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2023-02-06mash: added patch with limits header (#35209)Luke Diorio-Toth2-1/+15
Co-authored-by: luke <luke@DESKTOP-E4JNTC1.attlocal.net>
2023-02-06libxc 6.0.0: fix a bug affecting CP2K (#35347)Rémi Lacroix1-0/+5
The patch fixes a missing comma at end of line in mgga_xc_b97mv.c.
2023-02-06n2p2: add v2.2.0. (#35348)Rémi Lacroix1-1/+5
2023-02-06py-numpy: add v1.24.2 (#35350)Adam J. Stewart1-0/+1
2023-02-06Add pika 0.12.0 and pika-algorithms 0.1.1 (#35296)Mikael Simberg2-1/+4
2023-02-05qt: new versions 6.4.0, 6.4.1, 6.4.2 (#34698)Wouter Deconinck5-162/+129
* qt: new versions 6.4.0, 6.4.1 - New libpsl vendored dependency in qt-base. - New embree and tinyexr dependency in qt-quick3d. We need to figure out a better way to deal with these vendored dependencies in src/3rdparty. Removing them was a way to make sure they are not used unintentionally. Many of these dependencies cannot be overridden with a QT_FEATURE_system_* flag and are included directly in cpp files. Many change versions from release to release, so even if they use system (ie spack managed) versions we need to support this in the depends_on lines. What we can rely on? - src/3rdparty is where vendored stuff is stored - not much else... Possible ways to deal with this: - Change vendor_deps_to_keep to dict with versions, eg ``` vendor_deps_to_keep = { "xatlas": "@6:", "embree": "@6.4:", "tinyexr": "@6.4:", } ``` - Similarly introduce system_deps_to_use: ``` system_deps_to_use = { "assimp@5.2:": "@6:", } ``` and derive depends_on and QT_FEATURE_system_* from this dict. * qt-*: new version 6.4.2, invert vendored pkgs logic * qt-base: fix vendor_deps_to_avoid typo * qt-*: move lots into QtPackage base layer
2023-02-05Don't use CDash upload URL as report filename (#35338)Massimiliano Culpo4-31/+55
fixes #35337
2023-02-03Require 0.7.1 for ExaGO 1.5.0+. (#35331)Cameron Rutherford1-1/+1
2023-02-03ci: add minimal gpu testing stack (#35251)eugeneswalker3-0/+368
* ci: add minimal gpu testing stack * kokkos +cuda requires +wrapper... * require pass * add raja+cuda
2023-02-03MSVC compiler: add platform toolset version (#35098)John W. Parent1-2/+13
2023-02-03py-packaging: add constrain on python version (#35325)Massimiliano Culpo1-0/+3
2023-02-03py-igor: new package (#35229)Erik Heeren1-0/+19
* py-igor: new package * py-igor: review remarks
2023-02-03Add py netpyne, meautility, and lfpykit (#35262)Erik Heeren3-0/+73
* py-netpyne: new package with dependencies * py-netpyne, py-meautility, py-lfpykit: license update * py-netpyne: review remarks * py-netpyne: style * py-netpyne: don't limit python version
2023-02-03py-glmsingle: add 1.1 (#35311)Manuela Kuhn1-12/+15
2023-02-02CMake: Add version 3.25.2 (#35196)Rémi Lacroix1-0/+1
2023-02-02py-torchmetrics: add v0.11.1 (#35260)Adam J. Stewart1-0/+1
2023-02-02NMake builder: fix incorrect variable reference (#34937)John W. Parent1-1/+1
2023-02-02py-black: add v23.1.0 (#35279)Adam J. Stewart2-6/+9
* py-black: add v23.1.0 * py-packaging: add v23.1.0
2023-02-02Update to latest version. (#35309)Larry Knox1-3/+3
Update hdf5-vol-external-passthrough to latest version compatible with HDF5 1.14
2023-02-02py-minkowskiengine: new package (sparse tensor autodiff by Nvidia) (#35302)Wouter Deconinck1-0/+32
* py-minkowskiengine: new package (sparse tensor autodiff by Nvidia) This python package (with cuda support) provides torch support for sparse tensors. The `pybind11` headers are not found without the patch to `setup.py`. * [@spackbot] updating style on behalf of wdconinc * py-minkowskiengine: depends_on numpy, pybind11 type=link; no patch * [@spackbot] updating style on behalf of wdconinc --------- Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
