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2022-12-12arrow: dependency fixes (#33666)Jen Herting1-1/+8
+python needs more dependencies don't look for dependency spec when it's not there
2022-12-12Add checksum for py-prometheus-client 0.14.1 (#34259)iarspider1-3/+5
2022-12-12Added ARM/aarch64 conflict to Eddy/Rivas lab tools (#34190)Luke Diorio-Toth2-0/+6
2022-12-12intel-parallel-studio: package is only available for x86_64 (#34392)Bernhard Kaindl1-1/+5
2022-12-12libgit2: add pcre dependency for @0.99: (#34289)Glenn Johnson1-2/+1
2022-12-12build(deps): bump actions/setup-python from 4.3.0 to 4.3.1 (#34413)dependabot[bot]4-12/+12
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4.3.0 to 4.3.1. - [Release notes](https://github.com/actions/setup-python/releases) - [Commits](https://github.com/actions/setup-python/compare/13ae5bb136fac2878aff31522b9efb785519f984...2c3dd9e7e29afd70cc0950079bde6c979d1f69f9) --- updated-dependencies: - dependency-name: actions/setup-python dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2022-12-12py-pytorch-lightning: add v1.8.4 (#34426)Adam J. Stewart1-1/+3
2022-12-12nvhpc: add v22.11 (#34410)Wileam Y. Phan1-0/+14
2022-12-12delly2: add v1.1.6 (#34411)snehring1-8/+19
2022-12-12directives: depends_on should not admit anonymous specs (#34368)Todd Gamblin2-1/+15
Writing a long dependency like: ```python depends_on( "llvm" "targets=amdgpu,bpf,nvptx,webassembly" "version_suffix=jl +link_llvm_dylib ~internal_unwind" ) ``` when it should be formatted like this: ```python depends_on( "llvm" " targets=amdgpu,bpf,nvptx,webassembly" " version_suffix=jl +link_llvm_dylib ~internal_unwind" ) ``` can cause really subtle errors. Specifically, you'll get something like this in the package sanity tests: ``` AttributeError: 'NoneType' object has no attribute 'rpartition' ``` because Spack happily constructs a class that has a dependency with name `None`. We can catch this earlier by banning anonymous dependency specs directly in `depends_on()`. This causes the package itself to fail to parse, and emits a much better error message: ``` ==> Error: Invalid dependency specification in package 'julia': llvmtargets=amdgpu,bpf,nvptx,webassemblyversion_suffix=jl +link_llvm_dylib ~internal_unwind ```
2022-12-12netcdf-c: add libxml2 when +dap (#34178)Brian Vanderwende1-0/+4
2022-12-12Only restrict CMake version in Umpire when `examples` and `rocm` are enabled ↵Mikael Simberg1-1/+3
(#32025) * Only restrict CMake version in umpire when examples and rocm are enabled * Add CMAKE_HIP_ARCHITECTURES to Umpire and lift cmake version restriction Co-authored-by: Tom Scogland <scogland1@llnl.gov>
2022-12-12py-tensorboard-data-server: add Linux aarch64 support (#34437)Adam J. Stewart1-0/+5
2022-12-12Bump CMake version to 3.25.1 (#34336)John W. Parent1-0/+1
2022-12-12intel-oneapi-* conflicts for non linux, x86 (#34441)Robert Cohn17-700/+663
2022-12-12expat: Add latest release 2.5.0 with security fixes (#34453)Sebastian Pipping1-5/+12
2022-12-12glib: Add list_url+list_depth to list versions (#33904)Stephen Sachs1-0/+2
Co-authored-by: Bernhard Kaindl <contact@bernhard.kaindl.dev>
2022-12-11openblas: fix bound :7.3 to :7.3.0 (#34443)Harmen Stoppels1-1/+3
This patch: https://gcc.gnu.org/legacy-ml/gcc-patches/2018-01/msg01962.html is actually in Amazon Linux GCC 7.3.1, which we use in CI. So we should not hold openblas back because of it. Old versions of OpenBLAS fail to detect the host arch of some of the AVX512 cpus of build nodes, causing build failures. Of course we should try to set ARCH properly in OpenBLAS to avoid that it looks up the build arch, but that's quite some work.
