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2023-09-24new package: ecmwf-atlas (#40136)eugeneswalker11-4/+458
2023-09-24build(deps): bump urllib3 from 2.0.4 to 2.0.5 in /lib/spack/docs (#40119)dependabot[bot]1-1/+1
Bumps [urllib3](https://github.com/urllib3/urllib3) from 2.0.4 to 2.0.5. - [Release notes](https://github.com/urllib3/urllib3/releases) - [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst) - [Commits](https://github.com/urllib3/urllib3/compare/2.0.4...v2.0.5) --- updated-dependencies: - dependency-name: urllib3 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-09-24blast-plus: add 2.14.1 (#40179)George Young1-0/+1
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-09-24visit: Add NetCDF format support (#40065)Brian Vanderwende1-0/+19
2023-09-24EZTrace: add v2.1 (#39748)François Trahay1-2/+21
2023-09-24garfieldpp: Fix the signature of setup_dependent_build_environment (#40133)Thomas Madlener1-1/+1
2023-09-24sw4: add v3.0 (#40146)Houjun Tang1-2/+2
2023-09-24hmmer: adding new version 3.4 (#40148)snehring1-1/+4
2023-09-24py-torchvision: minimize dependencies (#40163)Adam J. Stewart1-51/+67
2023-09-24py-torchmetrics: add v1.2.0 (#40164)Adam J. Stewart1-4/+3
2023-09-24flecsi: bumping HPX requirement to V1.9.1 (#32355)Hartmut Kaiser1-1/+1
2023-09-24build(deps): bump mypy from 1.5.0 to 1.5.1 in /.github/workflows/style (#40166)dependabot[bot]1-1/+1
Bumps [mypy](https://github.com/python/mypy) from 1.5.0 to 1.5.1. - [Commits](https://github.com/python/mypy/compare/v1.5.0...v1.5.1) --- updated-dependencies: - dependency-name: mypy dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-09-24build(deps): bump actions/checkout from 4.0.0 to 4.1.0 (#40172)dependabot[bot]8-26/+26
Bumps [actions/checkout](https://github.com/actions/checkout) from 4.0.0 to 4.1.0. - [Release notes](https://github.com/actions/checkout/releases) - [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md) - [Commits](https://github.com/actions/checkout/compare/3df4ab11eba7bda6032a0b82a6bb43b11571feac...8ade135a41bc03ea155e62e844d188df1ea18608) --- updated-dependencies: - dependency-name: actions/checkout dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-09-24bfs: add v3.0.2 (#40176)Alec Scott1-0/+1
2023-09-24glab: add v1.33.0 (#40177)Alec Scott1-0/+1
2023-09-24hugo: add v0.118.2 (#40178)Alec Scott1-0/+1
2023-09-24Add mda-xdrlib and update pyedr and panedr (#39912)Rocco Meli3-2/+24
* ensure umpire~cuda~rocm when ~cuda~rocm * Add mda-xdrlib and update pyedr and panedr * Update var/spack/repos/builtin/packages/py-mda-xdrlib/package.py Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com> * code review * fix python pin, conflated with py-tomli --------- Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>
2023-09-24trilinos +shylu: patch to resolve trilinos issue #12048 (#40169)eugeneswalker3-1/+13
* trilinos +shylu: patch to resolve trilinos issue #12048 * e4s ci: build xyce ^trilinos+shylu --------- Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov>
2023-09-23protobuf: add v4.24.3 (#40152)Adam J. Stewart3-10/+12
2023-09-23py-tinyarray: add version 1.2.4, needed for python@3.10 (#40171)Tom Payerle1-0/+4
* py-tinyarray: add version 1.2.4, needed for python@3.10 Added @1.2.4 Require @1.2.4 when using python@3.10: * py-tinyarray: format fix
2023-09-22pumi: add version 2.2.8 (#40143)Cameron Smith1-0/+3
2023-09-22Pin the version of tools used in CI, have dependabot manage their version ↵Massimiliano Culpo3-7/+20
(#40066)
2023-09-22e4s cray rhel stack: expand to full spec list (#40111)eugeneswalker1-13/+122
