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2023-07-21py-isort: add 5.12.0 and fix build of 5.10.1 (#39033)Manuela Kuhn1-4/+8
2023-07-21qt-*: update for 6.5.2 (#39038)Martin Aumüller5-0/+6
2023-07-21Remove spack.repo.IndexError (#39029)Massimiliano Culpo1-4/+0
This exception is never used and overrides a built-in.
2023-07-21julia: Update hashes of github-generated patch files (#39034)Mosè Giordano1-3/+3
2023-07-21e4s ci: add cray-sles ministack (#38744)eugeneswalker16-139/+548
* e4s ci: add cray-sles ministack * fix typo: variables, not env
2023-07-21binary_caches.rst: fix typo (#39030)Ashwin Kumar Karnad1-1/+1
2023-07-20py-mpi4py: does not yet support cython 3 (#38996)Adam J. Stewart1-0/+3
2023-07-20proj: fix build of v7 with GCC 13 & add 9.2.1 (#39004)Martin Aumüller1-0/+7
* proj: fix building with GCC 13 apply upstream patch from 7.2 branch * proj: checksum 9.2.1 * proj: fix sha256 of patch thank you, @adamjstewart
2023-07-20Add recipe for py-plotext (#39023)mschouler1-0/+20
Co-authored-by: Marc Schouler <marc.schouler@inria.fr>
2023-07-20Add Quo-Vadis package. (#38998)Samuel K. Gutiérrez1-0/+55
Signed-off-by: Samuel K. Gutierrez <samuel@lanl.gov>
2023-07-20nag: update the versioning scheme (#35457)Sergey Kosukhin3-7/+27
* nag: append build number to the version * nag: add version 7.1.7125 * nag: deprecate unavailable versions
2023-07-20sensei: add version 4.1.0 (#38959)willdunklin1-0/+1
2023-07-20serf: add 1.3.10 (#38847)Manuela Kuhn1-1/+2
2023-07-20update luajit and fix link on neovim to allow luajit to work on linux ↵Tom Scogland2-2/+5
aarch64 (#38865)
2023-07-20Add boost variant to henson and require it for aarch64 (#38916)Dmitriy1-0/+5
2023-07-20Update GNINA and libmolgrid (#38978)Rocco Meli2-2/+6
* pin protobuf * explicitly select python interpreter * remove python pin
2023-07-20botan: checksum 3.1.0 and 3.1.1 (#39006)Martin Aumüller1-0/+2
2023-07-20release gotcha 1.0.4 (#39007)Hariharan Devarajan1-2/+2
2023-07-20tinygltf: new versions and add release branch (#39012)Martin Aumüller1-0/+5
* tinygltf: new versions and release branch for each minor release available, the newest patch release has been added --------- Co-authored-by: aumuell <aumuell@users.noreply.github.com>
2023-07-20qt: make partially buildable on macos (#38990)Martin Aumüller1-5/+5
- drop use_xcode = True, as this would lead to an attempt install Xcode (#34064) - don't automatically build Qt Location with +opengl, as this is still broken This built sucessfully with qt@5.15.10+opengl+dbus+phonon on ventura/arm without Xcode installed (only command line tools) - I did not check with Xcode installed.
2023-07-20py-lightly: add v1.4.13 (#39019)Adam J. Stewart1-0/+1
2023-07-20[py-wasabi] added version 1.1.2 (#38268)Jen Herting1-1/+6
* [py-wasabi] added version 1.1.2 * [py-wasabi] flake8 * [py-wasabi] - added dependency on py-colorama - updated homepage * [py-wasabi] removed python check for py-colorama * [@spackbot] updating style on behalf of qwertos --------- Co-authored-by: qwertos <qwertos@users.noreply.github.com>
2023-07-20py-stack-data: add 0.6.2 (#38952)Manuela Kuhn1-0/+4
2023-07-20[py-omegaconf] added version 2.2.2 (#38980)Jen Herting1-2/+3
2023-07-20spack.util.lock: add type-hints, remove **kwargs in method signatures (#39011)Massimiliano Culpo4-23/+37
2023-07-19Respect custom user store when bootstrapping (#39001)Massimiliano Culpo3-1/+26
The user store is lazily evaluated. The change in #38975 made it such that the first evaluation was happening in the middle of swapping to user configuration. Ensure we construct the user store before that.