2022-12-10`pkg grep`: use `capfd` instead of executable for testsTodd Gamblin1-5/+5
2022-12-10Revert "Use `urllib` handler for `s3://` and `gs://`, improve `url_exists` ↵Todd Gamblin4-77/+121
through HEAD requests (#34324)" This reverts commit db8f115013d3a6991da3f92aeee3e49327a24833.
2022-12-10py-scipy: print error message if no Fortran compiler is available (#34439)Michael Kuhn1-0/+5
2022-12-10py-scikit-learn: add v1.2.0 (#34408)Adam J. Stewart1-22/+18
2022-12-10py-setuptools-scm-git-archive: add 1.4 (#34422)Manuela Kuhn1-0/+1
2022-12-10py-{boto3,botocore,jmespath,s3transfer} bump (#34423)Harmen Stoppels4-14/+56
2022-12-10valgrind: add v3.20.0, mark macOS conflict (#34436)Adam J. Stewart1-2/+9
2022-12-09Support for building Pmix with Debian/Ubuntu external dependencies (#32690)Abhik Sarkar3-0/+36
* Debian like distros use multiarch implementation spec https://wiki.ubuntu.com/MultiarchSpec Instead of being limited to /usr/lib64, architecture based lib directories are used. For instance, under ubuntu a library package on x86_64 installs binaries under /usr/lib/x86_64-linux-gnu. Building pmix with external dependencies like hwloc or libevent fail as with prefix set to /usr, that prefix works for headers and binaries but does not work for libraries. The default location for library /usr/lib64 does not hold installed binaries. Pmix build options --with-libevent and --with-libhwloc allow us to specify dependent library locations. This commit is an effort to highlight and resolve such an issue when a users want to use Debian like distro library packages and use spack to build pmix. There maybe other packages that might be impacted in a similar way. * Adding libs property to hwloc and libevent and some cleanups to pmix patch * Fixing style and adding comment on Pmix' 32-bit hwloc version detection issue
2022-12-10Use `urllib` handler for `s3://` and `gs://`, improve `url_exists` through ↵Harmen Stoppels4-121/+77
HEAD requests (#34324) * `url_exists` improvements (take 2) Make `url_exists` do HEAD request for http/https/s3 protocols Rework the opener: construct it once and only once, dynamically dispatch to the right one based on config.
2022-12-09py-simplejson: add 3.18.0 (#34430)Manuela Kuhn1-1/+2
2022-12-09package/qt-base: add conflict for older gcc (#34420)Sinan1-0/+3
2022-12-09geant4: version bumps for Geant4 11.1.0 release (#34428)Ben Morgan4-5/+26
* geant4: version bumps for Geant4 11.1.0 - Version bumps for new data libraries - g4ndl 4.7 - g4emlow 8.2 - Add geant4-data@11.1.0 - Checksum new Geant4 11.1.0 release - Limit +python variant to maximum of :11.0 due to removal of Geant4Py in 11.1 - Update CLHEP dependency to at least 2.4.6.0 for this release - Update VecGeom dependency to at least 1.2.0 for this release, closing version ranges for older releases to prevent multiple versions satisfying requirement * geant4: correct max version for python support
2022-12-09gitlab ci: more resources for paraview and py-torch (#34412)Scott Wittenburg4-1/+6
2022-12-09[darshan-runtime, darshan-util, py-darshan]: darshan 3.4.1 release updates ↵shanedsnyder3-2/+24
(#34294)
2022-12-09New package: py-torchdiffeq (#34409)Jen Herting1-0/+20
* [py-torchdiffeq] new package * [@spackbot] updating style on behalf of qwertos Co-authored-by: qwertos <qwertos@users.noreply.github.com>
2022-12-09py-nbformat: add 5.7.0 and new package py-hatch-nodejs-version (#34361)Manuela Kuhn2-6/+29
2022-12-09py-setupmeta: add 3.3.2 (#34421)Manuela Kuhn1-0/+1
2022-12-09new command: `spack pkg grep` to search package files (#34388)Todd Gamblin5-7/+137
