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2017-11-12binary packages: do post install hooks (#6269)becker331-0/+1
2017-11-12SC17: advanced packaging tutorial (#6148)Massimiliano Culpo2-0/+564
* First draft of the advanced packaging tutorial * advanced packaging tutorial: improved phrasing Thanks Denis and Hartzell! * Fixed typos + reworded a couple of sentences
2017-11-12SC17: reworked module file tutorial section (#5657)Massimiliano Culpo3-363/+1911
* Reworked module file tutorial section First draft for the SC17 update. This includes: - adding an introduction on module files + Spack's module generation blueprints - adding a set-up section and provide a docker image for easy set-up - updating all the relevant snippets - extending a bit some of the concepts that were already touched * Added reference to #5582 + committed Dockerfiles Also fixed a couple of typos spotted by Denis. * module file tutorial: added section on template customization * module file tutorial: fixed minor typos + rephrased a sentence * module file tutorial: made explicit that Docker image comes with software * module file tutorial: improved phrasing and layout. Thanks Hartzell! * module file tutorial: added vim and nano to editors * module file tutorial: fixed typo * Fixed typos Thanks Adam! * module file tutorial: updated Dockerfile + minor changes in introduction
2017-11-11Don't include build-only dependencies in build cache hash (#6262)becker331-3/+5
2017-11-10Group flags and values separated by space (#6169)scheibelp5-2/+52
Fixes #6154 For compiler options which set values using the syntax "-flag value" (with a space between the flag and the flag's value) the flag and value were treated as separate and reordered. This updates Spack's logic to treat the flag and value as a single unit, even if there is a space between them. It assumes that all flags are prefixed with "-" and that all flag values are not.
2017-11-09deal with case where symbolic links are copied (#6178)Patrick Gartung1-0/+9
* deal with case where symbolic links are copied * Suggested changes
2017-11-09spack buildcache: symlink and relative RPATH fixes (#6140)Patrick Gartung4-106/+153
* Skip rewriting files that are links (this also avoids issues with parsing the output of the 'file' command for symlinks) * Fail rather than warn for several gpg signing issues (e.g. if there is no key available to sign with) * Installation with 'buildcache install' only retrieves link and run dependencies (this matches 'buildcache create' which only creates tarballs of link/run dependencies) * Don't rewrite RPATHs for a binary if the binary cached package was created with relative RPATHs * Refactor relocate_binary to operate on multiple binaries (given as a collection of paths). This was likewise done for relocate_text and make_binary_relative
2017-11-06add artisanal handcrafted SVG Spack logo. (#6165)Todd Gamblin1-1/+1
- This isn't one of those autogenerated SVGs from a drawing program! - This is a completely re-traced, minimalist SVG file with clearly delineated pieces so that your favorite renderer can draw a Spack logo at whatever resolution you want. - Included versions with text, as well.
2017-11-06Fix spack view hardlink (#6130)Johann Klähn2-1/+14
Fix a typo in "spack view hardlink" introduced in #5415 ("os.hardlink" does not exist).
2017-11-06Introduce static_to_shared_library function (#6092)Michael Kuhn2-0/+197
The static_to_shared_library function takes an existing static library and produces a shared library based on it.
2017-11-06Docs: MPI as Root (#6156)Axel Huebl1-0/+3
New versions of OpenMPI need `--allow-run-as-root` for running as root: http://www.open-mpi.de/doc/v2.0/man1/mpirun.1.php#toc22
2017-11-06Add back help placeholder for "spack load" (#6127)scheibelp5-8/+30
Fixes #6126 #3183 removed the print_help function from the "modules" module. This adds it back so that if a user invokes 'spack load foo' without having sourced an environment setup script, they will be prompted to do so. This also improves the placeholder message to tell the user to invoke 'spack' as shell function rather than as an executable.
2017-11-04Replace github.com/llnl/spack with github.com/spack/spack (#6142)Todd Gamblin277-298/+298
We moved to a new GitHub org! Now make the code and docs reflect that.
2017-11-03Fix restaging of resources (#5681)Johann Klähn1-12/+22
Part of the resource staging process is to place downloaded/expanded files in the root stage. This was not happening when a resource stage was restaged.
2017-11-03spack fetch: don't fetch externals. (#6124)Todd Gamblin1-1/+8
Fixes #6123 spack fetch shouldn't attempt to fetch external deps when invoked with --dependencies.
2017-11-02Configure user for mock Git repository (#6128)Michael Kuhn1-0/+2
If user.useConfigOnly is set globally and no name or e-mail is configured, the git_fetch tests fail.
2017-11-02test_activations: also test perl activationsBen Boeckel1-0/+103
2017-11-02test_activations: test Python's extension logicPeter Scheibel1-0/+168
2017-11-02spec: support a test prefixPeter Scheibel1-0/+5
This is used in tests to test real packages without actually building and installing them.
