so that `spack external find mpich` would be sufficent to
pick it up as mpi provider.
That may have made sense for mpi specifically, but doesn't make sense
for other virtuals. For example `glibc` provides iconv, and is an
external by design, but it's better to use libiconv as a separate
package as a provider.
Therefore, drop this rule, and instead let users add config:
```
mpi:
require: [mpich]
```
or
```
mpi:
buildable: false
```
which is well-documented.
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This change makes `spack external find --not-buildable` mark virtuals
provided by detected packages as non-buildable, so that it's sufficient
for users to let spack detect say mpich and have the concretizer pick it
up as mpi provider even when openmpi is "more preferred".
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Consistently with ArmPL@24:, the include directory for acfl@24:
has changed to include. The change wants to update to this change
and distinguish the include path for releases previous to 24.04
and the future ones
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* rocm-cmake: changed test format from old to new
* Rename cmake variable
* post-conflict resolution: remove remaining version check
---------
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
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Bumps [docker/login-action](https://github.com/docker/login-action) from 3.1.0 to 3.2.0.
- [Release notes](https://github.com/docker/login-action/releases)
- [Commits](https://github.com/docker/login-action/compare/e92390c5fb421da1463c202d546fed0ec5c39f20...0d4c9c5ea7693da7b068278f7b52bda2a190a446)
---
updated-dependencies:
- dependency-name: docker/login-action
dependency-type: direct:production
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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Bumps [actions/setup-python](https://github.com/actions/setup-python) from 5.1.0 to 5.1.1.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](https://github.com/actions/setup-python/compare/82c7e631bb3cdc910f68e0081d67478d79c6982d...39cd14951b08e74b54015e9e001cdefcf80e669f)
---
updated-dependencies:
- dependency-name: actions/setup-python
dependency-type: direct:production
update-type: version-update:semver-patch
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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* Use ROOT_LIBRARY_PATH and adjust other environment variables
* Accommodate versions older than ROOT 6.26
* Use os instead of pathlib
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* pumi: new test API
---------
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
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* Added Release 0.0.4 and 0.0.5
* Changed requirement for gotcha
use gotcha 1.0.5 for 0.0.2 and 0.0.3
* Combine gotcha 1.0.7 for master and develop
---------
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
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* rpp package - fix the add_tests build failure for 6.1 rel
* fix test build failure
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* py-janus: add v.0.7.0,v1.0.0
* Incorporating changes from review including:
https://github.com/spack/spack/pull/44520#pullrequestreview-2095028464
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Co-authored-by: github-actions[bot] <github-actions[bot]@users.noreply.github.com>
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* Mirror cpuinfo CI for msvc
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in case of inheritance the static tags prop may be updated multiple
times, and it turns out builder classes magically inherit from
traditional package classes
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While trying to build packages with the OneAPI compiler version 2024.1 I
ran into the following error, indicating that the compiler is unable to
find some necessary libraries:
```
/storage/Software/oneapi/2024.1/compiler/2024.1/bin/sycl-post-link: error
while loading shared libraries: libonnxruntime.1.12.22.721.so: cannot open
shared object file: No such file or directory
icpx: error: unable to execute command: No such file or directory
icpx: error: sycl-post-link command failed due to signal (use -v to see
invocation)
```
Indeed, `libonnxruntime.1.12.22.721.so` does come bundled with the
OneAPI compiler, but it is not available in the build environment by
default. In this commit, I update the custom environment created by
OneAPI to include the `lib/` directory in which these libraries reside
in the `LD_LIBRARY_PATH` environment variable.
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In my enthusiasm to add dfelibs to Spack, I didn't realise that the
unit tests of dfelibs use Boost and, as such, Boost is required as a
testing dependency.
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* octopus: old to new test API
* Minor simplifications and cleanup
---------
Co-authored-by: Tamara Dahlgren <dahlgren1@llnl.gov>
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* Add compatibility of sequoia with previous macOS versions
* Add compatibility of sequoia with previous macOS versions
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* git: add new patch-level versions
* git: deprecate older previous with broken git lfs
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Co-authored-by: Alberto Invernizzi <9337627+albestro@users.noreply.github.com>
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Originally if you had `x -> y -> z`, and an env with `x` in its speclist that is concretized but not installed, then `spack find -c y` would not show anything. This was intended: `spack find` has up-until-now only ever listed out installed specs (and `-c` was for adding a preamble section about roots).
This changes `spack find` so:
* `-c` makes it search through all concretized specs in the env (in a sense it is anticipated that a concretized environment would serve as a "speculative" DB and users may want to query it like they query the DB outside of envs)
* Adds a `-i/--install-status` option, equivalent to `-I` from `spack spec`
* Shows install status for either `-c` or `-i`
* As a side effect to prior point, `spack find -i` can now distinguish different installation states (upstream/external)
Examples:
```
$ spack find -r
==> In environment findtest
==> 1 root specs
- raja
==> 6 installed packages (not shown)
==> 12 concretized packages to be installed (not shown)
```
```
$ spack find
==> In environment findtest
==> 1 root specs
- raja
-- darwin-ventura-m1 / apple-clang@14.0.3 -----------------------
berkeley-db@18.1.40 bzip2@1.0.8 diffutils@3.10 gmake@4.4.1 gnuconfig@2022-09-17 libiconv@1.17
==> 6 installed packages
==> 12 concretized packages to be installed (show with `spack find -c`)
```
```
$ spack find -c
==> In environment findtest
==> 1 root specs
- raja
-- darwin-ventura-m1 / apple-clang@14.0.3 -----------------------
[+] berkeley-db@18.1.40 [+] bzip2@1.0.8 - cmake@3.29.4 [+] diffutils@3.10 [+] gmake@4.4.1 [+] libiconv@1.17 - nghttp2@1.62.0 - pkgconf@2.2.0 - readline@8.2
- blt@0.6.2 - camp@2024.02.1 - curl@8.7.1 - gdbm@1.23 [+] gnuconfig@2022-09-17 - ncurses@6.5 - perl@5.38.2 - raja@2024.02.2 - zlib-ng@2.1.6
==> 6 installed packages
==> 12 concretized packages to be installed
```
$ spack -E find
...
==> 82 installed packages
```
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* charmpp v8.0.0
---------
Co-authored-by: RMeli <RMeli@users.noreply.github.com>
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This fixture was introduced in #16429, and made
redundant in #39024
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(#45106)
and add a fixture to detect use of conflicting fixtures
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* petsc, py-petsc4py: add v3.21.3
* py-petsc4py: requires cython v3 since v3.20
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* environments.rst: go from simple to advanced
* improvements
* notes about activation
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* Add py-datasets version 2.20.0
* Add dependency requirements for version 2.20 + refactor
* Add missing tqdm and requests versions and to install latest py-datasets
* Add missing python requirements for 2.8.0 and 2.20.0
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* gtfsort: new rust package @0.2.2
---------
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
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Fix a bug where Spec.tree with cover=nodes reduces deptypes from all
in-edges, including from nodes not reachable from the root, which almost
always happens for concrete specs
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`Spec.__getitem__` queries dependent edges, which almost always point to
nodes outside the sub-dag considered. It should only ever look at edges
being traversed.
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* Also, fix a bug with use_repositories + import spack.pkg
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