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2019-03-12New package: ibm-java (#10777)Mark W. Krentel1-1/+1
* Add binary package of the IBM Java SDK for big and little-endian powerpc (power7, 8 and 9). The jdk and openjdk packages only install on x86_64. * Add ibm-java as a java provider * The jdk and openjdk packages only install on x86_64. Add conflicts for ppc64 and ppc64le to jdk and openjdk.
2019-03-07Create option to build compilers as needed (#10761)Greg Becker1-0/+6
* Create option to build missing compilers and add them to config before installing packages that use them * Clean up kwarg passing for do_install, put compiler bootstrapping in separate method
2019-02-21release workflow: Add spack command for generating the .gitlab-ci.ymlScott Wittenburg1-0/+16
This spack command adds a new schema for a file which describes the builder containers available, along with the compilers availabe on each builder. The release-jobs command then generates the .gitlab-ci.yml file by first expanding the release spec set, concretizing each spec (in an appropriate docker container if --this-machine-only argument is not provided on command line), and then combining and staging all the concrete specs as jobs to be run by gitlab.
2018-12-21Remove /nfs/tmp2 from default build_stage locations (#10170)Elsa Gonsiorowski, PhD1-1/+0
* Remove /nfs/tmp2 from default configuration * /nfs/tmp2 is going away from LC... and doesn’t exist for the rest of the world. * update documentation to remove /nfs/tmp2 as well
2018-11-11Minor changes to Basic Settings docs for SC18 (#9809)Adam J. Stewart1-4/+6
Grammar/spelling issues
2018-11-09Introduce fftw-api virtual package for Intel-MKL and FFTW (#9618)Nichols A. Romero1-0/+1
* Introduce FFTW2 and FFT3 providers for Intel-MKL and FFTW Spack packages. * make fftw default package for fftw-api virtual package * virtual package test assertion now provides location of default virtual packages. * Change name of virtual package to fftw-api and used versioned interface.
2018-10-18Allow setting language of compiler messages (#9486)Michael Kuhn1-0/+8
* Add a build_language config.yaml option which controls the language of compiler messages * build_language defaults to "C", in which case the compiler messages will be in English. This allows Spack log parsing to detect and highlight error messages (since the regular expressions to find error messages are in English) * The user can use the default language in their environment by setting the build_language config variable to null or ''
2018-10-11permissions: add permission configuration to packages.yaml (#8773)Greg Becker1-1/+3
Spack can now be configured to assign permissions to the files installed by a package. In the `packages.yaml` file under `permissions`, the attributes `read`, `write`, and `group` control the package permissions. These attributes can be set per-package, or for all packages under `all`. If permissions are set under `all` and for a specific package, the package-specific settings take precedence. The `read` and `write` attributes take one of `user`, `group`, and `world`. packages: all: permissions: write: group group: spack my_app: permissions: read: group group: my_team
2018-10-10Correct name for install_path_scheme in defaults config.yaml (#9482)Greg Becker1-1/+1
Default config.yaml mis-named `install_path_scheme` as `directory_layout`. This commit corrects the error.
2018-09-25Increase and customize lock timeouts (#9219)Peter Scheibel1-0/+13
Fixes #9166 This is intended to reduce errors related to lock timeouts by making the following changes: * Improves error reporting when acquiring a lock fails (addressing #9166) - there is no longer an attempt to release the lock if an acquire fails * By default locks taken on individual packages no longer have a timeout. This allows multiple spack instances to install overlapping dependency DAGs. For debugging purposes, a timeout can be added by setting 'package_lock_timeout' in config.yaml * Reduces the polling frequency when trying to acquire a lock, to reduce impact in the case where NFS is overtaxed. A simple adaptive strategy is implemented, which starts with a polling interval of .1 seconds and quickly increases to .5 seconds (originally it would poll up to 10^5 times per second). A test is added to check the polling interval generation logic. * The timeout for Spack's whole-database lock (e.g. for managing information about installed packages) is increased from 60s to 120s * Users can configure the whole-database lock timeout using the 'db_lock_timout' setting in config.yaml Generally, Spack locks (those created using spack.llnl.util.lock.Lock) now have no timeout by default This does not address implementations of NFS that do not support file locking, or detect cases where services that may be required (nfslock/statd) aren't running. Users may want to be able to more-aggressively release locks when they know they are the only one using their Spack instance, and they encounter lock errors after a crash (e.g. a remote terminal disconnect mentioned in #8915).