* e4s cray rhel stack: expand to full spec list * comment out gasnet; require %gcc for unzip * require openblas@0.3.20 to get around %cce error; follow up with issue report * comment out failing specs; * comment out axom and xyce due to errors * improve clarity of failing specs
2023-09-22py-pyzmq: fix order of decorators (#40157)Adam J. Stewart1-2/+1
2023-09-22llvm: add version 17.0.1 (#40108)Satish Balay1-0/+1
2023-09-22Remove distutils dependency in Spack (#40153)Harmen Stoppels2-4/+8
* msvc.py: don't import distutils Introduced in #27021, makes Spack forward incompatible with Python. The module was already deprecated at the time of the PR. * update spack package
2023-09-22py-matplotlib: add v3.7.3 (#39961)Adam J. Stewart1-25/+18
2023-09-22Add support for macOS Sonoma (#40115)Adam J. Stewart1-0/+1
2023-09-22py-pyzmq: force recythonize of older versions (#40151)Harmen Stoppels1-2/+9
2023-09-22py-gpy: re-cythonize & drop python upperbound (#40089)Harmen Stoppels3-1/+24
* py-gpy: drop cython induced python upperbound * py-gpy: bump scipy * py-fn-py: python bounds for old version, new version w/o * py-statsmodels: force recythonization * py-gpy: clarifying comment about cython build type
2023-09-22py-pyproj: add v3.6.1 (#40128)Adam J. Stewart1-1/+3
2023-09-22py-hpbandster: use build/run deps instead of build (#40102)Harmen Stoppels1-2/+2
2023-09-22py-pandas: add v2.1.1 (#40127)Adam J. Stewart2-2/+6
2023-09-22libzmq: fix build with Apple Clang 15.0.0 (#40116)Adam J. Stewart1-3/+3
2023-09-22OpenBLAS: add v0.3.24 (#40132)Adam J. Stewart1-26/+29
Co-authored-by: adamjstewart <adamjstewart@users.noreply.github.com>
2023-09-22py-scikit-learn: add v1.3.1 (#40126)Adam J. Stewart1-0/+1
2023-09-22add met v11.1.0 (#40138)eugeneswalker1-0/+1
2023-09-22add metplus v5.1.0 (#40139)eugeneswalker1-0/+1
2023-09-22add scotch v7.0.4 (#40140)eugeneswalker1-0/+1
2023-09-22py-aiofiles: Add version 0.7.0 required by py-cylc-flow (#39987)Lydéric Debusschère1-2/+6
* py-aiofiles: Add version 0.7.0 required by py-cylc-flow * py-aiofiles: update from review * depends on py-setuptools before 0.6 * depends on py-poetry-core after 0.7 Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com> * py-aiofiles: Taking reviewing into account; add a upper version constraint for Python. * py-aiofiles: update from review, set lower version of python Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-09-21Revert "e4s-cray: drop in ci as there are no runners (#40122)" (#40144)eugeneswalker1-12/+12
This reverts commit bd8d0324a9a06c7acd81485b265ec2a48b579cec.
2023-09-22openssh: Fix segfault on x86_64-darwin (#40044)Thiago Genez1-0/+24
Import patches from homebrew
2023-09-21Update grib-util package.py (#40120)Alex Richert1-3/+14
2023-09-21py-fenics-dolfinx: add version upper bound for Python dependency (#40125)Garth N. Wells1-2/+4
* py-fenics-dolfinx: add upper bound on Python version * Small fix * Update var/spack/repos/builtin/packages/py-fenics-dolfinx/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-09-21Add missing platform in Charm++ (#40051)Rocco Meli1-2/+12
Add missing `linux` platform in Charm++ when building for `arm8`.
2023-09-21lorene: add C++ headers to the install (#39909)Steven R. Brandt1-1/+2
2023-09-21relion: add 4.0.1, fix build on Rocky8 (#40074)George Young1-0/+2
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-09-21phist: fix compatibility with python@3.11: (#40082)Jonas Thies2-0/+30
2023-09-21SIRIUS: remove old versions (#40105)Anton Kozhevnikov4-213/+22
2023-09-21Fix false detection of llvm-amdgpu as llvm and llvm-doe (#40113)Wileam Y. Phan2-0/+4
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