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2022-07-08vim: deprecate 9.0.0000, add 9.0.0045 (#31490)Harmen Stoppels1-1/+2
2022-07-07py-panaroo, py-edlib, and py-intbitset: new packages (#31452)Luke Diorio-Toth3-0/+78
2022-07-07Package/py phylophlan (#31422)Erin Newcomer1-0/+27
* py-phylophlan: new package * py-phyloseq: new package * py-phylophlan: style fix * py-phylophlan: fixed dependencies * py-phylophlan: style fix
2022-07-07OpenBabel: Make building with GUI an option (#31456)Tamara Dahlgren1-0/+3
2022-07-07Fix spack edit message when no editor installed (#31412)Cory Bloor2-1/+15
When no default editor is installed and no environment variable is set, which_string would return None and this would be passed to os.execv resulting in a TypeError. The message presented to the user would be: Error: execv: path should be string, bytes or os.PathLike, not NoneType This change checks that which_string has returned successfully before attempting to execute the result, resulting in a new error message: Error: No text editor found! Please set the VISUAL and/or EDITOR environment variable(s) to your preferred text editor. It's not strictly necessary, but I've also changed try_exec to catch all errors rather than just OSErrors. This would have provided slightly more context for the original error message.
2022-07-07[py-distributed] Add version 2022.2.1 (#31465)Stephen Sachs1-0/+5
2022-07-07py-pytorch-lightning: remove upper bounds on deps (#31443)Adam J. Stewart1-19/+10
2022-07-07mpas-model: Overwrite compiler args in Makefile (#31431)Stephen Sachs1-1/+20
Use 8 byte reals only when `precision=double` is set The pre-defined compilation targets do not follow the usual behavior of Makefiles. Compiler flags are set as strings (not Makefile variables) and as such are not able to be overridden by environment variables. This patch changes the behavior to the expected behavior of a Makefile such that `fflags` etc have the desired effect. Co-authored-by: Stephen Sachs <stesachs@amazon.com>
2022-07-07speexdsp: add pkgconfig dependency (#31455)Ryan Marcellino1-0/+1
2022-07-07py-tensorboard: install from wheel (#31445)Adam J. Stewart1-97/+15
2022-07-07py-rasterio: add v1.3.0 (#31457)Adam J. Stewart1-12/+17
2022-07-07libzmq: fix issue with newer GCC and master branch (#31468)Stephen Sachs1-4/+5
Co-authored-by: Stephen Sachs <stesachs@amazon.com>
2022-07-07py-torch: re-add headers/libs properties (#31446)Adam J. Stewart2-0/+32
2022-07-07py-torchgeo: tiff support required (#31447)Adam J. Stewart1-2/+2
2022-07-07Fix conditional dependencies for openCARP (#31478)Marie Houillon2-3/+3
2022-07-07Documentation: Add SourceforgePackage to the build systems docs (#31473)Tamara Dahlgren2-2/+58
2022-07-07[py-ipyparallel] setuptools.config.StaticModule moved (#31467)Stephen Sachs1-0/+1
* [py-ipyparallel] setuptools.config.StaticModule moved ... in py-setuptools@61 * [py-ipyparallel] setuptools fix only added to release 8.2.1 https://github.com/ipython/ipyparallel/pull/680 * [py-ipyparallel] Fix typo Co-authored-by: Stephen Sachs <stesachs@amazon.com>
2022-07-07removing feature bloat: monitor and analyzers (#31130)Vanessasaurus21-2192/+5
Signed-off-by: vsoch <vsoch@users.noreply.github.com> Co-authored-by: vsoch <vsoch@users.noreply.github.com>
2022-07-06libEnsemble: add v0.9.2 (#31471)Stephen Hudson1-1/+2
2022-07-06kokkos: New version 3.6.01 (#31462)Erik Schnetter1-0/+1
2022-07-06spiner: New version 1.5.1 (#31461)Erik Schnetter1-0/+2
2022-07-06pip bootstrap packages: add myself as maintainer (#31448)Adam J. Stewart3-0/+6
2022-07-06Minor typo fix in mfem's package (#31470)Kenny Weiss1-1/+1
Pointed out by @agcapps
2022-07-06Testing Bugfix: refactor clean --python-cache to support all (#31449)Tamara Dahlgren2-13/+63
There were two choices: 1) remove '-p' from '-a' or 2) allow monkeypatching the cleaning of the python cache since clean's test_function_calls isn't supposed to be actually cleaning anything. This commit supports the latter and adds a test case for `-p`.