2018-08-23Set DYLD_LIBRARY_PATH on macOS (#9073)Adam J. Stewart3-2/+44
2018-08-06spack general packages.yaml defaults: add unwindGeoffrey Malcolm Oxberry1-0/+2
This commit adds 'libunwind' as the default 'unwind' provider in spack. This preference should be overridden by the darwin/packages.yaml file on macOS. Continues the changes discussed in
2018-08-06darwin packages.yaml defaults: add unwind providerGeoffrey Malcolm Oxberry1-0/+7
This commit adds default unwind providers to the default packages.yaml for darwin. Compiler versions are supplied with the apple-unwind package so that apple-unwind is only used with Apple's clang fork, and not with LLVM's clang.
2018-07-09Add ccache support (#3761)Christoph Junghans1-0/+4
If the user sets "ccache: true" in spack's config.yaml, Spack will use an available ccache executable when compiling c/c++ code. This feature is disabled by default (i.e. "ccache: false") and the documentation is updated with how to enable ccache support
2018-06-24refactor: move templates from root to share/spackTodd Gamblin1-1/+1
- This complies with the unix directory hierarchy standard (which Spack attempts to follow) - Also unclutters the repo root directory.
2018-05-18locks: add configuration and command-line options to enable/disable locks ↵Todd Gamblin1-0/+12
(#7692) - spack.util.lock behaves the same as llnl.util.lock, but Lock._lock and Lock._unlock do nothing. - can be disabled with a control variable. - configuration options can enable/disable locking: - `locks` option in spack configuration controls whether Spack will use filesystem locks or not. - `-l` and `-L` command-line options can force-disable or force-enable locking. - Spack will check for group- and world-writability before disabling locks, and it will not allow a group- or world-writable instance to have locks disabled. - update documentation
2018-05-05Change default elf provider on macOS (#7939)Adam J. Stewart1-0/+2
2018-05-05Set default provider for every virtual package (#7784)Adam J. Stewart1-1/+2
* Set default provider for every virtual package * Add unit test to ensure that every virtual package has a default provider explicitly set
2018-04-12Specify default providers for the glu virtual package. (#7733)Veselin Dobrev1-0/+1
2018-03-25fix outdated comments in config.yaml (#7594)healther1-3/+3
* `spack purge` now is `spack clean`
2018-03-23Add the ability to separate architecture in path scheme (#4329)Mario Melara1-0/+3
* Add format to separate target and os for path spec format can now handle separations of target and os for setting up the path. * Added ${PLATFORM} et al to spec.format() ${PLATFORM}, ${OS}, ${TARGET} * Update tests Updated tests and got rid of unnecessary code. * Also update documentation to reflect this new ability. * Add default path scheme to config.yaml Added default path scheme to config.yaml. Users can overwrite this section if they want.
2018-01-22Update gl/qt options for vtk package (#6551)Scott Wittenburg1-0/+1
This provides options for hardware and software rendering with the gl API and updates the vtk package to make use of those options: * Create new "gl" virtual package, provided by mesa * Add external-only "opengl" package, which represents a system install that provides gl * For vtk: prefer system gl implementation by default to get speed up from hardware rendering. When software rendering is specifically requested (+osmesa), try to use the llvmpipe approach, as it is much faster. * Make qt dependency optional for vtk * Add basic support for VTK on osx * qt: Depend on virtual gl package, rather than mesa impl
2017-11-23Introduce virtual dependency pkgconfig (#5198)Michael Kuhn1-0/+1
There are two providers, pkgconf and pkg-config, with the former being the default provider.