2023-02-02zlib package: fix build on Windows (#35103)John W. Parent1-3/+3
2023-02-02py-getorganelle: rename to getorganelle and add version 1.7.7.0 (#35270)snehring2-1/+40
* py-getorganelle: rename to getorganelle and add version 1.7.7.0 * py-getorganelle: deprecating package
2023-02-02py-nilearn: add 0.10.0 (#35303)Manuela Kuhn1-0/+10
2023-02-02LAMMPS: Package KIM requires CURL after version 20190329 (#35182)Rémi Lacroix1-0/+1
2023-02-01Use the `maintainers` directive in all packages (#35201)Massimiliano Culpo1493-1525/+1526
2023-02-01amrex: add v23.02 (#35286)Weiqun Zhang1-1/+2
2023-02-01glib: 2.74: needs pcre2@10.34: (#35283)Jordan Galby1-0/+1
2023-02-01[WRF] Adding new versions (#35244)Timothy Brown2-1/+119
* [WRF] Adding new versions. * Style fixes.
2023-02-01fastqc: Use the spack built perl (#35276)Glenn Johnson1-8/+3
The fastqc script was using the system perl. This PR sets the script to use the spack built/provided perl. This PR also removes the code that adds the java path. That should be handled by module loading as far as I know.
2023-02-01Add hdf5 versions 1.14.0, develop-1.14 and update develop version from ↵Larry Knox4-14/+58
develop-1.13 to develop-1.15 (#34734) * Add HDF5 version 1.13.3. * Remove maintainers no longer with The HDFGroup. * Add version hdf5-vol-async@1.4 * Add HDF5 version 1.14.0, develop-1.14, develop-1.15. Add missing conflicts for api version and develop versions. * Add conflicts statement to hdf5/package.py to avoid building hdf5 with MPICH 4.0.x versions with bug that causes testphdf5 test to fail. * Add patch to call find_package(MPI) for dependent packages not finding it, not having called it themselves. * Remove language components from find_package(MPI) in hdf5_1_14_0_config_find_mpi.patch. * Add HDF5 version 1.14.0, develop-1.14, develop-1.15. Add missing conflicts for api version and develop versions. * Add conflicts statement to hdf5/package.py to avoid building hdf5 with MPICH 4.0.x versions with bug that causes testphdf5 test to fail. * Add patch to call find_package(MPI) for dependent packages not finding it, not having called it themselves. * Remove language components from find_package(MPI) in hdf5_1_14_0_config_find_mpi.patch. * Don't guard ParaView patch on HDF5 variant ParaView always needsd HDF5 and ignores the variant. * py-h5py: Newer versions of HDF5 introduce breaking API changes --------- Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com> Co-authored-by: Ryan Krattiger <ryan.krattiger@kitware.com>
2023-02-01Pin black to 22.12.0 to avoid spurious style changes (#35282)Massimiliano Culpo2-2/+2
We need to sync changes on major versions with spackbot, to avoid the bot saying everything is allright and have CI failing nonetheless.
2023-02-01py-equation: new package (#35198)Erik Heeren1-0/+23
* py-equation: new package * py-equation: add variants for extra dependencies
2023-01-31`nccl`: v2.15.5-1, v2.16.2-1 (#35248)Thomas Bouvier1-0/+2
* `nccl`: v2.15.5-1, v2.16.2-1 * Fix wrong sha256 * Revert checksums (after GitHub has algorithm change reverted)
2023-01-31libffi: New version 3.4.4 (#35087)Erik Schnetter1-0/+1
2023-01-31Revert "flex%oneapi@2023.0.0: -Wno-error=implicit-function-declaration ↵eugeneswalker1-4/+0
(#34900)" (#35181) This reverts commit 62f83dfb6dbc86eace56495aa59587ac1942dc20.
