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2024-02-12podio: add 0.99 pre-release version and deprecate all older versions (#42526)Thomas Madlener1-6/+31
2024-02-12samtools: add v1.19.2 (#42550)James Beal2-0/+3
Co-authored-by: James Beal <jb23@sanger.ac.uk>
2024-02-12edm4hep: add v0.10.5, deprecate broken v0.10.4 (#42561)Thomas Madlener1-1/+6
2024-02-12litestream: add new package (#42565)Caetano Melone1-0/+25
2024-02-12Fixed papi release tar hash due to rebuild of tar file (#42567)G-Ragghianti1-1/+1
2024-02-12mpich: Fix +vci variant for newer releases (#42570)Ken Raffenetti1-1/+0
--with-ch4-max-vcis=default is no longer accepted by MPICH configure since the 4.1 release. Just omit the option from the +vci variant, since configure will select the default value in its absence.
2024-02-12flux-core: drop czmq,jsonschema requirements for recent versions (#42560)Mark Grondona1-2/+2
Problem: Older versions of the flux-core package require czmq and jsonschema, but these dependencies have been dropped in recent versions. Add `when=` arguments to drop these requirements for the appropriate versions of flux-core.
2024-02-12libuv: update compiler requirements (#42576)Julien Cortial1-0/+8
2024-02-12py-lightning: add v2.2.0 (#42577)Adam J. Stewart1-3/+6
2024-02-12lammps: add v20240207 (#42587)Richard Berger1-1/+2
* lammps: correct license LAMMPS has always been GPL-2.0 only. The clarification was made here: https://github.com/lammps/lammps/commit/9a8ac23663027f319c98ed4a08d4cda55faec606
2024-02-12pika: add v0.22.2 (#42617)Mikael Simberg1-0/+1
2024-02-12orca: added new versions (#38822)Sebastian Ehlert2-21/+64
2024-02-12freexl: add v2.0.0 (#42574)Sinan1-0/+4
Co-authored-by: sbulut <sbulut@3vgeomatics.com>
2024-02-12xmlf90: add version and fix for fujitsu compiler (#42305)kinagaki-fj2-8/+26
2024-02-12blitz: fix for fujitsu compiler (#42307)kinagaki-fj2-0/+44
Co-authored-by: m-shunji <m.shunji@fujitsu.com>
2024-02-12raylib: add new package (#42594)George Malerbo1-0/+31
2024-02-12coretuils: add v9.4 (#42596)Alec Scott1-0/+1
2024-02-12curl: add v8.6.0 (#42597)Alec Scott1-0/+1
2024-02-12Fix for tirpc variable in libdap4 (#42511)Brian Vanderwende1-1/+1
2024-02-12Sleef: fix build on macOS arm64, add test support (#42583)Adam J. Stewart2-23/+32
2024-02-12bfs: add v3.1 (#42595)Alec Scott1-0/+2
2024-02-12lwgrp: add autotools deps when building @main (#42564)Elsa Gonsiorowski, PhD1-0/+6
2024-02-12conduit: add v0.9.1 (#42510)Cyrus Harrison1-1/+6
2024-02-12sirius: fix self-referential dependencies (#42552)Massimiliano Culpo1-13/+16
2024-02-12spla: fix self-referential dependencies (#42553)Massimiliano Culpo1-4/+4
2024-02-12glab: add v1.36.0 (#42610)Alec Scott1-0/+1
2024-02-12xz: add v5.4.6 & v5.4.5 (#42612)Alec Scott1-0/+2
2024-02-12go: add v1.22.0 (#42611)Alec Scott2-1/+14
2024-02-12nvpl-lapack: fix versioning and add missing dependency (#42599)Alberto Invernizzi1-2/+10
* fix wrong versioning use doc version and not the one extrapolated from the path (i.e. 0.2.0.1) * nvpl-lapack requires nvpl-blas propagate matching variants to nvpl-blas dependency Co-authored-by: albestro <albestro@users.noreply.github.com>
2024-02-12yosys: add v0.38 (#42616)Dave Keeshan1-0/+1
2024-02-11py-immutables: fix building, add new versions (#42530)Maciej Wójcik1-0/+5
* py-immutables: fix building, add new versions * Explain constraint * py-immutables: Wrap line
2024-02-11fenicsx: deprecate older versions (#42613)Garth N. Wells6-30/+66
* Deprecate FEniCSx packages * Format files * Simplification
2024-02-11py-configargparse: add new versions (#42533)Maciej Wójcik1-2/+4
* py-configargparse: add new versions * py-configargparse: Remove unnecessary constraint
2024-02-11Update package versions: RADICAL-Cybertools (RE, RG, RP, RS, RU) (#41997)Mikhail Titov5-81/+328