2022-07-06amrex: add v22.07 (#31464)Weiqun Zhang1-1/+2
2022-07-06Add checksum for py-lazy-object-proxy 1.7.0 and 1.7.1 (#31435)iarspider1-1/+4
* Add checksum for py-lazy-object-proxy 1.7.0 and 1.7.1 * Update package.py
2022-07-06Add checksum for py-pylint 2.14.4; py-astroid 2.11.5, 2.11.6 (#31436)iarspider3-0/+8
* Add checksums for astroid 2.11.5 and 2.11.6 * Add checksum for py-pylint 2.14.4 * Update package.py * Add checksum for py-tomlkit 0.11.0
2022-07-06add recipe for improved-rdock (#31158)otsukay10-0/+576
* add recipe for improved-rdock * style: fix format * style: fix format again * Fix location of the directory * Fix copyright * Fix according to the reviewer's comments. * Revert "Fix according to the reviewer's comments." This reverts commit 4877877dafda4566a18a33c6ffef6e681b4da896. * Fix according to the reviewer's comments. * style: fix format * Update var/spack/repos/builtin/packages/improved-rdock/package.py Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com> Co-authored-by: Yuichi Otsuka <otsukay@riken.jp> Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-07-06readline: New version 8.1.2 (#31025)Erik Schnetter1-0/+1
2022-07-06Add pika 0.6.0 (#31458)Mikael Simberg1-0/+1
2022-07-05Bazel: new versions, patches, conflicts, and java version contraints (#31402)Adam J. Stewart10-47/+107
2022-07-05py-libclang: add v13.0.0 (#31441)Adam J. Stewart1-1/+2
2022-07-05llvm-openmp: add v14.0.6 (#31440)Adam J. Stewart1-3/+11
2022-07-05hpctoolkit: add variants for gtpin and opencl (#31439)Mark W. Krentel1-13/+37
Reorder a few options to better group them by function.
2022-07-05Add adiak version 0.2.2 (#31438)Matthew LeGendre1-2/+4
2022-07-05Package/ont-guppy (#31417)Luke Diorio-Toth1-0/+52
* guppy: new package * adding different hashs/urls * working now * guppy: new package * ont-guppy: new package * ont-guppy: new package * ont-guppy: fixed style
2022-07-05armpl: Add new versions and rename package to armpl-gcc (#31437)Annop Wongwathanarat1-2/+39
Co-authored-by: Annop Wongwathanarat <annop.wongwathanarat@arm.com>
2022-07-05flecsi: exclude caliper versions that cause aborts with Legion (#31410)Richard Berger1-1/+4
2022-07-05Remove fetch from depfile (#31433)Harmen Stoppels3-51/+19
2022-07-05ROCmPackage: unify amdgpu_targets (#30582)Alberto Invernizzi9-31/+13
* unify amdgpu_targets for rocsolver and rocblas * add more archs * adapt all roc packages to unified amdgpu_targets
2022-07-05bdsim: add new package (#31384)Valentin Volkl1-0/+32
Co-authored-by: gganis <gerardo.ganis@cern.ch>
2022-07-05deal.II: add v9.4.0 (#31279)Jean-Paul Pelteret1-9/+21
2022-07-05libcint: add v5.1.3 (#31340)Paul R. C. Kent1-0/+1
2022-07-05root: set gnuinstall to True (#31209)haralmha1-1/+1
2022-07-05py-torchgeo: latest version of torchvision won't work (#31372)Adam J. Stewart1-2/+2
2022-07-05lammps: add versions and packages Feb-Jun 2022 (#31369)Marco De La Pierre1-3/+15
2022-07-05Build llvm-amdgpu's libcxx with cmake --build (#31403)Mikael Simberg1-1/+1
CMAKE_GENERATOR may be set to something other than "Unix Makefiles" in which case the build would fail because there is no Makefile for make to build.
2022-07-05node-js: fix build on macOS 12 (#31408)Adam J. Stewart1-2/+2
2022-07-05rocalution: add spack build test (#31415)Cory Bloor1-5/+9
- rocprim is a header-only library; its amdgpu_target variant is only meaningful for its client executables, not the library itself - comgr and llvm-amdgpu are merely indirect dependencies (via hip)
2022-07-05pyscf: add v2.0.1 (#31342)Paul R. C. Kent1-0/+5