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* Marking database tests as slow
* Marking url command tests as slow
* Marking every test that uses database as slow
* Marking tests that import files as slow
* Marking gpg tests as slow
* Marking all versions and one list tests as slow
* Added more markers to unit tests + cli option to skip slow tests
Following a discussion with Axel, the generic 'slowtest' marker has been
split into 'db', 'network' and 'maybeslow'. A brief description of the
meaning of each marker has been added to pytest.ini.
A command line option to run only fast tests has been added to
'spack test'
* Don't use classes to group tests together
Reverted grouping tests under a class, as required in the review
* Minor style changes
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This attempts to address one of the complaints at #5996 (comment):
> Repo currently caches package instances by Spec, and those Package instances have a Spec.
> This is unnecessary and causes confusion. I think I thought that we'd need to cache instances
> after loading package classes, but really just caching the classes is fine.
With this update, Repo's package cache is removed and Specs cache the package reference themselves. One consequence is that Specs which compare as equal will store separate instances of a Package class (not doing this creates issues for #4595 (comment)).
There were several references to Spec.package that could be replaced with Spec.package_class without any additional modifications. There are still a couple remaining references to Spec.package in Spec that would require adding functionality before replacing (e.g. calling Package.provides and Package.installed).
Note this makes it difficult to mock fetchers for tests which invokes code that reconstructs specs. test_packaging was one example of this where the updates caused a failure (in that case the error was avoided by not making an unnecessary call).
Details:
* Replace instances of spec.package with spec.package_class where a class method is being called
* Remove instances of Repo.get where Spec.package_class can be used in its place
* remove Repo.get caching instances of Package class for specs
* remove redundant check (which is also incorrect now that each spec stores its own copy of its package)
* avoid creating mirror with specs because it copies specs and those copies dont refer to the mocked fetcher (and it is also not required for the test)
* remove checks that are no longer necessary since repo doesn't cache specs
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* Cleaned up JUnit report generation on install
The generation of a JUnit report was previously part of the install
command. This commit factors the logic into its own module, and uses
a template for the generation of the report.
It also improves report generation, that now can deal with multiple
specs installed at once. Finally, extending the list of supported
formats is much easier than before, as it entails just writing a
new template.
* Polished report generation + added tests for failures and errors
The generation of a JUnit report has been polished, so that the
stacktrace is correctly displayed with Jenkins JUnit plugin. Standard
error is still not used.
Added unit tests to cover for installation failures and installation
errors.
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Avoid adding an "outside" (local home's) python user site directory
during python package installs.
Implements #6611
Fixes packages with auto-find side effects such as `py-setuptools`
that cause `py-matplotlib` to fail to build #6558
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- Previously would print the spec's namespace twice, rather
than printing the spec's namespace, followed by the repo's namespace.
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This commit removes logic from Spec that was there only to be used in
tests, and allows to set a new prefix cleanly in user's code.
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The flag_handlers method was being set as a bound method, but when
reset in the package.py file it was being set as an unbound method
(all python2 issues). This gets the underlying function information,
which is the same in either case.
The bug was uncovered for parmetis in #6858. This is a partial fix.
Included are changes to the parmetis package.py file to make use of
flag_handlers.
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The feature added in #4611 is currently broken. This commit fixes the
behavior of the command and adds unit tests to ensure the basic semantic
is maintained.
It also changes slightly the behavior of Spec.concretized to avoid
copying caches before the concretization (as this may result in a
wrong hash computation for the DAG).
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- Generating the HTML from for >2300 packages from RST in Sphinx seems to
take forever.
- Add an option to `spack list` to generate straight HTML instead.
- This reduces the doc build time to about a minute (from 5 minutes on a mac laptop).
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* Vendor ordereddict for python2.6 only
This commit substitutes the custom module 'ordereddict_backport' with
the more known 'ordereddict' and vendors it only for python 2.6. Other
supported versions of python will use 'collections.OrderedDict'.
* Use absolute imports also for python 2.6
See PEP-328 for more information on the subject
* Added provenance of vendored ordereddict
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See #6794
This fixes cases where test-only dependencies were omitted from
consideration when modifying the environment at build time. This
includes an update to the python package definition to add
testing-related python extensions to its specialized environment
setup.
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This updates the conflict-checking logic to require that the conflict
spec matches exactly and that all fields mentioned in the conflict
spec are present in the concretized spec in order to report a
conflict. This will automatically skip all conflict checks for
dependencies of externals (since externals strip dependencies). This
will not affect non-external packages since all fields and
dependencies are fully specified for such packages.