It's very common for us to tell users to grep through the existing Spack packages to find examples of what they want, and it's also very common for package developers to do it. Now, searching packages is even easier. `spack pkg grep` runs grep on all `package.py` files in repos known to Spack. It has no special options other than the search string; all options passed to it are forwarded along to `grep`. ```console > spack pkg grep --help usage: spack pkg grep [--help] ... positional arguments: grep_args arguments for grep options: --help show this help message and exit ``` ```console > spack pkg grep CMakePackage | head -3 /Users/gamblin2/src/spack/var/spack/repos/builtin/packages/3dtk/package.py:class _3dtk(CMakePackage): /Users/gamblin2/src/spack/var/spack/repos/builtin/packages/abseil-cpp/package.py:class AbseilCpp(CMakePackage): /Users/gamblin2/src/spack/var/spack/repos/builtin/packages/accfft/package.py:class Accfft(CMakePackage, CudaPackage): ``` ```console > spack pkg grep -Eho '(\S*)\(PythonPackage\)' | head -3 AwsParallelcluster(PythonPackage) Awscli(PythonPackage) Bueno(PythonPackage) ``` ## Return Value This retains the return value semantics of `grep`: * 0 for found, * 1 for not found * >1 for error ## Choosing a `grep` You can set the ``SPACK_GREP`` environment variable to choose the ``grep`` executable this command should use.
2022-12-09py-torchvision: fix typo in version restriction for ffmpeg (#34415)snehring1-1/+1
2022-12-09Add checksum for py-packaging11 0.12.3 (#34402)iarspider1-0/+2
2022-12-09Windows: reenable unit tests (#33385)John W. Parent24-135/+190
Unit tests on Windows are supposed to pass for any PR to pass CI. However, the return code for the unit test command was not being checked, which meant this check was always passing (effectively disabled). This PR * Properly checks the result of the unit tests and fails if the unit tests fail * Fixes (or disables on Windows) a number of tests which have "drifted" out of support on Windows since this check was effectively disabled
2022-12-09binary distribution: warn about issues (#34152)Harmen Stoppels1-3/+8
2022-12-09btop++: add new package (#34399)Massimiliano Culpo1-0/+26
2022-12-09Add checksum for py-onnxmltools 1.11.1 (#34400)iarspider1-0/+7
2022-12-09bugfix: `spack load` shell test can fail on macos (#34419)Todd Gamblin1-1/+2
At some point the `a` mock package became an `AutotoolsPackage`, and that means it depends on `gnuconfig` on macOS. This was causing one of our shell tests to fail on macOS because it was testing for `{a.prefix.bin}:{b.prefix.bin}` in `PATH`, but `gnuconfig` shows up between them. - [x] simplify the test to check `spack load --sh a` and `spack load --sh b` separately
2022-12-09Add pika-algorithms package and pika 0.11.0 (#34397)Mikael Simberg3-3/+59
* Add 20 as a valid option for cxxstd to fmt * Add pika 0.11.0 * Fix version constraint for p2300 variant in pika package * Add pika-algorithms package
2022-12-09s3: cache client instance (#34372)Harmen Stoppels4-78/+117
2022-12-08py-reportlab: add 3.6.12 (#34396)Manuela Kuhn1-0/+14
* py-reportlab: add 3.6.12 * Update var/spack/repos/builtin/packages/py-reportlab/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-12-08intel-mkl: It is only available for x86_64 (#34391)Bernhard Kaindl1-0/+4
2022-12-08bcache: Fix check for libintl to work correctly (#34383)Bernhard Kaindl1-1/+1
2022-12-08bash: add v5.2, readline patches (#34301)Adam J. Stewart3-94/+51
2022-12-08Cray manifest: automatically convert 'cray' platform to 'linux' (#34177)Peter Scheibel3-3/+39
* Automatically convert 'cray' platform to 'linux'