2023-01-31Adding rocm-opencl prefix lib path to LD_LIBRARY_PATH for run_environment ↵renjithravindrankannath1-0/+1
(#35011)
2023-01-31Fix awscli and deps (#35158)Harmen Stoppels4-7/+27
* py-docutils/py-pyyaml specify python 3.11 compat * bump awscli / py-botocore * fix botocore again * review fixes * .
2023-01-31Add trilinos-solvers variant to nalu-wind package. (#35267)Alan Williams1-2/+9
* Add trilinos-solvers variant to nalu-wind package. This allows nalu-wind to be built against a trilinos installation which doesn't have amesos2, belos, ifpack2, or muelu enabled, if the nalu-wind user provides the spec 'nalu-wind@master~trilinos-solvers' Support for these solver-packages remains on by default. * Fixed a style issue reported by CI. * Incorporate change in wording suggested from review comments. ... to clarify that at least one, or both, of hypre and/or trilinos-solvers must be enabled. The error condition is if both are disabled. * That style checker is picky... * It really did want a trailing comma...
2023-01-31py-munkres: new package (#35259)Erik Heeren1-0/+19
2023-01-31strumpack +rocm: set CMAKE_CXX_COMPILER to hipcc (#35153)eugeneswalker2-0/+30
* strumpack +rocm: set CMAKE_CXX_COMPILER to hipcc * strumpack@7.0.1+rocm^mpich: patch in upstream commit
2023-01-31py-matplotlibscalebar: new package (#35242)Erik Heeren1-0/+24
* py-matplotlibscalebar: new package * py-matplotlibscalebar: style * py-matplotlib-scalebar: review remarks
2023-01-31py-jinja2-cli: new package (#35238)Erik Heeren1-0/+20
* py-jinja2-cli: new package * Update var/spack/repos/builtin/packages/py-jinja2-cli/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-01-30[py-protoc-gen-swagger] new package (#35241)Jen Herting1-0/+18
* [py-protoc-gen-swagger] new package * [@spackbot] updating style on behalf of qwertos --------- Co-authored-by: qwertos <qwertos@users.noreply.github.com>
2023-01-30Update `py-docker` package (#35217)Jean-Baptiste Skutnik1-2/+13
* Add py-docker@5: * [@spackbot] updating style on behalf of spoutn1k * Ignore `tls` variant * Update var/spack/repos/builtin/packages/py-docker/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * `py-docker`: `py-paramiko` version fix --------- Co-authored-by: spoutn1k <spoutn1k@users.noreply.github.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-01-30arm-forge: add 22.1.3 (#35200)kent-cheung-arm1-0/+9
2023-01-30py-fiona: add v1.9.0 (#35247)Adam J. Stewart2-12/+21
2023-01-30HDF5 static (#34577)Alex Richert1-2/+0
* Add HDF5 static support for netcdf-c * Update var/spack/repos/builtin/packages/hdf5/package.py Apply pkgconfig fix for all libraries, not just lz Co-authored-by: Sergey Kosukhin <skosukhin@gmail.com> * Update package.py Fix pkg config templates * remove subprocess+2 lines * Try netcdf-c changes only Co-authored-by: Sergey Kosukhin <skosukhin@gmail.com>
2023-01-30py-torchgeo: add v0.4.0 (#35155)Adam J. Stewart2-18/+37
* py-torchgeo: add v0.4.0 * Add missing java dep
2023-01-30py-protobuf: various updates (#35188)Adam J. Stewart2-18/+4
2023-01-30py-shapely: add v2.0.1 (#35246)Adam J. Stewart1-7/+8
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