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2020-06-23Added support for --fail-fast install option to terminate on first failureTamara Dahlgren4-5/+67
2020-06-23Allow a single ctrl-c to terminate an install in progressTamara Dahlgren2-3/+31
2020-06-23fix compiler environment handling to reset environment after (#17204)Greg Becker2-19/+84
bugfix: fix compiler environment handling to reset environment after
2020-06-22Pre ci optimization (#16372)Omar Padron3-2/+392
* add initial optimization script * integrate optimization in spack ci * make optimization opt-in * fix import error * flake8 fixes * update command completion * work around vermin errors * fix sphynx errors
2020-06-22swig: fix older builds on newer platforms by updating config files (#16854)Joseph Ciurej1-61/+82
* swig: revise 'autotools' automated 'config.*' update mechanism to support 'config.sub' and adapt 'swig' accordingly
2020-06-18Fetching from urls: Error Message (#16434)Axel Huebl2-4/+10
* Fetching from urls: Error Message Fix the error message when fetching from consecutive `urls` of a package version. Each fail should show the currently failing URL, not the first url. Example multi-problem run that occured in real life: ``` ==> 5821: Installing util-macros curl: (28) Connection timed out after 10000 milliseconds curl: (16) Error in the HTTP2 framing layer curl: (22) The requested URL returned error: 403 Forbidden ==> Fetching https://www.x.org/archive/individual/util/util-macros-1.19.1.tar.bz2 ==> Failed to fetch file from URL: https://www.x.org/archive/individual/util/util-macros-1.19.1.tar.bz2 Curl failed with error 28 ==> Fetching https://mirrors.ircam.fr/pub/x.org/individual/util/util-macros-1.19.1.tar.bz2 ==> Failed to fetch file from URL: https://www.x.org/archive/individual/util/util-macros-1.19.1.tar.bz2 Curl failed with error 16 ==> Fetching http://xorg.mirrors.pair.com/individual/util/util-macros-1.19.1.tar.bz2 ==> Failed to fetch file from URL: https://www.x.org/archive/individual/util/util-macros-1.19.1.tar.bz2 URL https://www.x.org/archive/individual/util/util-macros-1.19.1.tar.bz2 was not found! ==> Fetching from https://www.x.org/archive/individual/util/util-macros-1.19.1.tar.bz2 failed. ==> Error: FetchError: All fetchers failed for spack-stage-util-macros-1.19.1-se2a2e74oyusj2r4esgcb7pr3qhh45ef ``` - `urls[0]`: HTTP2 layer error - `urls[1]`: timeout - `urls[2]`: missing file on mirror * x.org: two more mirrors x.org mirrors are a bit tricky, since many are out-of-sync or off. A good package to test with is `util-macros`, which had a "recent" release.
2020-06-18Docs: fix rst link to spack ci (#17147)Adam J. Stewart1-3/+3
2020-06-17cray module do not work without CRAY_LD_LIBRARY_PATH (#17031)Greg Becker2-5/+9
Co-authored-by: Gregory Becker <becker33.llnl.gov>
2020-06-16Doc: E4S Build Cache Link (#16986)Axel Huebl1-0/+6
Link to the E4S build cache in the according section of the docs.
2020-06-16Yaml spec parsing corner case (#17101)psakievich2-7/+28
* Catch yaml filename corner case in spec parser * improved regex and remove redundant error checking Co-authored-by: Gregory Becker <becker33@llnl.gov>
2020-06-15Skip failing test on MacOS (#17072)Massimiliano Culpo1-0/+2
* Skip failing test on MacOS * Update setup-python action and unpin coverage
2020-06-13clang: add 'version_argument', remove redundant method (#17071)Greg Becker2-20/+3
2020-06-12Buildcache: Fix bug in binary string replacement (#17075)Patrick Gartung1-1/+5
* Fix bug in binary string replacement that results in padding being added multiple times * Update comment * Update comment again
2020-06-11Renamed flags.py to basics.pyMassimiliano Culpo2-1/+2
2020-06-11Reworked tests on compilers to separate version detectionMassimiliano Culpo3-170/+183
Tests on version detection are now separate from other tests done on compiler.
2020-06-10Move to temporary directory before running dev-build test (#17028)Massimiliano Culpo1-3/+4
Without this the test would leave spurious "spack-build-*.txt" files in the current working directory.
