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2020-05-25hdf: new version, variants and refactoring (#16469)Sergey Kosukhin7-34/+143
* hdf: new version, variants and refactoring. * libc provides rpc * Fix szip-related configure argument. * Update dependent packages.
2020-05-25openmpi: get rid of implicit system dependencies (#16758)Sergey Kosukhin11-84/+553
* openmpi: get rid of implicit system dependencies * Python 2 compatibility. * Rename pbspro to openpbs and revert packages.yaml. * Remove virtual package 'sendmail'.
2020-05-25py-moreitertools: added v7.0.0 (#16802)iarspider1-0/+1
2020-05-25r-spatialeco: New package (#16744)Amjad Kotobi1-0/+40
2020-05-25Fix typo for allow_sgid (#16806)Michael Kuhn1-1/+1
fixes #14425 The config: prefix should be included in the actual option name and makes it impossible to change this option.
2020-05-25lua: fix compilation on Cray (#16713)Stephen Herbein1-1/+1
Problem: when calling `static_to_shared_library` on the `cray` arch, it produces a non-sensical compiler command with no input files. For example, when installing lua@5.2.4, it produced: 'gcc -lm -ldl -o /big-long-spack-path/liblua.so.5.2.4' Solution: do the same thing on `cray` that is done for `linux`
2020-05-25netcdf-cxx4: remove erroneous variants (#16762)Tom Payerle1-30/+0
fixes #16725 The dap, jna, pnetcdf, netcdf4, and ncgen4 variants added in #16047 are _not_ supported by the configure script for netcdf-cxx4 package (These appear to be configure args for netcdf-c package).
2020-05-25bugfix: schema errors without line numbers (#16765)Peter Scheibel1-4/+8
* account for schema validation errors where the associated instance doesn't have a line number * fix unrelated flake error (but it must be fixed because this PR touches this file and the flake rules have been updated since the last edit to this file)
2020-05-25libensemble: added v0.7.0 (#16773)Stephen Hudson1-1/+2
2020-05-25py-gdbgui: added v0.13.2.0 (#16781)Michael Kuhn1-8/+10
2020-05-25py-pygdbmi: added v0.9.0.3 (#16778)Michael Kuhn1-0/+4
2020-05-25libmonitor: added v2019.05.31 (#16774)Mark W. Krentel1-2/+3
2020-05-25py-pygments: added v2.6.1 (#16776)Michael Kuhn1-2/+4
2020-05-25libunwind: fix build with gcc@10: (#16782)Michael Kuhn1-1/+9
2020-05-25python: added v3.8.3 (#16775)Michael Kuhn1-0/+1
2020-05-25meson: added v0.54.2 (#16777)Michael Kuhn1-0/+3
2020-05-25py-flask: added v1.1.2 and v0.12.4 (#16779)Michael Kuhn1-1/+3
2020-05-25r-matlab: new package at v1.0.2 (#16785)Amjad Kotobi1-0/+18
2020-05-25testdfsio: added new package at v0.0.1 (#16789)darmac1-0/+24
2020-05-25sqoop: added new package at v1.99.7 (#16786)darmac1-0/+27
2020-05-25glib: added v2.64.3 (#16800)Michael Kuhn1-0/+1
2020-05-25ffsb: added new package at v5.2.1 (#16791)darmac1-0/+18
2020-05-25netlib-scalapack: specify MPI's location for Fujitsu-MPI. (#16798)Tomoki, Karatsu1-0/+9
Fujitsu-MPI wrapper commands aren't recognized from 'FindMPI' function of 'cmake'. If we are using the Fujitsu compiler and Fujitsu MPI, specify the MPI path information explicitly.
2020-05-25likwid: fixed failing build on powerpc (#16797)David Pape1-0/+1
Fixes #16783
2020-05-22TAU: remove ~nls constraint on binutils dependencyKevin Huck1-1/+1
TAU does not require ~nls.
2020-05-22flux-sched: add dependency type for flux-coreStephen Herbein1-7/+8
2020-05-22flux: add dependency types for `python` dependencyStephen Herbein1-4/+7
Flux requires `build` for python and many of the python packages because it builds python bindings. Beyond the bindings, the Flux front-end commands now use python too, hence the `run` type. Finally, Flux's `pymod` module is linked against the python interpreter, so the package requires a `link` dependency on python too.
