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workaround for not finding an appropriate libfabrics.so with Intel
MPI 2019+. Fixes #11140 and #12493
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* r-polspline: new package
* r-polspline: updated urls
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(#16667)
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* update tcl naming_scheme to use projections
* add projections to lmod modules
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Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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The issue seems to be fixed in the development version already.
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This change also adds a code path through the spack ci pipelines
infrastructure which supports PR testing on the Spack repository.
Gitlab pipelines run as a result of a PR (either creation or pushing
to a PR branch) will only verify that the packages in the environment
build without error. When the PR branch is merged to develop,
another pipeline will run which results in the generated binaries
getting pushed to the binary mirror.
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Providing only $padding or ${padding} results in an attempt to
substitute a padding of maximum system path length, while leaving
room for the parts of the install path spack generates. Providing
$padding-<len> or ${padding-<len>} simply substitutes padding of
the specified length.
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* Fixing the build directory for cardioid.
* These imports are no longer needed due to deletions.
Co-authored-by: Robert Blake <rob.c.blake.3@gmail.com>
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so lammps can find the installed potential files
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* [maloc] created template
* [maloc] added some build dependencies
* [maloc] added homepage and description
* [maloc] added doc variant in an attempt to disable documentation. Still builds doc though... at least when there is a system doxygen found. Having doxygen being a dependency here can bring python in and cause issues for dependents, even when listed as only a build dependency. Maybe this is a bug?
* [maloc] flake8 and fixme removal
* [maloc] shorted description
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picking up where #15724 left off.
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The pkg-config file of newer versions of at-spi2-core includes
dependencies for xtst, recordproto, inputproto and fixesproto, so they
have to be available at runtime as well.
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Packages built with lmod core_compiler are placed in `Core`.
Other packages may belong in `Core`. For example, python may be built with a proprietary compiler for performance, but belong on the `Core` directory.
With this PR, lmod config can include a `core_specs` list. Any package that satisfies a spec in that list is placed in `Core`, regardless of its compiler or dependencies.
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* Adding ns3 spack
* Format and cleanup of ns3 spack package
* Removing comments and fixing boost variant
* Fixing formating
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* Adding varient for python interface in HELICS
* Append python interface to pythonpath
* cleaning up blank lines
* Update var/spack/repos/builtin/packages/helics/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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* Clarify comments about QMCPACK-to-QE converter.
* Allow hdf5=serial with QE 6.4.1 + qmcpack, but apply filter_file.
* Ammend comments about the use of the filter_file.
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Co-authored-by: Lori Pritchett-Sheats <lpritch@pn2002926.lanl.gov>
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* r-xml2: new version & updated dependencies
* r-xml2: updated dependencies
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This improves the documentation for `spack external find` in several ways:
* Provide a code example of implementing `determine_spec_details` for a package
* Explain how to define executables to look for (and also e.g. that they are treated as regular expressions and so can pull in unexpected files).
* Add the "why" for a couple of constraints (i.e. explain that this logic only works for build/run deps because it examines `PATH` for executables)
* Spread the docs between build customization and packaging sections
* Add cross-references
* Add a label so that `spack external find` is linked from the command reference.
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* py-plotly: unfix dependency versions (fixes #16544)
* py-plotly: add missing dependencies for #16546
* py-plotly: match setup.py instead of requirements.txt for #16546
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* r-testthat : dependencies and version updated
* Adding version conditions for dependencies
* r-testthat: Fix dependecies condition
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Modifications:
- [x] Travis now uses `bionic` as a default (`xenial` used for Python 3.5, `trusty` for Python 2.6)
- [x] Shell unit tests have been factored into their own run
- [x] `kcov` is built only for tests that upload coverage results
Overall with this we shave 3-4 mins. on each run and add an additional run of about 3 min. For some reason `kcov` 38 fails forwarding output when used with Python unit tests, so I used v34 for that and v38 (latest) for shell testing. Previously we were using v25.
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* revbayes: update for 1.1.0
* revbayes: Fix flake8
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