2020-06-09lib/spack : expand spack config vars in 'include' section (#16210)Joseph Ciurej2-2/+33
* Changed the 'include' config section to use 'substitute_path_variables' to allow for Spack config variables to be used (e.g. $spack). * Fixed a bug with 'include' section path expansion and added a test case for 'include' paths with embedded config variables.
2020-06-09Testing: create mock executable fixture (#16999)Massimiliano Culpo2-9/+19
2020-06-09SpecList: fix recursion for references (#16897)Greg Becker2-29/+59
* SpecList: fix and refactor variable expansion
2020-06-08Cray: fix Blue Waters support and user-built MPIs on Cray (#16593)Adam J. Stewart2-11/+19
* Cray: fix Blue Waters support * pkg-config env vars needed on Blue Waters * cray platform: fix support for user-build MPI on cray machines * reintroduce cray environment cleaning behind cnl version guard * cray platform: fix support for user-build MPI on cray machines Co-authored-by: Gregory <becker33@llnl.gov>
2020-06-08view remove: directly check whether specs own files before removing from ↵Greg Becker2-5/+44
view (#16955) Bugfix for hardlinks and copies
2020-06-05spack dev-build: Do not mark -u builds in database (#16333)Greg Becker4-21/+61
Builds can be stopped before the final install phase due to user requests. Those builds should not be registered as installed in the database. We had code intended to handle this but: 1. It caught the wrong type of exception 2. We were catching these exceptions to suppress them at a lower level in the stack This PR allows the StopIteration to propagate through a ChildError, and catches it properly. Also added to an existing test to prevent regression.
2020-06-05commands: use a single ThreadPool for `spack versions` (#16749)Massimiliano Culpo4-251/+228
This fixes a fork bomb in `spack versions`. Recursive generation of pools to scrape URLs in `_spider` was creating large numbers of processes. Instead of recursively creating process pools, we now use a single `ThreadPool` with a concurrency limit. More on the issue: having ~10 users running at the same time spack versions on front-end nodes caused kernel lockup due to the high number of sockets opened (sys-admin reports ~210k distributed over 3 nodes). Users were internal, so they had ulimit -n set to ~70k. The forking behavior could be observed by just running: $ spack versions boost and checking the number of processes spawned. Number of processes per se was not the issue, but each one of them opens a socket which can stress `iptables`. In the original issue the kernel watchdog was reporting: Message from syslogd@login03 at May 19 12:01:30 ... kernel:Watchdog CPU:110 Hard LOCKUP Message from syslogd@login03 at May 19 12:01:31 ... kernel:watchdog: BUG: soft lockup - CPU#110 stuck for 23s! [python3:2756] Message from syslogd@login03 at May 19 12:01:31 ... kernel:watchdog: BUG: soft lockup - CPU#94 stuck for 22s! [iptables:5603]
2020-06-03Fix parsing of EvtGen URL (#16883)Adam J. Stewart2-9/+11
* Fix parsing of EvtGen URL * Flake8 fix
2020-06-03Mirrors: add option to exclude packages from "mirror create" (#14154)Peter Scheibel3-23/+98
* add an --exclude-file option to 'spack mirror create' which allows a user to specify a file of specs to exclude when creating a mirror. this is anticipated to be useful especially when using the '--all' option * allow specifying number of versions when mirroring all packages * when mirroring all specs within an environment, include dependencies of root specs * add '--exclude-specs' option to allow user to specify that specs should be excluded on the command line * add test for excluding specs
2020-06-03Feature: add option to create view by copying/relocating files (#16480)Greg Becker4-14/+87
* add subcommand `spack view copy/relocate` * update bash completions * add copy/relocate commands to view tests * allow copied views to be removed
2020-06-03Implicit rpaths for NAG/GCC mixed toolchain (#14782)Sergey Kosukhin6-38/+139
* Implicit rpaths for NAG. * set up environment when checking for implicit rpaths
2020-06-03spack uninstall: improve help message (#16886)Massimiliano Culpo1-7/+15
fixes #12527 Mention that specs can be uninstalled by hash also in the help message. Reference `spack gc` in case people are looking for ways to clean the store from build time dependencies. Use "spec" instead of "package" to avoid ambiguity in the error message.