2017-09-19Modulefiles generated with a template engine (#3183)Massimiliano Culpo2-0/+7
* Module files now are generated using a template engine refers #2902 #3173 jinja2 has been hooked into Spack. The python module `modules.py` has been splitted into several modules under the python package `spack/modules`. Unit tests stressing module file generation have been refactored accordingly. The module file generator for Lmod has been extended to multi-providers and deeper hierarchies. * Improved the support for templates in module files. Added an entry in `config.yaml` (`template_dirs`) to list all the directories where Spack could find templates for `jinja2`. Module file generators have a simple override mechanism to override template selection ('modules.yaml' beats 'package.py' beats 'default'). * Added jinja2 and MarkupSafe to vendored packages. * Spec.concretize() sets mutual spec-package references The correct place to set the mutual references between spec and package objects at the end of concretization. After a call to concretize we should now be ensured that spec is the same object as spec.package.spec. Code in `build_environment.py` that was performing the same operation has been turned into an assertion to be defensive on the new behavior. * Improved code and data layout for modules and related tests. Common fixtures related to module file generation have been extracted in `conftest.py`. All the mock configurations for module files have been extracted from python code and have been put into their own yaml file. Added a `context_property` decorator for the template engine, to make it easy to define dictionaries out of properties. The default for `verbose` in `modules.yaml` is now False instead of True. * Extendable module file contexts + short description from docstring The contexts that are used in conjunction with `jinja2` templates to generate module files can now be extended from package.py and modules.yaml. Module files generators now infer the short description from package.py docstring (and as you may expect it's the first paragraph) * 'module refresh' regenerates all modules by default `module refresh` without `--module-type` specified tries to regenerate all known module types. The same holds true for `module rm` Configure options used at build time are extracted and written into the module files where possible. * Fixed python3 compatibility, tests for Lmod and Tcl. Added test for exceptional paths of execution when generating Lmod module files. Fixed a few compatibility issues with python3. Fixed a bug in Tcl with naming_scheme and autoload + unit tests * Updated module file tutorial docs. Fixed a few typos in docstrings. The reference section for module files has been reorganized. The idea is to have only three topics at the highest level: - shell support + spack load/unload use/unuse - module file generation (a.k.a. APIs + modules.yaml) - module file maintenance (spack module refresh/rm) Module file generation will cover the entries in modules.yaml Also: - Licenses have been updated to include NOTICE and extended to 2017 - docstrings have been reformatted according to Google style * Removed redundant arguments to RPackage and WafPackage. All the callbacks in `RPackage` and `WafPackage` that are not build phases have been modified not to accept a `spec` and a `prefix` argument. This permits to leverage the common `configure_args` signature to insert by default the configuration arguments into the generated module files. I think it's preferable to handling those packages differently than `AutotoolsPackage`. Besides only one package seems to override one of these methods. * Fixed broken indentation + improved resiliency of refresh Fixed broken indentation in `spack module refresh` (probably a rebase gone silently wrong?). Filter the writers for blacklisted specs before searching for name clashes. An error with a single writer will not stop regeneration, but instead will print a warning and continue the command.
2017-08-24Make jpeg a virtual dependency. (#5190)Sergey Kosukhin1-0/+1
* Make jpeg a virtual dependency. * Make 'libjpeg-turbo' the default implementation of 'jpeg'.
2017-08-16Refactor IntelInstaller into IntelPackage base class (#4300)Adam J. Stewart1-3/+4
* Refactor IntelInstaller into IntelPackage base class * Move license attributes from __init__ to class-level * Flake8 fixes: remove unused imports * Fix logic that writes the silent.cfg file * More specific version numbers for Intel MPI * Rework logic that selects components to install * Final changes necessary to get intel package working * Various updates to intel-parallel-studio * Add latest version of every Intel package * Add environment variables for Intel packages * Update env vars for intel package * Finalize components for intel-parallel-studio package Adds a +tbb variant to intel-parallel-studio. The tbb package was renamed to intel-tbb. Now both intel-tbb and intel-parallel-studio+tbb provide tbb. * Overhaul environment variables set by intel-parallel-studio * Point dependent packages to the correct MPI wrappers * Never default to intel-parallel-studio * Gather env vars by sourcing setup scripts * Use mpiicc instead of mpicc when using Intel compiler * Undo change to ARCH * Add changes from intel-mpi to intel-parallel-studio * Add comment explaining mpicc vs mpiicc * Prepend env vars containing 'PATH' or separators * Flake8 fix * Fix bugs in from_sourcing_file * Indentation fix * Prepend, not set if contains separator * Fix license symlinking broken by changes to intel-parallel-studio * Use comments instead of docstrings to document attributes * Flake8 fixes * Use a set instead of a list to prevent duplicate components * Fix MKL and MPI library linking directories * Remove +all variant from intel-parallel-studio * It is not possible to build with MKL, GCC, and OpenMP at this time * Found a workaround for locating GCC libraries * Typos and variable names * Fix initialization of empty LibraryList
2017-08-05Add a new package for IcedTea (#4804)snehring1-0/+1
* alsa-lib: new package * cups: new package * icedtea: new package * icedtea: adding JAVA_HOME variable * alsa: removing placeholder * icedtea: typo fix * alsa: fixing formattting * icedtea: formatting fixes and cleanup * icedtea: additional cleanup * jdk: adding provides('java') to jdk, setting jdk to default java. * icedtea: adding jdk as a dependency * java: changing depends_on('jdk') and similar entries to depends_on('java') * icedtea: removing unused imports, trying to placate flake8. * fastqc: fixing flake8 error * bazel: fixing typo in java dependency * jdk: changing provides java to a range * icedtea: cleaning up. Splitting up checksums. * icedtea: jdk dependency is build only
2017-08-04New package libaec: a BSD-licensed replacement for the szip library. (#4437)Sergey Kosukhin1-0/+1
* Added package for 'libaec'. * New version for package 'libaec'.