2017-11-02view: test conflicting packages in viewsBen Boeckel1-0/+25
2017-11-02view: test that extension paths existBen Boeckel1-0/+23
2017-11-02filesystem_view: reject packages with activationsBen Boeckel3-11/+26
If there are extensions that are globally activated, reject adding them to a view. Those extensions should not be implicitly activated.
2017-11-02view: test viewing external packagesBen Boeckel1-0/+9
2017-11-02view: add a test for extension activationBen Boeckel1-0/+82
2017-11-02extensions: support only showing a subset of informationBen Boeckel1-32/+60
2017-11-02extensions: support acting on a viewBen Boeckel3-12/+40
This allows extensions to be (de)activated and queried within a view rather than only acting on the global installation.
2017-11-02view: use the FilesystemView abstraction for creating viewsOliver Breitwieser1-198/+127
2017-11-02view: fix some docstrings for argumentsOliver Breitwieser1-2/+2
2017-11-02filesystem_view: do not link external packagesBen Boeckel1-0/+10
2017-11-02filesystem_view: add a class to handle a view via a Yaml descriptionOliver Breitwieser1-0/+524
2017-11-02package: support removing dependencies when deactivatingOliver Breitwieser1-6/+14
2017-11-02conftest: mock out spack.store.extensions as wellBen Boeckel1-0/+4
2017-11-02views: support querying view layouts as wellOliver Breitwieser5-26/+56
This abstracts out the layout in use between the global installations and a specific view.
2017-11-02link_tree: support choosing the link functionOliver Breitwieser1-2/+2
This can be used to make hardlinks rather than symlinks.
2017-11-02link_tree: support ignoring conflictsOliver Breitwieser1-3/+16
2017-11-02directory_layout: add a YamlExtensionsLayout classOliver Breitwieser1-0/+25
This uses a view to query extensions.
2017-11-02link_tree: only remove matching files when unmergingOliver Breitwieser1-1/+6
2017-11-02directory_layout: factor out an ExtensionsLayout classOliver Breitwieser1-92/+118
2017-11-02extensions: add an installed_extensions_for methodBen Boeckel2-1/+11
2017-11-02database: rename `installed_extensions_for`Oliver Breitwieser3-3/+3
Views support activating packages, so rename the method because it will soon query what is activated versus what is installed.
2017-11-02package: support verbosity when activatingOliver Breitwieser1-8/+14
2017-11-02package: rename `activated` to `is_activated`Oliver Breitwieser4-10/+10
This allows the activation code to be later given parameters.
2017-11-02cmd/test: fix a typo in a commentBen Boeckel1-1/+1
2017-11-02spec_yaml: fix a typoBen Boeckel1-1/+1
2017-11-02view: fix a typoOliver Breitwieser1-1/+1
2017-11-02determine full compiler version for gcc-7Ben Boeckel1-1/+4
Fixes #5778. Spack uses 'gcc -dumpversion' to determine the full version of gcc. 'gcc -dumpversion' no longer gives the full version on gcc 7.2.0. 'gcc -dumpfullversion' is required instead. This PR detects when 'gcc -dumpversion' gives a truncated version of '7' and in that case retrieves the full version with 'gcc -dumpfullversion'
2017-11-02Only use XCode clang wrappers for packages that set use_xcode=True (#6077)Todd Gamblin3-23/+11
2017-11-01update filename used for cc wrapper invocation debug log (#5837)scheibelp3-3/+8
The name of the debug log written by the cc compiler wrapper was given by Spec.short_spec, which includes the architecture. Somewhere along the line Spec.format started adding spaces around the architecture property so the filename started including spaces; the cc wrapper script appears to ignore this, so files like spack-cc-bzip2-....in.log (which record the wrapped compiler invocations) were not being generated. This uses a different format string from the spec to generate the wrapper log file names (which does not include spaces).
2017-11-01Fix user specs which include already-installed packages (#5939)scheibelp2-1/+7
* when a user-provided spec refers to an already-installed package, packages with patches applied were causing validation errors based on the recorded variants in the package's class * avoid checks on all reserved variants (not just 'patches')
2017-10-30Auto install available pre-built packages from binary cache (#5242)scheibelp5-30/+62
* basic functionality to install spec from a binary cache when it's available; this spiders each cache for each package and could likely be more efficient by caching the results of the first check * add spec to db after installing from binary cache * cache (in memory) spec listings retrieved from binary caches * print a warning vs. failing when no mirrors are configured to retrieve pre-built Spack packages * make automatic retrieval of pre-built spack packages from mirrors optional * no code was using the links stored in the dictionary returned by get_specs, so this simplifies the logic to return only a set of specs * print package prefix after installing from binary cache * provide more information to user on install progress
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