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When a pipeline generation job is automatically failed because it
generated jobs for specs known to be broken on develop, print better
information about the broken specs that were encountered. Include
at a minimum the hash and the url of the job whose failure caused it
to be put on the broken specs list in the first place.
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* env depfile: allow deps only install
- Refactor `spack env depfile` to use a Jinja template, making it a bit
easier to follow as a human being.
- Add a layer of indirection in the generated Makefile through an
`<prefix>/.install-deps/<hash>` target, which allows one to specify
different options when installing dependencies. For example, only
verbose/debug mode on when installing some particular spec:
```
$ spack -e my_env env depfile -o Makefile --make-target-prefix example
$ make example/.install-deps/<hash> -j16
$ make example/.install/<hash> SPACK="spack -d" SPACK_INSTALL_FLAGS=--verbose -j16
```
This could be used to speed up `spack ci rebuild`:
- Parallel install of dependencies from buildcache
- Better readability of logs, e.g. reducing verbosity when installing
dependencies, and splitting logs into deps.log and current_spec.log
* Silence please!
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* spack.compiler.Compiler: introduce prefix property
We currently don't really have something that gives the GCC install
path, which is used by many LLVM-based compilers (llvm, llvm-amdgpu,
nvhpc, ...) to fix the GCC toolchain once and for all.
This `prefix` property is dynamic in the sense that it queries the
compiler itself. This is necessary because it's not easy to deduce the
install path from the `cc` property (might be a symlink, might be a
filename like `gcc` which works by having the compiler load a module
that sets the PATH variable, might be a generic compiler wrapper based
on environment variables like on cray...).
With this property introduced, we can clean up some recipes that have
the logic repeated for GCC.
* intel-oneapi-compilers: set --gcc-sysroot to %gcc prefix
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Caches used by repositories don't reference the global spack.repo.path instance
anymore, but get the repository they refer to during initialization.
Spec.virtual now use the index, and computation done to compute the index
use Repository.is_virtual_safe.
Code to construct mock packages and mock repository has been factored into
a unique MockRepositoryBuilder that is used throughout the codebase.
Add debug print for pushing and popping config scopes.
Changed spack.repo.use_repositories so that it can override or not previous repos
spack.repo.use_repositories updates spack.config.config according to the modifications done
Removed a peculiar behavior from spack.config.Configuration where push would always
bubble-up a scope named command_line if it existed
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Resolves #31782
With this change, if a spec is concrete after parsing (e.g. spec.yaml
or /hash-based), then it is not disambiguated (a process which requires
(a) that the spec be installed and (b) that it be part of the
currently-active environment).
This commit allows you to:
* Diff specs from an environment regardless of whether they have
been installed (more useful for projection/matrix-based envs)
* Diff specs read from .yaml files which may or may not be entirely
different installations of Spack
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
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* Docs: Getting Started Dependencies
Finally document what one needs to install to use Spack on
Linux and Mac :-)
With <3 for minimal container users and my colleagues with
their fancy Macs.
* Debian Update Packages: GCC, Python
- build-essential: includes gcc, g++ (thx Cory)
- Python: add python3-venv, python3-distutils (thx Pradyun)
* Add RHEL8 Dependencies
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When setting `PS1` in Bash, it's required to enclose non-printable characters in square brackets, so that the width of the terminal is handled correctly.
See https://www.gnu.org/software/bash/manual/bash.html#Controlling-the-Prompt
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* filter_file: introduce argument 'start_at'
* autotools: extend patching of the libtool script
* autotools: refactor _patch_usr_bin_file
* autotools: improve readability of the filtering
* autotools: keep the modification time of the configure scripts
* autotools: do not try to patch directories
* autotools: explain libtool patching for posterity
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
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Co-authored-by: alalazo <alalazo@users.noreply.github.com>
Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
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Remove `module-info mode load` condition that prevents auto-unloading when autoloading is enabled. It looks like this condition was added to work around an issue in environment-modules that is no longer necessary.
