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2019-08-01Add libflame (#12193)Sajid Ali2-0/+102
* Add libflame new file: var/spack/repos/builtin/packages/libflame/Makefile_5.1.0.patch new file: var/spack/repos/builtin/packages/libflame/package.py * modified: var/spack/repos/builtin/packages/libflame/package.py
2019-08-01py-pyqt5: add missing py-enum34 dependency (#12224)Adam J. Stewart1-0/+2
2019-08-01bdw-gc: add variant for Multithreading (#12223)t-karatsu1-1/+9
2019-07-31unzip: fix build for cray back-endMark W. Krentel1-2/+5
Fixes #12007. The Cray cc wrappers don't handle the -s flag (strip) cleanly, It's not essential to strip the binary, so just remove the flag on Cray. Note: the default build on Cray is for the back end and the unzip binary won't run on the front end. To build for FE, use something like arch=cray-fe-x86_64.
2019-07-31fix mpa package build error with a patch (#12217)Gregory Lee2-0/+23
2019-07-31patch launchmon to fix char * conversion error (#12219)Gregory Lee2-0/+21
2019-07-31Magma: fix prefix (#12220)Rémi Lacroix1-2/+2
`prefix` is not available in `cmake_args` method, use `self.prefix`. Fixes #12214.
2019-07-31should not need bin prefix on spack command (#12215)Levi Baber1-1/+1
2019-07-31docs: update tutorial slides for PEARC19Todd Gamblin1-9/+9
2019-07-31Update Package Creation Tutorial for PEARC19 (#12209)Adam J. Stewart8-245/+258
* Update Package Creation Tutorial for PEARC19 * A few remaining fixes * Fix section link
2019-07-31Preventing jsoncpp from building tests (#11948)Matthieu Dorier1-1/+6
* Preventing jsoncpp from building tests jsoncpp: making -DJSONCPP_WITH_TESTS=OFF conditioned by self.run_tests
2019-07-31CMake: make ninja verbose as well (#12200)Christoph Junghans1-0/+1
2019-07-31F18: Fix the location to the f18 binary (#12186)Ondřej Čertík1-1/+1
2019-07-31phist: added version 1.8.0 (#12201)jthies1-0/+1
2019-07-31igvtools: fixed query on jdk instead of java (#12195)t-karatsu1-1/+1
2019-07-31Print environment name when removing active env (#12198)Javier Cervantes1-1/+2
2019-07-31Fix Sphinx deprecation warning when building docs (#12205)Adam J. Stewart1-3/+2
* Fix Sphinx deprecation warning when building docs * Set minimum required version of Sphinx
2019-07-31kim-api: added version 2.1.2 (#12189)Ryan S. Elliott1-1/+2
2019-07-31genomefinisher: fixed query on jdk instead of java (#12196)t-karatsu1-1/+1
2019-07-30Add pandas 0.25.0 (#12173)Adam J. Stewart1-5/+37
2019-07-30Add tables 3.5.2 (#12172)Adam J. Stewart1-14/+21
2019-07-30Update numexpr dependency version (#12168)Adam J. Stewart1-1/+1
2019-07-30Add py-matplotlib 3.1.1 (#12164)Adam J. Stewart1-73/+98
2019-07-30Add py-wxpython package (#12163)Adam J. Stewart11-9/+47
2019-07-30Add py-cairocffi package (#12161)Adam J. Stewart1-0/+27
2019-07-30Add SIPPackage base class (#12157)Adam J. Stewart18-44/+371
2019-07-30Add Magics 4.1.0 (#12078)Adam J. Stewart1-2/+7
2019-07-30Add eccodes 2.13.0 (#12077)Adam J. Stewart1-1/+4
2019-07-30Allow bsseeker to build with Python 3 (#12075)Adam J. Stewart1-1/+1
2019-07-30Add py-pipits 2.4 (#12074)Adam J. Stewart4-8/+81
* Add py-pipits 2.4 * Flake8 fix
2019-07-30mii: new package at 1.0.2 (#12184)Justin S1-0/+25
* mii: new package at 1.0.2 * mii: fix improper formatting in description * mii: add 1.0.3
2019-07-30gromacs: added version 4.5.5 (#12197)健美猞猁1-0/+1
2019-07-29New package: cgdb (#12154)Ben Bergen1-0/+27
2019-07-29LIBXSMM package: add version 1.13 and optional shared libs (#11998)Hans Pabst1-13/+14
* Add +shared variant, which builds shared library in addition to the static library. * Install libraries even when specifying the header-only option (header-only is just about installing an additional folder). * An additional make call is not required to build generator executables (they are built by default). * Streamlined help-line of each variant.