2017-06-21refactor openfoam packages (#3669)Mark Olesen1-1/+1
* Several improvements for the openfoam packages -- Refactor openfoam packages by adding an OpenfoamArch class Use separate configure, build, install phases. Provide FOAM_PROJECT_DIR dependent env for openfoam packages - easier way to locate Eliminate intermediate installation directories - unneeded clutter. - makes it less than easy to find the etc/bashrc file Add versioning for all openfoam patches - no certainty which parts (if any) will be needed in future versions, especially if we strive to ensure that the upstream version builds well with spack to begin with. Support build of develop branches - helps track build regressions for future openfoam releases STYLE: use common/ and assets/ to provide additional (build) resources ... * - adjust OpenFOAM provider Move openfoam-com up front since this is the one being used as a base for the others
2017-04-15Allow users to set parallel jobs in config.yaml (#3812)Adam J. Stewart1-0/+6
* Allow users to set parallel jobs in config.yaml * Undo change from endash to emdash * Remove parallel config, rename jobs to build_jobs
2017-04-02Set default providers for all virtual dependencies (#3634)Adam J. Stewart1-2/+11
* Set default providers for everything * Add default OpenFOAM provider
2017-03-18Add missing dependencies to gawk (#3481)Adam J. Stewart1-0/+1
* Add missing dependencies to gawk * Fix make check * Add mawk packages and awk virtual dependency * Use mawk instead of gawk to build ncurses * Rearrange order of patches and dependencies
2016-12-07add ACLOCAL_PATH updates for packages that register m4 macros (#2518)Tom Scogland1-0/+2
2016-11-04Set Clang as the default compiler on macOS (#2225)Adam J. Stewart2-0/+19
* Set OS-specific default compilers * Fix flake8 warnings
2016-10-30source_cache, misc_cache, verify_ssl, checksum, & dirty in config.yamlTodd Gamblin1-1/+4
- Added new preferences to config.yaml: - source_cache - misc_cache - verify_ssl - checksum - dirty
2016-10-30Add module_roots to config.yamlTodd Gamblin1-6/+7
2016-10-30Move temp directory configuration to config.yamlTodd Gamblin1-5/+5
- Moved temp finding logic to spack.stage - Updated stage tests - Added tests for new path substaitution of $user, $spack, $tempdir
2016-10-30Rename install.yaml -> config.yaml, install_area -> "store"Todd Gamblin2-8/+64
- Added a schema for config.yaml - Moved install tree configuration to config.yaml - Moved etc/spack/install.yaml to etc/spack/defaults/config.yaml - renamed install_area to "store", to use a term in common with guix/nix. - in `config.yaml` file, it's called the `install_tree` to be more intuitive to users. - `install_tree` might've worked in the code, but `install_tree` is already a global function in the spack namespace, from llnl.util.filesystem.
2016-10-30refactor settings for install area and make them config optionsBenedikt Hegner1-0/+8
2016-09-28py-pil: Protect against building with Python3. (#1868)Elizabeth Fischer1-0/+1
* py-pil: Does not build with Python3. * Set py-pillow to be the default pil provider * Update package.py * Change to comments requested by adamjstewart * Remove version constraint from extends(), avoid a Spack bug.
2016-07-19Add "default" configuration scope.Todd Gamblin4-11/+47
- Default scope is versioned with spack and can be overridden by site or user config. - Default scope provides sensible default concretization preferences for all of Spack. - per-platform concretization scope can be added later (to force a particular MPI on, e.g., Cray systems)
2016-07-11Add share/man to prefix inspections.Glenn Johnson1-0/+2
The share/man path should be in prefix_inspections for MANPATH as share/man is a common location for manual pages.
2016-06-20modules.yaml: use the right envvar for pkg-configBen Boeckel1-2/+2
Fixes #1072.
2016-05-11Simplify /etc/spack/modules.yaml formatting.Todd Gamblin1-11/+22
2016-05-10modules : prefix_inspections moved to modules.yamlalalazo1-0/+10
2016-04-05module file : reverted to sensible defaultalalazo1-4/+0
2016-04-05module file : added filtering based on environment variable namealalazo1-0/+4
2016-03-24module files configuration : added default configurationalalazo1-0/+8
2015-11-28Add default repos.yamlTodd Gamblin1-0/+8