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2022-03-21py-pyvcf: constrain py-setuptools to 0.57 (#29610)Glenn Johnson1-1/+1
This package can not use setuptools newer than 0.57 due to needing features removed in later versions of setuptools.
2022-03-21vecgeom: fix cuda arch (#29582)Seth R. Johnson1-25/+28
* vecgeom: fix cuda arch * vecgeom: change 'options' to 'args' * vecgeom: add spec to locals * vecgeom: suppress architecture specializations when cuda
2022-03-21r-sf: add v1.0.7 (#29625)Glenn Johnson1-0/+1
2022-03-21mariadb: add version 10.8.2 (#29586)Valentin Volkl1-1/+2
2022-03-21r-yaml: add v2.3.5 (#29628)Glenn Johnson1-0/+1
2022-03-21lcgenv: add new package (#29436)haralmha1-0/+20
2022-03-21Updated configure flags in newer versions of ipopt (#29445)Felix Liu1-12/+23
2022-03-21sparrow: add new package (#29291)David M. Rogers1-0/+85
2022-03-21config add: fix parsing of validator error to infer type from oneOf (#29475)Greg Becker2-4/+10
2022-03-21Barvinok: fix pet variant description, add maintainer (#29421)miheer vaidya1-1/+6
2022-03-21r-tinytex: add v0.37 (#29627)Glenn Johnson1-0/+1
2022-03-21geant4: Add external find support (#29642)Thomas Madlener1-0/+49
* geant4: Add external find support (partial) * Fix style * Fix style another time
2022-03-21r-terra: add v1.5-21 (#29626)Glenn Johnson1-0/+1
2022-03-21build(deps): bump docker/build-push-action from 2.9.0 to 2.10.0 (#29506)dependabot[bot]1-1/+1
Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 2.9.0 to 2.10.0. - [Release notes](https://github.com/docker/build-push-action/releases) - [Commits](https://github.com/docker/build-push-action/compare/7f9d37fa544684fb73bfe4835ed7214c255ce02b...ac9327eae2b366085ac7f6a2d02df8aa8ead720a) --- updated-dependencies: - dependency-name: docker/build-push-action dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2022-03-21pumi: add v2.2.7 (#29521)Cameron Smith1-0/+1
2022-03-21hdf5: add v1.13.1 (#29514)Larry Knox1-22/+23
Also add preferred=True to all "maintenance versions".
2022-03-21elfio: add v3.10 (#29644)Harmen Stoppels1-0/+1
2022-03-21r-recipes: add v0.2.0 (#29623)Glenn Johnson2-0/+31
Also add new package: r-hardhat.
2022-03-21augustus: explicitly depend on ncurses (#29597)Glenn Johnson2-1/+2
2022-03-21bamtools: add missing dependency on jsoncpp (#29598)Glenn Johnson1-0/+1
2022-03-21cistem: add missing dependency on libtiff (#29599)Glenn Johnson1-0/+1
2022-03-21cnvnator: tweak dependencies (#29600)Glenn Johnson1-3/+14
- constrain samtools to version 1.13 - replace lzma dependency with xz - add missing dependencies for libdeflate and openssl - explicitly set LD_FLAGS for dependencies in makefile
2022-03-21gate: add v9.1 (#29601)Glenn Johnson1-1/+3
2022-03-21gatetools: add v0.11.2 (#29602)Glenn Johnson1-0/+5
2022-03-21relion: add dependency on libpng for version 4 (#29615)Glenn Johnson1-0/+1
2022-03-21r-future: add v1.24.0 (#29616)Glenn Johnson1-0/+2
2022-03-21r-jsonlite: add v1.8.0 (#29618)Glenn Johnson1-0/+1
2022-03-21r-philentropy: add v0.6.0 (#29619)Glenn Johnson2-1/+23
This also adds r-poorman as a new package.