2020-06-02Unify tests for compiler command in the same file (#16891)Massimiliano Culpo3-113/+105
* Unify tests for compiler command in the same file Tests for the "spack compiler" command were previously scattered among different files. * Tests should use mutable_config, since they modify the compiler list
2020-06-02Fix satisfaction checks for excluding variants from matrices (#16893)Greg Becker6-49/+79
Because of the way abstract variants are implemented, the following spec matrix does not work as intended: ``` matrix: - [foo] - [bar=a, bar=b] exclude: - bar=a ``` because abstract variants always satisfy any variant of the same name, regardless of values. This PR converts abstract variants to whatever their appropriate type is before running satisfaction checks for the excludes clause in a matrix. fixes #16841
2020-06-01openmpi: add opa-psm2 dependency (#16873)Jonathon Anderson1-1/+118
Also document with_or_without and enable_or_disable, (which are used to configure the opa-psm2 dependency).
2020-06-01Recognize system installed gcc-10 as compilers (#16884)Massimiliano Culpo1-1/+1
Now that the version number of GCC reached double digits, an update to the regex is needed to recognize gcc-10 as an executable to be inspected when searching for compilers.
2020-05-29repo: fix construction of UnknownPackageError (#16865)Sergey Kosukhin2-15/+24
Also improve the error messages
2020-05-29Mention that packages can be uninstalled by hash (#16863)Robert Rosca1-1/+2
2020-05-29spack module_cmd: set LD_LIBRARY_PATH for python in subshell. (#16827)Greg Becker3-8/+46
* Ensure python runs with proper ld_library_path within Spack regardless of environment
2020-05-29Update error message when UnavailableCompilerVersionError is triggered (#16838)Jane Herriman1-1/+3
Co-authored-by: Herriman <herriman1@panorama.llnl.gov>
2020-05-29compilers: add opt_flags and debug_flags properties (#16710)Greg Becker11-0/+122
2020-05-28bugfix: use flags when computing implicit rpaths (#16634)Greg Becker10-25/+113
* make verbose_flag a property * tests
2020-05-27spack containerize: allow 0.14.3 tag for next releaseMassimiliano Culpo2-5/+9
2020-05-27spack containerize: allow 0.14.1 and 0.14.2 tagsMassimiliano Culpo2-5/+16
fixes #16727
2020-05-27concretize: fix UnboundLocalError due to import within a function (#16809)Sergey Kosukhin2-1/+7
2020-05-26backwards compatibility for naming scheme (#16812)Greg Becker4-3/+30
* backwards compatibility for naming scheme
2020-05-26spack.relocate: further coverage for ELF related functions (#16585)Massimiliano Culpo4-141/+258
* make_link_relative: added docstring * make_elf_binaries_relative: added docstring, unit tests * raise_if_not_relocatable: added docstring, added unit test for exceptional case * relocate_links: removed unused arguments, added docstring and comments Also fixed a possible bug that was issuing spurious warning when a file was relocated successfully * relocate_text: added docstring and comments, renamed arguments * relocate_text_bin: added docstring and comments, renamed arguments, unit tests
2020-05-25lua: fix compilation on Cray (#16713)Stephen Herbein1-1/+1
Problem: when calling `static_to_shared_library` on the `cray` arch, it produces a non-sensical compiler command with no input files. For example, when installing lua@5.2.4, it produced: 'gcc -lm -ldl -o /big-long-spack-path/liblua.so.5.2.4' Solution: do the same thing on `cray` that is done for `linux`
2020-05-25bugfix: schema errors without line numbers (#16765)Peter Scheibel1-4/+8
* account for schema validation errors where the associated instance doesn't have a line number * fix unrelated flake error (but it must be fixed because this PR touches this file and the flake rules have been updated since the last edit to this file)
2020-05-21autotools: delete args from postdep objects when %fj (#16274)Tomoki, Karatsu1-0/+3
2020-05-20externals: allow package prefs to configure default not buildable (#16735)Greg Becker2-4/+74
Allows `all` to be configured non-buildable in packages.yaml. The following config would only allow zlib to be built by Spack, all other packages would have to be found as externals. ``` packages: all: buildable: False zlib: buildable: True ```
2020-05-20tests: check presence not equality for rpath changes (#16637)Tamara Dahlgren1-3/+9
Fixes #16636
2020-05-19Pipelines: Ensure consistent spack version for entire pipelineScott Wittenburg1-16/+4
Also retry jobs always, as script failure is not confined to only our spack ci rebuild command exit code.
2020-05-18move source dir to last cmake arg (#16709)Greg Becker1-2/+2
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