Add quotes to make is-loaded happy
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Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
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When concurrent misc_cache provider index rebuilds happen, try to
rebuild it only once, so we don't exceed misc_cache lock timeout.
For example, when using `spack env depfile`, with no previous
misc_cache, running `make -f depfile -j8` could run at most 8 concurrent
`spack install` locking on misc_cache to rebuild the provider index. If
one rebuild takes 30s, before this fix, the "worst" lock could wait up
to 30s * 7, easily exceeding misc_cache lock timeout. Now, the "worst"
lock would take 30s * 1 + ~1s * 6.
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Due to a [known
issue](https://community.intel.com/t5/Intel-oneAPI-Data-Parallel-C/dpcpp-and-GNU-Autotools/m-p/1296985)
with dpcpp, autotool-based builds that try to use it will fail because
they try to link against temporary files that no longer exist. This
commit filters those files out of the libtools script so that linking
can work properly.
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(#32340)
Currently, module changes from `setup_dependent_package` are applied only to the module of the package class, but not to any parent classes' modules between the package class module and `spack.package_base`.
In this PR, we create a custom class to accumulate module changes, and apply those changes to each class that requires it. This design allows us to code for a single module, while applying the changes to multiple modules as needed under the hood, without requiring the user to reason about package inheritance.
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* find/list: display package counts last
We have over 6,600 packages now, and `spack list` still displays the number of packages
before it lists them all. This is useless for large sets of results (e.g., with no args)
as the number has scrolled way off the screen before you can see it. The same is true
for `spack find` with large installations.
This PR changes `spack find` and `spack list` so that they display the package count
last.
* add some quick testing
Co-authored-by: Danny McClanahan <1305167+cosmicexplorer@users.noreply.github.com>
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* re2c depends on cmake on Windows
* Winbison properly added to bootstrap package search list
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Allow environment variables and spack-specific path substitution variables (e.g. `$spack`) to be
used in the paths associated with develop specs, while maintaining the ability to keep those
paths relative to the environment rather than the working directory.
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Install: Add use-buildcache option to install
* Allow differentiating between top level packages and dependencies when
determining whether to install from the cache or not.
* Add unit test for --use-buildcache
* Use metavar to display use-buildcache options.
* Update spack-completion
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Make it possible to install the Clingo package on Windows; this
also provides a means to use Clingo with Spack on Windows.
This includes
* A new "winbison" package: Windows has a port of bison and flex where
the two packages are grouped together. Clingo dependencies have been
updated to use winbison on Windows and bison elsewhere (this avoids
complicating the existin bison/flex packages until we can add support
for implied virtuals).
* The CMake build system was incorrectly converting CMAKE_INSTALL_PREFIX
to POSIX format.
* The re2c package has been modified to use CMake on Windows; for now
this is done by overloading the configure/build/install methods to
perform CMake-appropriate operations; the package should be refactored
once support for multiple build systems in one Package is available.
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closes #20340
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This commit fixes #27027.
The root cause of the issue is that the `SPACK_OLD_PROMPT` variable
was evaluated in string interpolation regardless of whether the
guard condition above evaluates to true or false. This commit uses
the `eval` keyword to defer evaluation until the command is executed.
Co-authored-by: Alexander Hornburg <alexande@xilinx.com>
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Spack currently depends on parsing filenames of downloaded files to
determine what type of archive they are and how to decompress them.
This commit adds a preliminary check based on magic numbers to
determine archive type (but falls back on name parsing if the
extension type cannot be determined).
As part of this work, this commit also enables decompression of
.tar.xz-compressed archives on Windows.
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Include exception info related to url retrieval in debug messages
which otherwise would be swallowed. This is intended to be useful
for detecting if CA configuration interferes with downloads from
HTTPS links.
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* Add skip_import to PythonPackage and use it in py-nilearn
* Fix dependencies
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This fixes a bug where two installations that differ only by package hash will not show
up in `spack find`.