2020-05-22flux: add latest releases and checksumStephen Herbein2-0/+4
The next release 0.17.0 will also require python3.6+, pre-emptively prepare for that release. Also support current master branch.
2020-05-22r-nimble: New packageAmjad Kotobi1-0/+27
2020-05-22r-rferns: New packageAmjad Kotobi1-0/+16
2020-05-22dealii: 9.2.0 release (#16743)Luca Heltai1-1/+2
2020-05-22r-reticulate: add version; dependencies (#16747)Amjad Kotobi1-1/+3
* Add version 1.15 * Add link dependency on r-rcpp * Add dependency on r-rappdirs
2020-05-22cdo: fix url for version 1.9.8Sergey Kosukhin1-1/+1
2020-05-22tasmanian: add version 7.1 (#16769)Miroslav Stoyanov1-1/+3
2020-05-22zstd: Add 1.4.5Michael Kuhn1-0/+1
2020-05-22py-horovod: add 0.19.3 (#16768)Adam J. Stewart1-1/+2
2020-05-22IWYU: fix 0.14 build (#16761)Seth R. Johnson1-1/+6
* IWYU: fix 0.14 build The CMake patch used for 0.13 hadn't been applied to the master when 0.14 was released, and this version of IWYU requires C++14 or higher. * Flake8
2020-05-22Mark Valgrind as conflicting with macOS > 10.13 (#16759)Seth R. Johnson1-0/+3
``` '/var/folders/fy/x2xtwh1n7fn0_0q2kk29xkv9vvmbqb/T/s3j/spack-stage/spack-stage-valgrind-3.15.0-mtir7ubjz7mqmjbb7bogze2qm35hl4ze/spack-src/configure' '--prefix=/ornldev/code/spack/opt/spack/clang-11.0.0-apple/valgrind/mtir7ub' '--enable-only64bit' '--build=amd64-darwin' 1 error found in build log: 43 checking host system type... x86_64-pc-darwin 44 checking for a supported CPU... ok (x86_64) 45 checking for a 64-bit only build... yes 46 checking for a 32-bit only build... no 47 checking for a supported OS... ok (darwin) 48 checking for the kernel version... unsupported (18.7.0) >> 49 configure: error: Valgrind works on Darwin 10.x, 11.x, 12.x, 13.x, 14.x, 15.x, 16.x and 17.x (Mac OS X 10.6/7/8/9/10/11 and macOS 10.12/13) ```
2020-05-22[Trilinos] Make MPI optional (#16685)Seth R. Johnson1-288/+213
* Make MPI optional for Trilinos * Use 'define' and 'define_from_variant' in trilinos package
2020-05-22ParaView: conflict ~opengl2 with versions 5.5 and up (#16742)Ethan Stam1-0/+3
2020-05-22prrte uses libev data structues, not libevent (#16530)Rob Latham1-1/+2
* use libevent not libev * Add Ralph Castain as a maintainer
2020-05-22ffr: add flag to use fixed format in which the length of one line of the ↵noguchi-k1-0/+2
source code is 255 when building with Fujitsu compiler. (#16737) * ffr: add flag to use fixed format in which the length of one line of the source code is 255 when building with Fujitsu compiler. * ffr: changed to elif.
2020-05-22julia: Fix LLVM build failing with newer versions of CMake (#16738)Carlos Bederián1-1/+2
2020-05-22fraggenescan: new package at v1.31 (#16587)Justin S1-0/+25
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-05-22IWYU: update include-what-you-use version (#16760)Seth R. Johnson1-0/+2
2020-05-22superlu-dist: added v6.2.0 and v6.3.1 (#16704)Mathias Anselmann1-0/+2
2020-05-22julia: added v1.4.1 (#16739)Carlos Bederián1-0/+1
2020-05-22genometools: require cairo pdf backend (#16753)Justin S1-1/+1
2020-05-22sundials: added v5.2.0 and v5.3.0 (#16752)Cody Balos1-0/+2
2020-05-22charmpp: added support to Fujitsu compilers. (#16756)Toyohisa Kameyama2-0/+64
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