2022-03-21r-pillar: add v1.7.0 (#29620)Glenn Johnson1-0/+2
2022-03-21r-rcurl: add v1.98-1.6 (#29622)Glenn Johnson1-0/+1
2022-03-21crmc: new package (#29371)haralmha1-0/+48
2022-03-21ftjam: add new package (#29320)haralmha1-0/+18
2022-03-21xyce: switch to Trilinos 13.2.0 and add dependencies for +pymi (#29331)Paul Kuberry1-8/+9
* xyce: switch to Trilinos 13.2.0 and add dependencies for +pymi * xyce: clean up Trilinos dependency logic
2022-03-21py-torchgeo: add v0.2.1 (#29632)Adam J. Stewart1-1/+5
2022-03-21python: add v3.10.3 (#29640)Jörg Behrmann1-0/+1
From the release announcement: "This is a special bugfix release ahead of schedule to address a memory leak that was happening on certain function calls when using Cython. The memory leak consisted of a small constant amount of bytes in certain function calls from Cython code. Although in most cases this was not very noticeable, it was very impactful for long-running applications and certain usage patterns. Check bpo-46347 for more information."
2022-03-21libtree: add upperbound for elfio (#29637)Harmen Stoppels1-1/+1
2022-03-20major.minor.micro.dev0 Spack version (#25267)Harmen Stoppels4-102/+91
When you install Spack from a tarball, it will always show an exact version for Spack itself, even when you don't download a tagged commit: ``` $ wget -q https://github.com/spack/spack/archive/refs/heads/develop.tar.gz $ tar -xf develop.tar.gz $ ./spack-develop/bin/spack --version 0.16.2 ``` This PR sets the Spack version to `0.18.0.dev0` on develop, following [PEP440](https://github.com/spack/spack/pull/25267#issuecomment-896340234) as suggested by Adam Stewart. ``` spack (fix/set-dev-version)$ spack --version 0.18.0.dev0 (git 0.17.1-1526-e270464ae0) spack (fix/set-dev-version)$ mv .git .git_ spack $ spack --version 0.18.0.dev0 ``` - [x] Update the release guide - [x] Add __version__ to spack's __init__.py - [x] Use PEP 440 canonical version strings - [x] Make spack --version output [actual version] (git version) Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2022-03-20cmake: 3.21.x, 3.22.x bump (#29633)Harmen Stoppels1-0/+3
2022-03-20rivet: fix dependency build types (#29358)Valentin Volkl1-12/+9
* rivet: fix dependency build types If it isn't a python package, there is no good reason to change the default build type to remove link * rivet: turn swig into build dependency
2022-03-20dealii: new version and restrict sundials version (#29631)Luca Heltai1-1/+3
2022-03-20py-torch: set INTEL_MKL_DIR (#29613)Glenn Johnson1-0/+5
Add the INTEL_MKL_DIR variable so py-torch can find mkl if provided by intel-oneapi-mkl.
2022-03-20OpenJDK: add 11.0.14.1, 17.0.2 (#29167)Diego Alvarez1-2/+19
* Added OpenJDK 11.0.14.1 and 17.0.2 * Fix preferred_defined change.
2022-03-20rust: new version 1.58.1 and deprecate older (#29322)Vivian Hafener1-33/+40
* Added rust version 1.58.1 * Fixed flake8 style errors Co-authored-by: Viv Eric Hafener <vehrc@sporcbuild.rc.rit.edu>
2022-03-20botan: new versions 2.18.2, 2.19.0 and 2.19.1 (#29361)Martin Aumüller1-0/+3
2022-03-20Enable GCS urls as valid (#29592)Doug Jacobsen3-1/+13
* Add tests to ensure google cloud storage urls work as mirrors This commit adds two tests to track that GCS buckets can work as mirrors, and can be parsed as valid URLs. Currently, gs:// format URLs are not correctly parsed. * Fix URL parsing for GCS buckets This commit adds GCS bucket URLs as valid URLs.
2022-03-19We were doing a check in a metaclass to ensure that Package classes weren't ↵Peter Scheibel1-1/+1
defining a function themselves; this check failed (erroneously) if that Package class subclassed another package class (because the check examined all superclasses and thought the definition we automatically add was an offender) (#29569)
2022-03-19GDAL: add v3.4.2 (#29496)Adam J. Stewart1-3/+6
2022-03-19py-torch-sparse: add missing dependency on py-torch (#29612)Glenn Johnson1-0/+1
2022-03-19Revert "Add command for reading a json-based DB description (#24894)" (#29603)Nils Vu14-712/+41
This reverts commit 531b1c5c3dcc9bc7bec27e223608aed477e94dbd.
2022-03-19py-pysam: update to version 0.18.0 (#29609)Glenn Johnson1-0/+2