2019-07-29hpgmp package: Don't add cpu=native on ARM when using gcc 5.x or before (#12034)Toyohisa Kameyama1-1/+1
2019-07-29CMOR package: add version 3.4.0 (Python3-compatible) (#12076)Adam J. Stewart1-2/+3
2019-07-29Quantum Espresso package: Specify F90 compiler (#12119)Nick Forrington1-0/+1
2019-07-29SimulationIO package: add version 9.0.1 (#12079)Adam J. Stewart1-1/+3
2019-07-29catalyst package: Fix paths used for intermediate code generation (#12082)Chuck Atkins1-5/+5
Fixes #12065
2019-07-29PISM package: add version 1.1.4 (#12083)Adam J. Stewart1-1/+3
2019-07-29Typo fixes in Environments Tutorial (#12107)Adam J. Stewart1-11/+11
2019-07-29Fix some Mac constraint checks (#12138)Adam J. Stewart3-10/+6
* Fix Mac platform check for dependency in py-ipython package: 'when' constraints in Spack directives must be Specs (either a Spec object or a Spec in string format) * Fix Mac version check in py-numpy: platform.mac_ver() returns a 3-part string as its first tuple item so the check as written would never pass; use Spack Version object to simplify check. * Fix Mac version check in qt package (the check was incorrectly comparing ints and strings) and use Spack version object to simplify check.
2019-07-29Add conflicts statement for Python-3.6.7+ and Intel compilerGlenn P Johnson1-0/+5
Python-3.6.7 and up do not build with the Intel compiler - https://bugs.python.org/issue35473 - https://bugs.python.org/issue37415
2019-07-29zeromq package: choose URL based on version; add versions (#12149)Federico Ficarelli1-4/+14
* Add versions 4.3.0, 4.3.1, and 4.3.2 * The URL format changed after 4.1.4, so this adds a url_for_version function to choose the URL format based on the version
2019-07-29Gromacs package: add openmp, mdrun_only, double_precision options (#12150)Hironori-Yamaji1-0/+20
2019-07-29New package: py-pytest-isort (#12160)Adam J. Stewart1-0/+19
2019-07-29LLVM package: add optional libomp_tsan support (#11793)Jon Rood1-0/+8
This is only available for LLVM version 6 or greater. So this also adds a conflict statement for earlier versions of LLVM.
2019-07-29update cmake 3.15.1 checksum (#12182)Owen Solberg1-1/+1
2019-07-29OpenGL package: always provides gl (#12158)Adam J. Stewart1-0/+1
With this PR, a user can designate older versions of OpenGL as an external Spack package, and dependents can use that installation as long as they do not have version requirements. MacOS currently comes with OpenGL 2.1; there is currently no 'provides' directive in the OpenGL Spack package which specifies a gl version provided for versions earlier than OpenGL 3.3, so earlier versions of OpenGL are not considered to provide any version of gl. This PR records that any version of OpenGL provides 'gl' (which is sufficient for any package that does not require a specific version of gl).
2019-07-29intel: Add mpicc wrapper bindir to dependent env (#12132)Greg Becker1-0/+5
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