2023-07-19Add new feq-parse version (#38991)Joe Schoonover1-1/+2
* Add new feq-parse version * Swap 2.0.0 for 2.0.1 - resolves feq-parse build failure
2023-07-19justbuild: add v1.1.4 (#38985)Alberto Sartori1-0/+1
2023-07-19modules: use curly braces to enclose value in Tcl modulefile (#38375)Xavier Delaruelle5-44/+95
Use curly braces instead of quotes to enclose value or text in Tcl modulefile. Within curly braces Tcl special characters like [, ] or $ are treated verbatim whereas they are evaluated within quotes. Curly braces is Tcl recommended way to enclose verbatim content [1]. Note: if curly braces charaters are used within content, they must be balanced. This point has been checked against current repository and no unbalanced curly braces has been spotted. Fixes #24243 [1] https://wiki.tcl-lang.org/page/Tcl+Minimal+Escaping+Style
2023-07-19[py-openapi-schema-pydantic] New package (#38973)Jen Herting1-0/+19
2023-07-19[py-langsmith] New package (#38971)Jen Herting1-0/+20
2023-07-19Fetch & patch: actually acquire stage lock, and many more issues (#38903)Harmen Stoppels17-219/+210
* Fetching patches wouldn't result in acquiring a stage lock during install * The installer would acquire a stage lock *after* fetching instead of before, leading to races * The name of the stage for patches was random, so on build failure (where stage dirs are not removed), these directories would continue to exist after a second successful install. * There was this redundant "composite fetch" object -- there's already a composite stage. Remove this. * For some reason we do *double* shasum validation of patches, before and after compression -- that's just too much? I removed it.
2023-07-19[py-uc-micro-py] New package (#38967)Jen Herting1-0/+18
2023-07-19[py-pydub] new package (#38966)Jen Herting1-0/+18
2023-07-19[py-hatch-requirements-txt] new package (#38965)Jen Herting1-0/+19
2023-07-19[py-ffmpy] New package (#38964)Jen Herting1-0/+18
2023-07-19[py-colorama] added version 0.4.6 (#38737)Jen Herting1-3/+6
* [py-colorama] added version 0.4.6 * [py-colorama] limited py-setuptools dependency
2023-07-19drop redundant rpaths post install (#38976)Harmen Stoppels2-0/+152
Spack heuristically adds `<install prefix>/lib` and `<install prefix>/lib64` as rpath entries, as it doesn't know what the install dir is going to be ahead of the build. This PR cleans up non-existing, absolute paths[^1], which 1. avoids redundant stat calls at runtime 2. drops redundant rpaths in `patchelf`, making it relocatable -- you don't need patchelf recursively then. [^1]: It also removes relative paths not starting with `$` (so, `$ORIGIN/../lib` is retained -- we _could_ interpolate `$ORIGIN`, but that's hard to get right when symlinks have to be taken into account). Relative paths _are_ supported in glibc, but are relative to _the current working directory_, which is madness, and it would be better to drop those paths.
2023-07-19py-cython: add v3.0.0 (#38961)Adam J. Stewart4-8/+15
2023-07-19llnl.util.lock: add type-hints (#38977)Massimiliano Culpo3-71/+114
Also uppercase global variables in the module
2023-07-19Remove `LazyReference` from code (#38944)Massimiliano Culpo73-426/+377
A LazyReference object is a reference to an attribute of a lazily evaluated singleton. Its only purpose is to let developers use shorter names to refer to such attribute. This class does more harm than good, as it obfuscates the fact that we are using the attribute of a global object. Also, it can easily go out of sync with the singleton it refers to if, for instance, the singleton is updated but the references are not. This commit removes the LazyReference class entirely, and access the attributes explicitly passing through the global value to which they are attached.
2023-07-19magma: add package name to conflict messages (#38984)Aiden Grossman1-9/+11
Without the package name being present in the conflict messages, it is significantly more difficult to debug concretization failures in environments that contain many packages.
2023-07-19petsc: add version 3.19.3 (#38974)downloadico2-0/+4
2023-07-19rmgdft: add v5.3.1, v5.4.0 and cuda variant (#37813)Emil Briggs1-11/+32
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2023-07-19mesa-glu: Patch register long to long (#38833)Aiden Grossman2-0/+32
mesa-glu still has a couple instances of the register keyword which causes build failures with clang on my platform. This patch removes the register keyword which doesn't have any impact on correctness.
2023-07-19gperf: patch usage of register keyword (#38893)Aiden Grossman2-0/+19
gperf still uses the register keyword in one place which makes compilation fail with c++17. This patch adds in a patch file to remove the usage of the reigster keyword so that it compiles properly.
2023-07-19elfutils: remove conflicts with clang after version 0.186 (#38945)Aiden Grossman1-5/+2
In late 2021 elfutils was patched to make it build with clang, and these patches ended up in version 0.186. This commit updates the conflicts to specify this so elfutils can be built with clang.
2023-07-19amdfftw: turn conflicts into conditional variants (#38221)Carlos Bederián1-76/+51
2023-07-19palace: fix bugs introduced in #38910 (#38983)Sebastian Grimberg1-9/+9
2023-07-18Improve RDKit package (#36566)Rocco Meli3-8/+73