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* Keep track of source and versions for external libraries
* Note source of more obscure libraries
* We aren't upgrading jsonschema after all
* Add note on modifications made to pytest
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* Update to pytest 3.2.5
* Get pytest to pass Python 2.6 compatibility checks
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* Update to the latest version of py
* Revert back to py 1.4.34
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* Add unit tests for spack versions command
* Fix bug in web spidering for Python 2.6
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Some servers report a content-type header instead of Content-Type.
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* add OctavePackage
1. remove import CudaPackage which is not needed anymore
2. mention CudaPackage and OctavePackage in packaging guide
3. adjust OctavePackageTemplate
4. add clue file for Octave build
5. sanity check on self.prefix
* use setup_environment
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* Add unit tests for spack help command
* Work around issue with using `spack help` twice in tests
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* Update to the latest version of argparse
* Re-add colified logic
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* Update to the latest version of distro
* Update distro to 1.0.4
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Fixes #4573
"spack mirror remove" was not actually removing mirrors from the
configuration.
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In Python 2, filter() returns a list, but in Python 3, filter()
returns an iterator, and iterators have no length.
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* Only specify a file as needing relocation if it contains the spack
root as a text string (this constraint also applies to binaries)
* Don't fail if there is an error retrieving RPATH information from a
binary (even if it is specified as requiring relocation)
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This adds the ability for packages to apply compiler flags in one of
three ways: by injecting them into the compiler wrapper calls (the
default in this PR and previously the only automated choice);
exporting environment variable definitions for variables with
corresponding names (e.g. CPPFLAGS=...); providing them as arguments
to the build system (e.g. configure).
When applying compiler flags using build system arguments, a package
must implement the 'flags_to_build_system_args" function. This is
provided for CMake and autotools packages, so for packages which
subclass those build systems, they need only update their flag
handler method specify which compiler flags should be specified as
arguments to the build system.
Convenience methods are provided to specify that all flags be applied
in one of the 3 available ways, so a custom implementation is only
required if more than one method of applying compiler flags is
needed.
This also removes redundant build system definitions from tutorial
examples
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* dealii: add GMSH dependency
* CMakePackage: add CMAKE_FIND_APPBUNDLE to prevent picking up binaries from /Applications
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Fixes #5940
This PR changes the option '--restage' of 'spack install' to
'--dont-restage', inverting its meaning and the default behavior
of the command.
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Fixes #6200
For compilers that successfully run a version detection script but
don't actually return a version, Spack was keeping track of the
empty version and then failing when attempting to construct a
compiler spec. This skips any attempt to add a compiler entry when
no version is reported (but logs when a compiler fails to report
a version).
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* Support pruning of vars with Env from_sourcing_file (issue #6501)
- Blacklist string literals or regular expressions of environment
variables that are to be removed from consideration as being affect
by the sourcing of the file. Conversely, whitelist modifications
that should not ignored. Whitelisted variables have priority over
blacklisting.
Eg,
EnvironmentModifications.from_sourcing_file
(
bashrc
blacklist=['JUNK_ENV', 'OPTIONAL_.*'],
whitelist=['OPTIONAL_REQUIRED.*']
)
This modification can be used to eliminate environment variables that
are not generalized for modules (eg, user-specific variables).
* BUG: module prepend-path in wrong order (fixes #6501)
* STYLE: module variables in sorted order (issue #6501)
- looks nicer and also helps when comparing the contents of different
module files.
* ENH: remove duplicates from env paths when creating modules (issue #6501)
- this makes for a cleaner module environment and helps avoid some
unnecessary changes to the environment that are only provoked by
redundancies in the PATH.
eg,
before PATH=/usr/bin
after PATH=/usr/bin:/usr/bin:/my/application/bin
should only result in /my/application/bin being added to the PATH
and not /usr/bin:/my/application/bin
Activate via the 'clean' flag (default: False):
EnvironmentModifications.from_sourcing_file(bashrc, clean=True,..
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* add -d option for edit command and improve suffix extrapolation from '.py' to use glob
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Fixes #2440
The "Getting started" guide should be short and sweet. This commit
simplifies the "Environment-Modules" section pruning:
- outdated / wrong suggestions as noted in #2440
- uncommon setups that are better treated in a reference guide
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According to the documentation here:
http://www.sphinx-doc.org/en/stable/ext/autodoc.html
"For module data members and class attributes, documentation can either
be put into a comment with special formatting (using a #: to start the
comment instead of just #), or in a docstring after the definition."
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