The bug arose because `_cmp_node` on `Spec` didn't include the package hash in its
yielded fields. So, any two `Spec` objects that were only different by package hash
would appear to be equal and would overwrite each other when inserted into the same
`dict`. Note that we could still *install* specs with different package hashes, and they
would appear in the database, but we code that needed to put them into data structures
that use `__hash__` would have issues.
This PR makes `Spec.__hash__` and `Spec.__eq__` include the `process_hash()`, and it
makes `Spec._cmp_node` include the package hash. All of these *should* include all
information in a spec so that we don't end up in a situation where we are blind to
particular field differences.
Eventually, we should unify the `_cmp_*` methods with `to_node_dict` so there aren't two
sources of truth, but this needs some thought, since the `_cmp_*` methods exist for
speed. We should benchmark whether it's really worth having two types of hashing now
that we use `json` instead of `yaml` for spec hashing.
- [x] Add `package_hash` to `Spec._cmp_node`
- [x] Add `package_hash` to `spack.solve.asp.spec_clauses` so that the `package_hash`
will show up in `spack diff`.
- [x] Add `package_hash` to the `process_hash` (which doesn't affect abstract specs
but will make concrete specs correct)
- [x] Make `_cmp_iter` report the dag_hash so that no two specs with different
process hashes will be considered equal.
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53a7b49 created a reference error which broke `.libs` (and
`find_libraries`) for many packages. This fixes the reference
error and improves the testing for `find_libraries` by actually
checking the extension types of libraries that are retrieved by
the function.
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* catch json schema errors and reraise as property of SpackError
* no need to catch subclass of given error
* Builtin json library for Python 2 uses more generic type
* Correct instantiation of SpackError (requires a string rather than an exception)
* Use exception chaining (where possible)
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Missing lead in "This may to inconsistent modulfiles if..."
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Add a post-install step which runs (only) on Windows to modify an
install prefix, adding symlinks to all dependency libraries.
Windows does not have the same concept of RPATHs as Linux, but when
resolving symbols will check the local directory for dependency
libraries; by placing a symlink to each dependency library in the
directory with the library that needs it, the package can then
use all Spack-built dependencies.
Note:
* This collects dependency libraries based on Package.rpath, which
includes only direct link dependencies
* There is no examination of libraries to check what dependencies
they require, so all libraries of dependencies are symlinked
into any directory of the package which contains libraries
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WafPackage (#32627)
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* ci: restore coverage computation
* Mark "test_foreground_background" as xfail
* Mark "test_foreground_background_output" as xfail
* Make number of processes explicit, remove verbosity on linux
* Run coverage on just 3 Python jobs for linux
* Run coverage on just 3 Python jobs for linux
* Run coverage on just 2 Python jobs for linux
* Add back verbose, since before we didn't encounter the xdist internal error
* Reduce the workers to 2
* Try to use command line
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* Fix a version cmp bug in asp.py
* Fix submodule bug for git refs
* Add branch in logic for submodules
* Fix git version comparisons
main does not satisfy git.foo=main
git.foo=main does satisfy main
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* define `cmake_prefix_paths` property for packages
add to CMake arguments via CMakePackage
Co-authored-by: Robert Underwood <runderwood@anl.gov>
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* Add two no-op jobs named "all-prechecks" and "all"
These are a suggestion from @tgamblin, they are stable named markers we
can use from gitlab and possibly for required checks to make CI more
resilient to refactors changing the names of specific checks.
* Enable parallel testing using xdist for unit testing in CI
* Normalize tmp paths to deal with macos
* add -u flag compatibility to spack python
As of now, it is accepted and ignored. The usage with xdist, where it
is invoked specifically by `python -u spack python` which is then passed
`-u` by xdist is the entire reason for doing this. It should never be
used without explicitly passing -u to the executing python interpreter.
* use spack python in xdist to support python 2
When running on python2, spack has many import cycles unless started
through main. To allow that, this uses `spack python` as the
interpreter, leveraging the `-u` support so xdist doesn't error out when
it unconditionally requests unbuffered binary IO.
* Use shutil.move to account for tmpdir being in a separate filesystem sometimes
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Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
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