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#2911" (#3078)
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- Fix format printing to match command line for hashes and full name formats
- Update spack graph to use new format
- Changed format string signifier for hashes from `$#` to `$/`
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Modules generated by the module creation machinery currently print out
a notice that warnts the user that things are being autoloaded. In
some situations those warnings are problematic. See #2754 for
discussion.
This is a first cut at optionally disabling the warning messages:
- adds a helper tothe EnvModule base class that encapsulates the
config file variable;
- adds a method to the base class that provides a default (empty)
code fragment for generating a warning message;
- passes the warning fragment into the bit that formats the autoload
string;
- adds specialized autload_warner() methods in the tcl and lmod
subclasses;; and finally
- touches up the autoload_format strings in the specialized classes.
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Add the ability to the modules generation process to blacklist
packages that were installed implicitly. One can still whitelist
modules that were installed implicitly.
This changes adds a `blacklist_implicts` boolean as a peer to the
`whitelist` and `blacklist` arrays, e.g.:
```
modules:
enable::
- lmod
lmod:
whitelist:
- 'lua'
- 'py-setuptools'
blacklist:
- '%gcc@4.8.3'
blacklist_implicits: True
```
It adds a small helper in `spec.py` and then touches up the package
filtering code in `modules.py`.
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* Add installcheck phase to AutotoolsPackage
* Update installcheck phase with new callbacks API
* build_directory has been converted to a property
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* Replace `spack urls` and `spack url-parse` with `spack url`
* Allow spack url list to only list incorrect parsings
* Add spack url test reporting
* Add unit tests for new URL commands
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* Add several new R packages
* Add a few more R packages
* Update more versions
* Convert Package to RPackage
* Add a few more packages
* Add missing dependencies
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* Fix ambiguous hash message generation. Engineering fix
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* Add MPI docs to packaging guide and simplify packaging guide TOC a bit.
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* AutotoolsPackage: added configure_directory to permit build out of source. The configure script executable is now invoked with an absolute path. Modified a few packages accordingly.
* build_systems: functions returning directories are now properties
* build_systems: fixed issues with tcl and tk
* AutotoolsPackage: reworked recipe for autoreconf
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* Switch from coveralls to codecov
- Add .codecov.yml, simplify .travis.yml
- Add codecov badge to README.md
* Add tests for spack graph.
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* Spec.satisfies accesses Spec.concrete as property
Fixes #2760
When copying a spec, _concrete is always set to False for each
dependency. "Spec.satisfies" was accessing the member "_concrete"
directly instead of using the property "concrete". This means that
if you copy a spec, the dependencies will be considered equal, but
did not necessarily satisfy one another. Spec.satisfies is a
prerequisite for a package to be considered an extension; as a
consequence, an extension with run-time dependencies that were also
extensions did not activate those extensions. This updates
Spec.satisfies to avoid checking the cached member "_concrete"
directly.
* Added test to check for activation of dependency extension
* Added test to check for transitive satisfiability between a spec and its copy
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- Allows hashes to be specified after other parts of the spec
- Does not allow other parts of the spec to be specified after the hash
- The hash must either end input or be followed by another separate spec
- The next spec cannot be an anonymous spec (it must start with a package name or a hash)
See #2769 (after it was merged) for further discussion of this interface addition. That discussion resulted in these requirements:
```
python # 1 spec
/abc123 # 1 spec
python /abc123 # 1 spec
/456789 # 1 spec
python /abc123 /456789 # 2 specs
python /456789 /abc123 # 2 specs
/abc123 /456789 # 2 specs
/456789 /abc123 # 2 specs
/456789 /abc123 python # 3 specs
```
assuming `abc123` and `456789` are both hashes of different python specs.
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* Add support for IBM threaded compilers, xl*_r
Added new compiler class, xl_r; added default flags to the compilers.yaml file.
* Add cppflags to the set of default flags to be added to the compilers stanza in compiler.yaml.
These flags are optional. Only defined flags will be listed in the compilers.yaml file.
* Fix scripting warnings revealed by flake8.
Updated __init__.py and xl_r.py to conform with flake8 rules.
* Add justification to the definition of the XL default compiler flags.
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* PackageMeta: `run_before` is an alias of `precondition`, `run_after` an alias of `sanity_check`
* PackageMeta: removed `precondition` and `sanity_check`
* PackageMeta: decorators are now free-standing
* package: modified/added docstrings. Fixed the semantics of `on_package_attributes`.