* rct: update packages (RE, RG, RP, RS, RU) with new versions * rct: updated style * rct: 1.46 release * rct: RP 1.46.1 (hotfix applied) * rct: deprecated old versions * Update var/spack/repos/builtin/packages/py-radical-entk/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-radical-pilot/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-radical-saga/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * rct: brought back dependencies for deprecated versions * rct: RP hotfix release 1.46.2 * rct: new stack release 1.47.0 --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-02-11py-gpy: added +plotting variant (#42588)Alex Leute1-0/+6
Co-authored-by: Alex C Leute <aclrc@rit.edu>
2024-02-11libEnsemble: add v1.2.0 (#42591)Stephen Hudson1-1/+3
2024-02-11py-versioneer-518: add a workaround (#42534)Maciej Wójcik1-0/+4
2024-02-11py-deeptools: add 3.5.3 (#39951)George Young1-16/+8
* py-deeptools: add 3.5.3 * switching tp pypi * removing patch for tests --------- Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2024-02-11Add pre-commit 3.6.0 (#42404)Eric Berquist1-0/+2
* Add pre-commit 3.6.0 * pre-commit 3.6.0 drops support for Python <3.9
2024-02-11py-ucsf-pyem: updating to commit e92cd4d (#42428)George Young2-12/+30
* py-ucsf-pyem: updating to commit e92cd4d * py-pyfftw: updating to @0.13:1 * py-ucsf-pyem: correcting install of scripts * Upper limits Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Upper limits Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * updates from github review --------- Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-02-11new builtin package: py-simpletraj (#42460)Dani1-0/+23
* new builtin package: py-simpletraj * long line splitted in two for the style test * removed trailing whitespace for the style test
2024-02-11[oneapi]: make headers match oneapi vars.sh (#42614)Robert Cohn5-13/+38
* [oneapi]: make headers match oneapi vars.sh * update * update
2024-02-10gromacs: add new version (#42609)Maciej Wójcik1-0/+1
2024-02-10openmpi: add 5.0.2 (#42568)Howard Pritchard1-2/+5
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2024-02-10mfem: fix self-referential dependencies (#42487)Massimiliano Culpo1-43/+28
2024-02-10viennarna package: add v2.6.4 (#42606)snehring1-0/+2
2024-02-09fzf package: add v0.46.1 (#42603)Alec Scott1-5/+4
* fzf: add v0.46.1 * Standardize vim plugin install
2024-02-09gh package: add v2.43.1 (#42604)Alec Scott1-0/+4
* gh: add v2.43.1 * gh: fix go dependency versions
2024-02-09libsixel: add new package (#40031)James Taliaferro1-0/+42
* add new package libsixel * reorder to group variants and dependencies together * Switch to using source from fork The original developer of libsixel, Hayaki Saito (@saitoha), disappeared in early 2020 and has not updated the repository or been seen since. However, a fork of the project has been created at libsixel/libsixel, and that fork has been getting much more regular updates. In this commit I switch the package to using the better-maintained, now apparently canonical fork of the project. That project switched the build system from autotools to Meson, so much of the build arguments code needed to be rewritten. The newest official release also contained an error in meson.build which would break on newer versions of Meson. That error only applied to the libjpeg and libpng variants, though, so I switched the default to use libgd which has broader format support anyway. * blacken * broke description into multiple lines * allow libjpeg, etc to be loaded automatically
2024-02-09Resolve unzip build failure with %oneapi (#42593)Chris Marsh1-4/+5
* apply patch to all compilers as per spack/issues/42007 * [@spackbot] updating style on behalf of Chrismarsh * Resolve flake8 style issue from spackbot * fix flake8 trailing whitespace --------- Co-authored-by: Chrismarsh <Chrismarsh@users.noreply.github.com>
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