* package: added unit test assertion as side effects of install
* build_systems: factored build-time test running into base class
* r: updated decorators in package.py
* docs: updated decorator names
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* documentation: reworked packaging guide to add build-system phases
* documentation: improvements to AutotoolsPackage autodocs
* build_systems: updated autodocs
* run-tests: added a few information on how to run tests fixes #2606 fixes#2605
* documentation: fixed items brought up by @davydden
* typos in docs
* consistent use of 'build system' (i.e. removed 'build-system' from docs)
* added a note on possible default implementations for build-time tests
* documentation: fixed items brought up by @citibeth
* added note to explain the difference between build system and language used in a package
* capitalized bullet items
* added link to API docs
* documentation: fixed multiple cross-references after rebase
* documentation: fixed minor issues raised by @tgamblin
* documentation: added entry in table for the `PythonPackage` class
* docs: fixed issues brought up by @citybeth in the second review
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* Simplify unit tests listed in Contribution Guide
* Use long name for option flags
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Previously, fix_darwin_install_name would only handle dependencies that have no path set, and it ignore dependencies that have the build directory as path baked in. Catch this, and replace it by the install directory.
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* Massive conversion from Package to AutotoolsPackage
* Forgot to convert p4est to AutotoolsPackage
* Fix typo
* Fix broken link in docs
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* check if node is already deleted
* fix variable name
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- Add a PythonPackage class with build system support.
- Support build phases in PythonPackage
- Add a custom sanity check for PythonPackages
- Get rid of nolink dependencies in python packages
- Update spack create to use new PythonPackage class
- Port most of Python packages to new PythonPackage class
- Conducted a massive install and activate of Python packages.
- Fixed bugs introduced by install and activate.
- Update API docs on PythonPackage
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* Initial changes to spack create command
* Get 'spack create <url>' working again
* Simplify call to BuildSystemGuesser
* More verbose output of spack create
* Remove duplicated code from spack create and spack checksum
* Add better documentation to spack create docstrings
* Fix pluralization bug
* Flake8
* Update documentation on spack create and deprecate spack edit --force
* Make it more obvious when we are renaming a package
* Further deprecate spack edit --force
* Fix unit tests
* Rename default template to generic template
* Don't add automake/autoconf deps to Autotools packages
* Remove changes to default $EDITOR
* Completely remove all traces of spack edit --force
* Remove grammar changes to make the PR easier to review
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The `spack module loads` command only supported tcl and dotkit.
This adds support for lmod.
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* Fixed parser to eliminate need for escape quotes. TODO: Fix double call to shlex, fix spaces in spec __str__
* Fixed double shlex
* cleanup
* rebased on develop
* Fixed parsing for multiple specs; broken since #360
* Revoked elimination of the `-` sigil in the syntax, and added it back into tests
* flake8
* more flake8
* Cleaned up dead code and added comments to parsing code
* bugfix for spaces in arguments; new bug found in testing
* Added unit tests for kv pairs in parsing/lexing
* Even more flake8
* ... yet another flake8
* Allow multiple specs in install
* unfathomable levels of flake8
* Updated documentation to match parser fix
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CMakePackage (#2742)
* Added customization for make targets in 'build' and 'install' phases for CMakePackage
* Use rst in build system docs so that Sphinx generates nice API docs
* Allow AutotoolsPackages to be built in a different directory
* Flake8
* Fix missing import
* Allow configure to be located in different directory
* Update espressopp to use build targets
* Flake8
* Sphinx fix, lists must be a new paragraph
* Back out change that allowed a configure script in a different directory than build_directory
* Add missing deps, build in parallel
* Missing space for rst list
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- broke somewhere between bdf48322696290d4e3d00ed12b7c7fe6ca213478 (#2810) and 17b13b161b3ddcd691ea7ed90165cfab6dec3950
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* Removing the nobuild, nolink, and alldeps dependency types in favor of being explicit.
* This will help with maintenance going forward, as adding more dependency types won't affect existing declared dependencies in weird ways.
* default deptype is still `('build', 'link')`
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* GitLab: Tarball Version Test
Upload a test demonstrating #2290
* Add GitLab parsing
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Don't override MODULEPATH with PATH, PATH has no modulefiles
PEP8 compliance
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* Rename packages
* Upcasing depends_on() in packages.
* Downcased extends('r')
* Fixed erroneously changed URL that had slipped through.
* Fixed typo
* Fixed link from documentation into package source code.
* Fixed another doc problem.
* Changed underscores to dashes in package names.
* Added test to enforce lowercase, no-underscore naming convention.
* Fix r-xgboost
* Downcase more instances of 'R' in package auto-creation.
* Fix test.
* Converted unit test packages to use dashes not underscores
* Downcase `r` in the docs.
* Update module_file_support.rst
Fix r->R for class R.
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* Fix issues when a package provides the same vdep twice.
- provides() now adds to a set of provided vdeps instead of a single one.
* flake8
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